VIGGS:GBrowse

Vigan.07G114200.01

Basic Information:

Name:	Vigan.07G114200.01 Multiple alignment Variant Information
Position:	Chr07:10597826..10599550 (- strand)
Length:	1725

Functional Information:

Description:	Similar to Uncharacterized protein. [I1LUS1, Glycine max]
InterPro:	Alpha crystallin/Hsp20 domain (IPR002068)
InterPro:	HSP20-like chaperone (IPR008978)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.66,1.21,12.00,15.31,1.03,11.60,4.78,24.92
Arabidopsis thaliana homolog:	AT5G54660.1

Automatic updates:

Name:	NM_001249009 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative heat shock protein (LOC100306244), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:10597826..10598004 (- strand)
Length:	179
Type:	three_prime_UTR

Position:	Chr07:10598005..10598273 (- strand)
Length:	269
Type:	CDS

Position:	Chr07:10598881..10599190 (- strand)
Length:	310
Type:	CDS

Position:	Chr07:10599191..10599550 (- strand)
Length:	360
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.07G114200.01 class=Sequence position=Chr07:10597826..10599550 (- strand)
AATTAAGCCA AAAATCATTC CTATAAGGGT TCACAGATTC TGCTAGAGCA TCTATCAGTT GTCAGAGGAC TTTGACTTGA
TTGGTATCCC TTTCCATTTT TCACATCTTG TGTTAGACAG CCAAAATGCA TAGGGATACC ACATATCCTT TAGCTATACG
CAATATGCCT GACATGGTTT CTCTTTTGAT GGAAGAAAAA TTTAGAAAAG AAAATATTCC TTCCTTGCTT TACAGCCCCC
AAATATGCCA AAGGAATTTG TTCTGTGTTT CATTAGATGG TTTCTCTTAC ACTATAAGAG AAAGGCAACA AAACTCTCTC
TTCACCAGAG ACTCACAATT ATTCAGTTTT CCTAGCATAG ATGACTAGTT CTAACAAGAG GCTTGAGGTT CAAACAGAAG
ATCAAACTCC ACATAAATGG TGTGTTTCAC TGGGAGAAGA GCCTTTCAAA AGATTCTTCA GCCAGACTAA TCCAACAGTG
CACAAGGTTT TTGGTGATGG ATCACTTTTC AGTCCACTGT TGTTTGGCAA GTTCTTTGAT CCTTCTGATG CCTTCCCTCT
ATGGGAGTTT GAGTCAGATG TATTGTTATC TCATTTAAGG AGCTCCGGCC AAAGCACTGT GGATTGGTGT CAGACAGCTG
AAGGCTACAT ATTAAAAGCA GAAATACCGG GTAAGGCAAA CAGCTTTTTA GTTACCCTTA TATTGTAAAT TGAATATATG
TTAAACAAAT TATGCTACAA TGAAACTGCC CCATCATTTT ATAGATCTGA AAGACAAAAT AGGATCTCAG AACTGGAGGA
ACTATATAAA ATTTGCAAGC ACCTAAGGAG AGAGAGCCTT TACCTTGCAT CAAGAATTTT CTTTTCTTGT ACCAATGGGT
AGTAACCTAT GAATAAATAA TATAGATTCT AACAGTGTAA CACTGTCACC TAACTATATC TAATCACAAA CTATCATGTA
TGAGTATGGT TTCGATTAGT TGATAGTGCA AACTGATGGA TCTTTTAAAG TTTTGAGTTA AGGATGATGT CAATCTTTTA
TTATGAGATT AAACTCAGGT TTTGTTGGTG TTGAAACTTT CCAATGAATT TTCCTTCAAA AGATCCATCA CAAACTTATA
TCAACTCATA TCAATATGTT TATTAAAGTC ATACCAAATA ACGAAATAAA TGAACTTGAG CCGATTGGAG TTGATGGGGC
CAAGTTTCCA TAGATTCAAT TAAGAAAAGT GCTTAACTAG ACAAAATTTC TGTGACACCA GTGGTTTGTC AAAACAGGAA
CTGGAAAAAA TAACATTCAA GTCGTTGTTG ATAAGGGGAA GGTTGTGGAA ATTAGTGGAC CGTGGAAGCA GCAAAGAGAC
TCAAAGGCCC ATGACTGGAG GTGTGGCCAT TGGTGGGAAC ATGGATATGT GAGAAGGCTT GAGATGCCAG AGGATGCAGA
TTGGAAGAAT ATAGAAGCAT ACATACATAA TGACATATAC TTAGAAATAC GTATTCCAAA GAGCAAACAG GGTCGTGATC
TTCCTCAGGG AAAGGATGTG GCTTGAACAT GCAGAAGCAG TGTAAATTTA AGAAATAACA GGTGGAGACC AACCAGAGTT
TCTCACGATC TAGTAGCAGC TCCTATGCAA ATTAATACCA AACATTTAAC AAAGTTATAA AACTCTCAAA TCTCAAACTA
ATGTCAGCCA GCATGAGAAG GCCTTCTGAT GATGTATAAT ACACA

[show][hide][copy]TRANSCRIPT

>Vigan.07G114200.01
AATTAAGCCA AAAATCATTC CTATAAGGGT TCACAGATTC TGCTAGAGCA TCTATCAGTT GTCAGAGGAC TTTGACTTGA
TTGGTATCCC TTTCCATTTT TCACATCTTG TGTTAGACAG CCAAAATGCA TAGGGATACC ACATATCCTT TAGCTATACG
CAATATGCCT GACATGGTTT CTCTTTTGAT GGAAGAAAAA TTTAGAAAAG AAAATATTCC TTCCTTGCTT TACAGCCCCC
AAATATGCCA AAGGAATTTG TTCTGTGTTT CATTAGATGG TTTCTCTTAC ACTATAAGAG AAAGGCAACA AAACTCTCTC
TTCACCAGAG ACTCACAATT ATTCAGTTTT CCTAGCATAG ATGACTAGTT CTAACAAGAG GCTTGAGGTT CAAACAGAAG
ATCAAACTCC ACATAAATGG TGTGTTTCAC TGGGAGAAGA GCCTTTCAAA AGATTCTTCA GCCAGACTAA TCCAACAGTG
CACAAGGTTT TTGGTGATGG ATCACTTTTC AGTCCACTGT TGTTTGGCAA GTTCTTTGAT CCTTCTGATG CCTTCCCTCT
ATGGGAGTTT GAGTCAGATG TATTGTTATC TCATTTAAGG AGCTCCGGCC AAAGCACTGT GGATTGGTGT CAGACAGCTG
AAGGCTACAT ATTAAAAGCA GAAATACCGG GAACTGGAAA AAATAACATT CAAGTCGTTG TTGATAAGGG GAAGGTTGTG
GAAATTAGTG GACCGTGGAA GCAGCAAAGA GACTCAAAGG CCCATGACTG GAGGTGTGGC CATTGGTGGG AACATGGATA
TGTGAGAAGG CTTGAGATGC CAGAGGATGC AGATTGGAAG AATATAGAAG CATACATACA TAATGACATA TACTTAGAAA
TACGTATTCC AAAGAGCAAA CAGGGTCGTG ATCTTCCTCA GGGAAAGGAT GTGGCTTGAA CATGCAGAAG CAGTGTAAAT
TTAAGAAATA ACAGGTGGAG ACCAACCAGA GTTTCTCACG ATCTAGTAGC AGCTCCTATG CAAATTAATA CCAAACATTT
AACAAAGTTA TAAAACTCTC AAATCTCAAA CTAATGTCAG CCAGCATGAG AAGGCCTTCT GATGATGTAT AATACACA

[show][hide][copy]CDS

>Vigan.07G114200.01
ATGACTAGTT CTAACAAGAG GCTTGAGGTT CAAACAGAAG ATCAAACTCC ACATAAATGG TGTGTTTCAC TGGGAGAAGA
GCCTTTCAAA AGATTCTTCA GCCAGACTAA TCCAACAGTG CACAAGGTTT TTGGTGATGG ATCACTTTTC AGTCCACTGT
TGTTTGGCAA GTTCTTTGAT CCTTCTGATG CCTTCCCTCT ATGGGAGTTT GAGTCAGATG TATTGTTATC TCATTTAAGG
AGCTCCGGCC AAAGCACTGT GGATTGGTGT CAGACAGCTG AAGGCTACAT ATTAAAAGCA GAAATACCGG GAACTGGAAA
AAATAACATT CAAGTCGTTG TTGATAAGGG GAAGGTTGTG GAAATTAGTG GACCGTGGAA GCAGCAAAGA GACTCAAAGG
CCCATGACTG GAGGTGTGGC CATTGGTGGG AACATGGATA TGTGAGAAGG CTTGAGATGC CAGAGGATGC AGATTGGAAG
AATATAGAAG CATACATACA TAATGACATA TACTTAGAAA TACGTATTCC AAAGAGCAAA CAGGGTCGTG ATCTTCCTCA
GGGAAAGGAT GTGGCTTGA

[show][hide][copy]PROTEIN

>Vigan.07G114200.01
MTSSNKRLEV QTEDQTPHKW CVSLGEEPFK RFFSQTNPTV HKVFGDGSLF SPLLFGKFFD PSDAFPLWEF ESDVLLSHLR
SSGQSTVDWC QTAEGYILKA EIPGTGKNNI QVVVDKGKVV EISGPWKQQR DSKAHDWRCG HWWEHGYVRR LEMPEDADWK
NIEAYIHNDI YLEIRIPKSK QGRDLPQGKD VA*