GBrowse Details

Vigan.07G127600.01

Basic Information:
Name: Vigan.07G127600.01
Multiple alignment
Variant Information
Position: Chr07:12822482..12824981 (+ strand)
Length: 2500
Functional Information:
Description: Similar to Fiber protein Fb34. [T2DPH5, Phaseolus vulgaris]
InterPro: Protein of unknown function DUF1218 (IPR009606)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.54,6.63,46.91,20.66,29.41,67.41,74.01,124.60
Arabidopsis thaliana homolog: AT4G27435.1
Automatic updates:
Name: NM_001251276 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499677 (LOC100499677), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251564 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305647 (LOC100305647), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:12822482..12822688 (+ strand)
Length: 207
Type: five_prime_UTR
Position: Chr07:12822689..12822778 (+ strand)
Length: 90
Type: CDS
Position: Chr07:12823999..12824204 (+ strand)
Length: 206
Type: CDS
Position: Chr07:12824424..12824688 (+ strand)
Length: 265
Type: CDS
Position: Chr07:12824689..12824981 (+ strand)
Length: 293
Type: three_prime_UTR

>Vigan.07G127600.01 class=Sequence position=Chr07:12822482..12824981 (+ strand)
ATTTTCCACA CTTTTTTTTA TTATTTTCAA CTATCTTTGC TTTTTAATAT TTTTTTGGTC ATTTTTGCTG CGTAATTTGC
ATTTAGAAGG AATCCCAACT TGCTTTTATA GTTGCCAAGA TCAGTGAAGA GGCAACACAA CAGAGAGAGA GAGAAACAGC
AAATTCAACA TTGTTCTGTT CTTCAGCAAC ATTCTCTACT CACATCCATG GCTTCCAAAC TCTTACTCAT TACTGTCTTC
GTTTTTGACT TGATTGCTTT TGGATTGGCC GTGGCTGCTG AGCAGAGAAG AAGCACAGTG AGTTTGTACA TTTCAATTCA
CTCTTGTTTT CTCTAAATCC CAAGTTAAAA TATGGGCGTG TGTTTAGAGA TGTTTTTTAT TTGTGGGTTT GAGAAGAATA
GAGTGATCAA TTAATGAATG AACTTGAAAG ATAATTATTT CTTTGTCTTT CTTGATTGTG TATGAAGCGA GAAAATGTGG
GCAAATCATG AATCTTGTAT ATTTCTTTGT GCGAACTAAA GTTTGGAATT TGATATTGGG TTTATCACAT GCTGGCATAA
AGGCTTCAAA GAAGCTTACT CCTATTTTTA AGTTCCTAGT TTTTCTTTTC TGATTTGGGC TTACCCAGAT CTGTATACTG
TTAAAAGTGT GATCTTTTTT TAAGATAGTT GTAAATGTGA TATGAACATA TTTTGCAAAA AACTGTCTGT AGTTCTTGCT
GTTGGCTTCC ATGACATGCC AAATCTTGAA CTGTTTCTCC CCTTGGGTGA AGTTCTTCAT GGATGTGATA GGTTTTGTGA
TTTCTCTGGT TGTGTTTGTG AATGGAGATC CAGATCTGTA TATACATTAT ACTGTCGTGT TTGTAAGCAA GAGAAAATGT
TCTGTGATGT GAAGCCCCAG ATCTCTCCTT TTTCTTTCTT ATAACCTTAA CATGTATCAA ATTTAGGCAA AGAGTTCGTT
GGAATTGTGT CATTGAAATT CCACTAGGAA AAATTGTGAA TCTGTTTTTC GTTGAAGGTG CCATATGTTC TGCAATAGCT
TTGAAATATA CTTGCATATT CATATGATCT GTTATGAATT AATGACTACT TAGCTAACAC AGGTGTTTCC CTAACACAGA
ACTAAGCATT CAAGGGTTTT CTTTTTTCAA CCCTGGTTGG TGTAATTCGT GGTTCAAGCG AAGAATATTT AGTTATACAA
AACCAAAGAC TCGTTTACTT TTTCAAAATT TTCACCAACT GATTGTGAAA ATGTAATGAC AATCCCTTTA GTGGTGAGGA
GATACATGGT CATAATTCTT CATGTGCAAA GAAATAAAGT TATCGTTTTG GTACATTTAT GGATTTGAAG CTTGAACGTA
TGATCTCTTG TTCATTATCC GAACCAGTCA CTACTACTAG CCTAATTCAC TCCTAATGAC TTATAAGTGA TGTTTTTATG
CTTACGATGC AATCTTTTGA GCTTTTACCT TTCTATCTCC TGCTTAACAA AACATTTATC TTTGTTTTAA TTGGCAGGCT
AAGATTGTGC AGGACAACGA TGTGAACTAT AACTACTGTG TCTATAAGTC TGATATAGCT ACTGGCTATG GGGTCGGAGC
ATTTTTGTTC CTCTTGGTTA GTCAAGTCCT GATAATGGTG GCAAGCCGAT GCTTCTGTTG TGGGAAGCCT CTAAGCCCAG
GAGGCTCAAG GGCTTGTGCA ATTGTCCTTT TCATAATCTG CTGGTATATC ATCTTTCCTC AAAGAACTAA CAATGGTGAA
TTATAGATAT CAAATAATAA CAAAATGTAG CGTGTTAAGA CGTTTTTATA TCCTGCAAAT TTGATTAACT TCATTTAATT
TCCATAGATG ATATACACCA TATAAACTGA ATTCATATTA CCTTCTATTT TGGTATTTAG CTCTTCAATT GATTACATTT
GTTTGGCAAC TGTCTGCTTC AGGGTGTTTT TCATAATAGC TGAGATCTGC TTGTTAGCTG GATCAGTGGA AAATGCGTAC
CACACCAAGT ATAGGCACAA CATTTTTGCG AACAAAGAGC TATCTTGCGA AACAGTTAGG AAGGGAGTGT TTGCTGCTGG
TGCTGCTTTT GTTTTCTTCA CTGCCATTGT TTCTCAATTC TACTATGTCA ACTATTCAAG TGCCAGGGAA AGCTTCCAAC
CTTATGGTGG CGGTGAGACT GGTGTAGGTA TGGGAACCTA CAAATGAGCT TGTTAGTTAA GAATTTTAGA GCCTAAATTT
AGGTGTGACT ATACCTGGAG TCTGGATTCT GCAGCACATT TCTTGGATTT TGTTGCATTT GTTGTATTTA CAGTTTAGCT
ACTTTACTAG AATGAATGTA TAAGTTGTAT CTTAGTAATT TTTTGTTGTC ACATATTGTG GTATGTTATG GGTGATTCAT
TCATTGCCTC TTTACACTTT TGGAGTTTTT GTCATGTATA CATATCAACA AGAGAAATAA TTTCTTGATT TATATTGTTT
CTGCATACTA ATAAATTGTA 

>Vigan.07G127600.01
ATTTTCCACA CTTTTTTTTA TTATTTTCAA CTATCTTTGC TTTTTAATAT TTTTTTGGTC ATTTTTGCTG CGTAATTTGC
ATTTAGAAGG AATCCCAACT TGCTTTTATA GTTGCCAAGA TCAGTGAAGA GGCAACACAA CAGAGAGAGA GAGAAACAGC
AAATTCAACA TTGTTCTGTT CTTCAGCAAC ATTCTCTACT CACATCCATG GCTTCCAAAC TCTTACTCAT TACTGTCTTC
GTTTTTGACT TGATTGCTTT TGGATTGGCC GTGGCTGCTG AGCAGAGAAG AAGCACAGCT AAGATTGTGC AGGACAACGA
TGTGAACTAT AACTACTGTG TCTATAAGTC TGATATAGCT ACTGGCTATG GGGTCGGAGC ATTTTTGTTC CTCTTGGTTA
GTCAAGTCCT GATAATGGTG GCAAGCCGAT GCTTCTGTTG TGGGAAGCCT CTAAGCCCAG GAGGCTCAAG GGCTTGTGCA
ATTGTCCTTT TCATAATCTG CTGGGTGTTT TTCATAATAG CTGAGATCTG CTTGTTAGCT GGATCAGTGG AAAATGCGTA
CCACACCAAG TATAGGCACA ACATTTTTGC GAACAAAGAG CTATCTTGCG AAACAGTTAG GAAGGGAGTG TTTGCTGCTG
GTGCTGCTTT TGTTTTCTTC ACTGCCATTG TTTCTCAATT CTACTATGTC AACTATTCAA GTGCCAGGGA AAGCTTCCAA
CCTTATGGTG GCGGTGAGAC TGGTGTAGGT ATGGGAACCT ACAAATGAGC TTGTTAGTTA AGAATTTTAG AGCCTAAATT
TAGGTGTGAC TATACCTGGA GTCTGGATTC TGCAGCACAT TTCTTGGATT TTGTTGCATT TGTTGTATTT ACAGTTTAGC
TACTTTACTA GAATGAATGT ATAAGTTGTA TCTTAGTAAT TTTTTGTTGT CACATATTGT GGTATGTTAT GGGTGATTCA
TTCATTGCCT CTTTACACTT TTGGAGTTTT TGTCATGTAT ACATATCAAC AAGAGAAATA ATTTCTTGAT TTATATTGTT
TCTGCATACT AATAAATTGT A

>Vigan.07G127600.01
ATGGCTTCCA AACTCTTACT CATTACTGTC TTCGTTTTTG ACTTGATTGC TTTTGGATTG GCCGTGGCTG CTGAGCAGAG
AAGAAGCACA GCTAAGATTG TGCAGGACAA CGATGTGAAC TATAACTACT GTGTCTATAA GTCTGATATA GCTACTGGCT
ATGGGGTCGG AGCATTTTTG TTCCTCTTGG TTAGTCAAGT CCTGATAATG GTGGCAAGCC GATGCTTCTG TTGTGGGAAG
CCTCTAAGCC CAGGAGGCTC AAGGGCTTGT GCAATTGTCC TTTTCATAAT CTGCTGGGTG TTTTTCATAA TAGCTGAGAT
CTGCTTGTTA GCTGGATCAG TGGAAAATGC GTACCACACC AAGTATAGGC ACAACATTTT TGCGAACAAA GAGCTATCTT
GCGAAACAGT TAGGAAGGGA GTGTTTGCTG CTGGTGCTGC TTTTGTTTTC TTCACTGCCA TTGTTTCTCA ATTCTACTAT
GTCAACTATT CAAGTGCCAG GGAAAGCTTC CAACCTTATG GTGGCGGTGA GACTGGTGTA GGTATGGGAA CCTACAAATG
A

>Vigan.07G127600.01
MASKLLLITV FVFDLIAFGL AVAAEQRRST AKIVQDNDVN YNYCVYKSDI ATGYGVGAFL FLLVSQVLIM VASRCFCCGK
PLSPGGSRAC AIVLFIICWV FFIIAEICLL AGSVENAYHT KYRHNIFANK ELSCETVRKG VFAAGAAFVF FTAIVSQFYY
VNYSSARESF QPYGGGETGV GMGTYK*