GBrowse Details

Vigan.07G129900.01

Basic Information:
Name: Vigan.07G129900.01
Multiple alignment
Variant Information
Position: Chr07:14041000..14041810 (- strand)
Length: 811
Functional Information:
Description: Similar to PDF1. [Q8W434, Vigna radiata]
GO: Biological Process: defense response (GO:0006952)
InterPro: Knottin, scorpion toxin-like (IPR003614)
Gamma thionin (IPR008176)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,24216.80,7.60,8.85,2.55,171.83,23.03,4.76
Automatic updates:
Name: LN913082 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata mRNA for defensin protein (PDF1 gene), cultivar Dautam.
PubMed ID: -
Status: Known Variant
Name: LN913083 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata mRNA for defensin protein (PDF1 gene), cultivar DX22.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:14041000..14041226 (- strand)
Length: 227
Type: three_prime_UTR
Position: Chr07:14041227..14041396 (- strand)
Length: 170
Type: CDS
Position: Chr07:14041499..14041556 (- strand)
Length: 58
Type: CDS
Position: Chr07:14041557..14041810 (- strand)
Length: 254
Type: five_prime_UTR

>Vigan.07G129900.01 class=Sequence position=Chr07:14041000..14041810 (- strand)
TAGCTAGAAG CCTAAATTTA ATTGTCCTGA TAAGTTCCTT TGCAACACAT GGCACATGAA AATACAAATC CACCGCAACC
TTCTTACAGA TTTTCTTCCA GTTTCTACTT ACGTTTCTCA TCAGCAACTT CATCGGTGTA TACTTTTCAA CTCTTCAAGT
GCTATATATA TGTATATGTG TGTGTCAAAT AAACACAAAC AGCTACCTTC ATATTTCATC ACAGACATAT AAGTGAATAT
CCACGAACTA AGCCATGGAG AAGAAATCAC TGGCTGGATT ATGCTTCCTC TTCCTTGTTC TCTTTGTTGC TCGTAAGTCA
CTACTCTTAT GTTCATTCTT CCGCATGATT TTATATCTTT AGTGGTGAAT ACTTTATAAT CGAATGTCTC TAACGTATGT
ATTTGAACAA GCAGAAGAAG TTGTGGTGCA GACTGAGGCA AGGACTTGCG AGAATCTGGC GAATAGTTAC AGGGGTCCAT
GCATCACCAC TGGCAGCTGC GATGATCACT GCAAGAACAA AGAACACTTG AATAGTGGAA GGTGCAGGGA TGATTTCCGG
TGTTGGTGCA CCAAAAACTG TTAACTGGAT TCTCTCCAAC CTGAACAAAA GAGCATGCAG GGCATTTTAT AAATAAAAAA
CTATATATAT ACAATAAGCC TTCTACTGCA TCTATATATC AACTTTGTAC TATAGTACTA CTTTCATGTC AGAACTATGT
CTGTAGTCTC TGTCACTGCA TAACAGCTAT AAGTTATGCA CTTATGTTAT GAAATGAATA ATGAATAAAC TTCTTATGTT
GCAAAACGTC A

>Vigan.07G129900.01
TAGCTAGAAG CCTAAATTTA ATTGTCCTGA TAAGTTCCTT TGCAACACAT GGCACATGAA AATACAAATC CACCGCAACC
TTCTTACAGA TTTTCTTCCA GTTTCTACTT ACGTTTCTCA TCAGCAACTT CATCGGTGTA TACTTTTCAA CTCTTCAAGT
GCTATATATA TGTATATGTG TGTGTCAAAT AAACACAAAC AGCTACCTTC ATATTTCATC ACAGACATAT AAGTGAATAT
CCACGAACTA AGCCATGGAG AAGAAATCAC TGGCTGGATT ATGCTTCCTC TTCCTTGTTC TCTTTGTTGC TCAAGAAGTT
GTGGTGCAGA CTGAGGCAAG GACTTGCGAG AATCTGGCGA ATAGTTACAG GGGTCCATGC ATCACCACTG GCAGCTGCGA
TGATCACTGC AAGAACAAAG AACACTTGAA TAGTGGAAGG TGCAGGGATG ATTTCCGGTG TTGGTGCACC AAAAACTGTT
AACTGGATTC TCTCCAACCT GAACAAAAGA GCATGCAGGG CATTTTATAA ATAAAAAACT ATATATATAC AATAAGCCTT
CTACTGCATC TATATATCAA CTTTGTACTA TAGTACTACT TTCATGTCAG AACTATGTCT GTAGTCTCTG TCACTGCATA
ACAGCTATAA GTTATGCACT TATGTTATGA AATGAATAAT GAATAAACTT CTTATGTTGC AAAACGTCA

>Vigan.07G129900.01
ATGGAGAAGA AATCACTGGC TGGATTATGC TTCCTCTTCC TTGTTCTCTT TGTTGCTCAA GAAGTTGTGG TGCAGACTGA
GGCAAGGACT TGCGAGAATC TGGCGAATAG TTACAGGGGT CCATGCATCA CCACTGGCAG CTGCGATGAT CACTGCAAGA
ACAAAGAACA CTTGAATAGT GGAAGGTGCA GGGATGATTT CCGGTGTTGG TGCACCAAAA ACTGTTAA

>Vigan.07G129900.01
MEKKSLAGLC FLFLVLFVAQ EVVVQTEART CENLANSYRG PCITTGSCDD HCKNKEHLNS GRCRDDFRCW CTKNC*