GBrowse Details

Vigan.07G122500.01

Basic Information:
Name: Vigan.07G122500.01
Multiple alignment
Variant Information
Position: Chr07:11929083..11930940 (- strand)
Length: 1858
Functional Information:
Description: Similar to Uncharacterized protein. [K7M2E6, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,2.13,0.16,1.09,0.00,0.67,0.02
Automatic updates:
Name: KT031201 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_73 MYB/HD-like transcription factor (Glyma12g34650.2) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001361044 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB/HD-like transcription factor (MYB15), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:11929083..11929161 (- strand)
Length: 79
Type: three_prime_UTR
Position: Chr07:11929162..11930026 (- strand)
Length: 865
Type: CDS
Position: Chr07:11930361..11930490 (- strand)
Length: 130
Type: CDS
Position: Chr07:11930723..11930852 (- strand)
Length: 130
Type: CDS
Position: Chr07:11930853..11930940 (- strand)
Length: 88
Type: five_prime_UTR

>Vigan.07G122500.01 class=Sequence position=Chr07:11929083..11930940 (- strand)
TCTCTTTCTG ATTTTCAGAT ACAAACTATA ACCCTTCATC ATCACAGACG TGTTGGGAAT TTTCTGTCAT TGTTCCATCT
TCTTCATCAT GACCAAGTCC TCTACTGAAA AAAATGGACT CAAGAAGGGT CCATGGACCC CAGAGGAAGA TCAGAAACTC
ATCGACTACA TTCAAAAACA TGGACATGGA AAATGGCGAA CCCTTCCCAA AAATGCAGGT AACACTAATT ACTTTATTTG
TTAAGACCAT CTCTAATTAA GTTTTACTTT ATGCAAGTCA TGACCTTAAA AAATTTAAGG ATTTTGCCAA CTTTCTACTT
CACACAATTT GTCGAACAAA CTTCAAATGA ATCTTATGTT ATATATCTGT CAATAAATAT TGCTGGAAAC CGTGTCACAT
AAAAAGATGA ACCTGACAAA GTTTTGCATT TGTTTTTTCA TGATACGTAG GACTACGAAG ATGTGGAAAG AGCTGTCGGC
TTCGCTGGGC GAACTACTTG AGACCTGATA TAAAGAGAGG GAGATTCTCA TTCGAAGAAG AAGAAGCCAT CATCCAGTTA
CACAGTGTTT TGGGAAACAA GTAAGTGAGG AATTAAAGTC CTGCATTATT TTTCGTCCTA ACCTTTTTTT TTTTCCTTGT
TGGTACATGC ATATTTCCTC AGTCTACTTT AACAATGTAT TTAAAAAAAG AACCCTTTTT GAATTTACTT GTATGATATT
CAGAATCGCC AACTAATGCA TGGACTTTAA ACCCTGTGAA CCATTAAAAT TCATTTTGTA GTTAGAGAAT GGTAGCTAGA
CAACTATGCA AAGTCAATGA TGCATACAAT AACAAACAAT ATTTTCTTCT TTTGTCTCTT TGTAACACAG CAAATTAATT
ATTGATTTCC AATGGAAATT TTTGTCCTGC ACAGGTGGTC TACAATTGCT GCTAACTTGC CAGGAAGAAC AGATAATGAG
ATCAAGAATT ATTGGAACAC CCACATCAAG AAAAAGCTTT TCAAGATGGG GATTGATCCT GTGACTCACG CACCACGCCT
TGATGTTCTA CAACTTGCCT CCATTCTCAA CACATCTTTG TTCAATTCAT CACCACAATT CAACTACCCT TTTCTTTCAG
GAAGATCAGT GATAAACTCC AGCCAGCTGC TAAGTTTGCT TTCCACTCTT CTCTCGTGTC AAAGCAGAAA CAACCCTGAT
AATGTATTGA ATCATAATAA TTTCCACCAA AACGATAACC AACTCTTGCA AAATCAGCCC CAATGTACCC AAATGCAACT
TGCTGATACC TTACAAACCT TCCAACCAAA CCAACCCCAG GTTTCACTTC AAGAAAACCT TATTGCTAAG TCTAATAATC
CATTGAACGT GGATCACCAA CTGATGAAAA GTAAATTAGA GAATCAAATC TCTCCAGTTG CTACCTCTTT CACCCACCAA
AACACCCTTC CAAATCTGTG GCATTATGAC AACATATCAG ACTTACAAAT TGCCCAATCA TCATCAGCTA TGCAGTGTTT
CTCTTCACCC AAGTTCAACT CTATATTCAA CAGTCTCTTG GAAAATCAGA ATCTGTGTAA CAACGAGGGA ATGCCAAATT
TCAATTTAAG TTCACTGTTA TCGTCAACAA CTTCATCTTC CAGCCCAAGT ACTTTGAATT CATCATCTTC CACCACATTT
GTCAACGGAA CCACAGAAGA TGAAAGGGAC ACTTACGGCA GCAGCAACAT GCTAATGTAC AACATTTCCA ATGGCTTGAA
TGACTCTGGA CTTTTGTGAT TAACTCCTTT AATGCAAGTT CAGAATTTGT TTTAGTACCT CAAAATTTGT TTATTTCGGT
TCAGACTGTT TTGAGACT

>Vigan.07G122500.01
TCTCTTTCTG ATTTTCAGAT ACAAACTATA ACCCTTCATC ATCACAGACG TGTTGGGAAT TTTCTGTCAT TGTTCCATCT
TCTTCATCAT GACCAAGTCC TCTACTGAAA AAAATGGACT CAAGAAGGGT CCATGGACCC CAGAGGAAGA TCAGAAACTC
ATCGACTACA TTCAAAAACA TGGACATGGA AAATGGCGAA CCCTTCCCAA AAATGCAGGA CTACGAAGAT GTGGAAAGAG
CTGTCGGCTT CGCTGGGCGA ACTACTTGAG ACCTGATATA AAGAGAGGGA GATTCTCATT CGAAGAAGAA GAAGCCATCA
TCCAGTTACA CAGTGTTTTG GGAAACAAGT GGTCTACAAT TGCTGCTAAC TTGCCAGGAA GAACAGATAA TGAGATCAAG
AATTATTGGA ACACCCACAT CAAGAAAAAG CTTTTCAAGA TGGGGATTGA TCCTGTGACT CACGCACCAC GCCTTGATGT
TCTACAACTT GCCTCCATTC TCAACACATC TTTGTTCAAT TCATCACCAC AATTCAACTA CCCTTTTCTT TCAGGAAGAT
CAGTGATAAA CTCCAGCCAG CTGCTAAGTT TGCTTTCCAC TCTTCTCTCG TGTCAAAGCA GAAACAACCC TGATAATGTA
TTGAATCATA ATAATTTCCA CCAAAACGAT AACCAACTCT TGCAAAATCA GCCCCAATGT ACCCAAATGC AACTTGCTGA
TACCTTACAA ACCTTCCAAC CAAACCAACC CCAGGTTTCA CTTCAAGAAA ACCTTATTGC TAAGTCTAAT AATCCATTGA
ACGTGGATCA CCAACTGATG AAAAGTAAAT TAGAGAATCA AATCTCTCCA GTTGCTACCT CTTTCACCCA CCAAAACACC
CTTCCAAATC TGTGGCATTA TGACAACATA TCAGACTTAC AAATTGCCCA ATCATCATCA GCTATGCAGT GTTTCTCTTC
ACCCAAGTTC AACTCTATAT TCAACAGTCT CTTGGAAAAT CAGAATCTGT GTAACAACGA GGGAATGCCA AATTTCAATT
TAAGTTCACT GTTATCGTCA ACAACTTCAT CTTCCAGCCC AAGTACTTTG AATTCATCAT CTTCCACCAC ATTTGTCAAC
GGAACCACAG AAGATGAAAG GGACACTTAC GGCAGCAGCA ACATGCTAAT GTACAACATT TCCAATGGCT TGAATGACTC
TGGACTTTTG TGATTAACTC CTTTAATGCA AGTTCAGAAT TTGTTTTAGT ACCTCAAAAT TTGTTTATTT CGGTTCAGAC
TGTTTTGAGA CT

>Vigan.07G122500.01
ATGACCAAGT CCTCTACTGA AAAAAATGGA CTCAAGAAGG GTCCATGGAC CCCAGAGGAA GATCAGAAAC TCATCGACTA
CATTCAAAAA CATGGACATG GAAAATGGCG AACCCTTCCC AAAAATGCAG GACTACGAAG ATGTGGAAAG AGCTGTCGGC
TTCGCTGGGC GAACTACTTG AGACCTGATA TAAAGAGAGG GAGATTCTCA TTCGAAGAAG AAGAAGCCAT CATCCAGTTA
CACAGTGTTT TGGGAAACAA GTGGTCTACA ATTGCTGCTA ACTTGCCAGG AAGAACAGAT AATGAGATCA AGAATTATTG
GAACACCCAC ATCAAGAAAA AGCTTTTCAA GATGGGGATT GATCCTGTGA CTCACGCACC ACGCCTTGAT GTTCTACAAC
TTGCCTCCAT TCTCAACACA TCTTTGTTCA ATTCATCACC ACAATTCAAC TACCCTTTTC TTTCAGGAAG ATCAGTGATA
AACTCCAGCC AGCTGCTAAG TTTGCTTTCC ACTCTTCTCT CGTGTCAAAG CAGAAACAAC CCTGATAATG TATTGAATCA
TAATAATTTC CACCAAAACG ATAACCAACT CTTGCAAAAT CAGCCCCAAT GTACCCAAAT GCAACTTGCT GATACCTTAC
AAACCTTCCA ACCAAACCAA CCCCAGGTTT CACTTCAAGA AAACCTTATT GCTAAGTCTA ATAATCCATT GAACGTGGAT
CACCAACTGA TGAAAAGTAA ATTAGAGAAT CAAATCTCTC CAGTTGCTAC CTCTTTCACC CACCAAAACA CCCTTCCAAA
TCTGTGGCAT TATGACAACA TATCAGACTT ACAAATTGCC CAATCATCAT CAGCTATGCA GTGTTTCTCT TCACCCAAGT
TCAACTCTAT ATTCAACAGT CTCTTGGAAA ATCAGAATCT GTGTAACAAC GAGGGAATGC CAAATTTCAA TTTAAGTTCA
CTGTTATCGT CAACAACTTC ATCTTCCAGC CCAAGTACTT TGAATTCATC ATCTTCCACC ACATTTGTCA ACGGAACCAC
AGAAGATGAA AGGGACACTT ACGGCAGCAG CAACATGCTA ATGTACAACA TTTCCAATGG CTTGAATGAC TCTGGACTTT
TGTGA

>Vigan.07G122500.01
MTKSSTEKNG LKKGPWTPEE DQKLIDYIQK HGHGKWRTLP KNAGLRRCGK SCRLRWANYL RPDIKRGRFS FEEEEAIIQL
HSVLGNKWST IAANLPGRTD NEIKNYWNTH IKKKLFKMGI DPVTHAPRLD VLQLASILNT SLFNSSPQFN YPFLSGRSVI
NSSQLLSLLS TLLSCQSRNN PDNVLNHNNF HQNDNQLLQN QPQCTQMQLA DTLQTFQPNQ PQVSLQENLI AKSNNPLNVD
HQLMKSKLEN QISPVATSFT HQNTLPNLWH YDNISDLQIA QSSSAMQCFS SPKFNSIFNS LLENQNLCNN EGMPNFNLSS
LLSSTTSSSS PSTLNSSSST TFVNGTTEDE RDTYGSSNML MYNISNGLND SGLL*