GBrowse Details

Vigan.07G108000.01

Basic Information:
Name: Vigan.07G108000.01
Multiple alignment
Variant Information
Position: Chr07:9804005..9811275 (- strand)
Length: 7271
Functional Information:
Description: Similar to Uncharacterized protein. [Q8LJR5, Glycine max]
GO: Biological Process: GTP catabolic process (GO:0006184)
Biological Process: intracellular protein transport (GO:0006886)
Biological Process: nucleocytoplasmic transport (GO:0006913)
Biological Process: signal transduction (GO:0007165)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Biological Process: protein transport (GO:0015031)
Cellular Component: intracellular (GO:0005622)
Cellular Component: membrane (GO:0016020)
Molecular Function: GTPase activity (GO:0003924)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTPase superfamily (IPR001806)
Ran GTPase (IPR002041)
Small GTPase superfamily, Rho type (IPR003578)
Small GTPase superfamily, Rab type (IPR003579)
Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, Ras type (IPR020849)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:64.90,33.69,28.00,27.12,29.64,38.70,29.86,29.31
Arabidopsis thaliana homolog: AT1G06400.1
Automatic updates:
Name: NM_001249043 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small GTP-binding protein (LOC547655), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249558 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499822 (LOC100499822), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:9804005..9804520 (- strand)
Length: 516
Type: three_prime_UTR
Position: Chr07:9804521..9804956 (- strand)
Length: 436
Type: CDS
Position: Chr07:9810740..9810960 (- strand)
Length: 221
Type: CDS
Position: Chr07:9810961..9811275 (- strand)
Length: 315
Type: five_prime_UTR

>Vigan.07G108000.01 class=Sequence position=Chr07:9804005..9811275 (- strand)
GGATCGGAAG AGAAAAATAA AGAAAGAAAG GAAATAGAAG AGAAGACAAA AGAAAAGAAA AGGAAAGGAA CGAAAGGGTT
TGGCAGAACA CGATCCCCAC ACTTCAGGGC AACCTTGTTT GGAGAACCTA AGTTTCAATA CCTTTTCTCT TTCCGCAAGA
AAATTCAAAA TTCCAATTCC GCAAATCGAA AATTCCCTCG CTTCTTTGCT CTTTCTCTCT CTCTCTCTCT CTCTGTCTTT
TTCTGTAACA TCGTAATCGA TCAGTTGAAA GCTAAGAAGA GAGTGAGTTG GAGAAGGTTC TGGTAGGATC CATCGATGGC
GGGGTACAAG GCCGATGACG AGTACGATTA CCTTTTCAAG CTGGTTCTGA TCGGTGATTC CGGCGTCGGG AAGTCCAACC
TTCTCTCGCG CTTCACGCGG AACGAGTTCA ATTTGGAGTC CAAGTCTACC ATAGGAGTTG AGTTCGCCAC CAAGAGTTTG
AATATCGATT CCAAGGTCAT CAAGGCTCAG ATTTGGGACA CCGCTGGCCA GGAAAGGTCT CTTTTCTTTT CCATTCAATT
GCTCTTTCTA CAAACTTCGA TATGTCTTTT TCATTGGAAC TGCTTTCTTT GCTGCTGCTG TTATTTCCTA TTTGTGTTTT
CAATTATTCG GATTTTGACG GCGGATACCG CTTTGATTCA CTGTTTTGGT TGCTTGATTT AGTCGATTAA TTTCGATGAC
GTTGTGGTGA AGAATTGGAG TTTTGTTGCT CTGGTGATGC GTTTGTGGAT TTTTGCCATT TGAGTTTGTT TATGGAATTG
GAATTAGGGA TATTTTTTTG TCAGTATGAC CATAATGCAT GGACATCGTG AATCATTGTT TAGTGGTTTG AAAAACATGC
AAAAGCGCGT CCTAACATCG ATTGATTTGT GGGTTTGAGG AGATATTTTA GTGGGCAGTT TTTTTTTTTT TGAAATGTCA
TTTGGTGATA TTGCTAGGAA AGAGAAGATT GTTTCTTATA GTCCTTGTTG ATTAGGAATT TTTATTTTTT ATTTTTTGTT
CCTTTTTTAG TATAAGATCA CTTGTGCAGT GTATGTTTGG AGTGCTGATA ATGCTTCAAT TGATAAAAAG GACATTAGAT
TGGTTGTGGT AACAGGTTAT TTTCCAATTG ATTATGTAAA CTGCTTGATT ACATCATAAA ATGTTTAATT TTTCGTTGCT
CACCTCCTAT ATTGATTTGT ATATTTCAAT TTTTTTTTAT ACTTAGAGTG TGTGCGTGTG TGTATGTATT TCTATCGAAG
TTCTTAACCC CAAAAGGTGG TGTGGAGTAA GTGAGTGACC TCAAAATAAT ATTACAGGAT AGCGGGATGA CTGCTATTTC
TTAAAATACA CTGCAAAAAT TATGCTGCAC TTACATTCGT ACTAAAAATA ATTATAAAAA TATAAAATTA AAGATATTCA
TATTAGTGAT TAACTGTCAG CATTTGATGG CTAAACACTG TCTTAAACAG CAAGGCTGAA ATGGTGATGG CCTGGCCAGT
ACAGTTTTGA GCATGCTGGA AACTGGGTAG CGAAAGATGT GTGCCAGTAA ACTGGCCAGA CATAATGTGT GCTGCAAAAA
TGTTTCCAGA GAGAGCTGAA CTTAATTGGG GATGATGAGG CTAAGGTTTC AGATTTTGCA GTGCACAAAT GATGAGGGTG
GGAGGGGGGA AAGGGTTTCT GTTCTTGGTT AAATGAAGGG GTGATGATGA GAGGGGAAAG AGCTTCTGAC AGTTTCTGGC
TTTATTCCAC GGCCACTCAA TGGTGGTCTT TCATGGGAAC ATTTCCTCAA GTTTTGGTTA AGAAAATAGA CCAGACTGAT
TGCTTCAGCT TAAAATTGGT GAGCGGGTTA GGTGTCTAGT GCAAAACCGT CTAGAAAATA ACTAGATAAA CTGGACAAAG
AAAAGAACTA GACGTACAAT TAGGTGAAGT GGTTCACACA AGTTTAAATT TATTTATTTT TCTTTTTCTT ATTTAACTAA
AAGTATTTGT TAATGCTTAC TGCTTGACTT AAAGTGTTTG GTACGACTAG ATGATAAGCT AGTTGGTAAA TGTTAAATGG
CATAAAGTAA GTCTTATTAT ATGAATAAAA TTTTGTGTTT TCTAGATCAA AATGTAGTAT TATGCAATTA TAATTTTAGA
TTTTTAAAAA TAATTCAATT TTTTATTAAA AAATTTAGTG CTTCTATTTA TTTTTCAAAG AGTTGTATAT GATTGTTTTT
TTGGACAAGT CATTTTATTT ATAAGCTAGT TAATCTAATG AGTACTAATC AAATTTTATT TTTATTTTTT TGTAAATTTA
AATATTTTAT TTCTCAATTT AAATTACTGT TACATCAAGT TTCTCTTTCA TAATTTTTAT TGTGTCTAAT TTTTCATAGG
ATTATGTAAT GAGACATTAG TTACTTCAAT TTGTAATGAT AAATATATTT TTTCAATTGT CCAATAATTA AAATAAATAT
TTAATATTGT TAGAATATTT ACCCTAATTA TCATGATTAT ATTGTGTCTA GAGTTACCCT ATTTATCATG ATTATATTGT
GTCTAGAGTT ACCCTATTTA TCATGATTAT ATTGTGTCTA GAGTTACCCT ATTTATCATG TATTCTTGTA TCAATTTATT
TTTATAAACA GAAGATTATG AGAGGATCAA TTAAGCCCTC AAGGTTGTCT GAGTCTCTTC CTACTCTGTC TTTGTTGCCG
CCGGTGGCCA GCGCCGCCAC CGGCAACCTT AAAAATTTCA TCTTTTCTTA AATACCTCAA TGAGCAGTCA TGTTCTGGTT
TCTATCTAGT CTCCAAACCC TAGTTGCTGT CCGCAATCGT CTGGCATTGT TTGCCGCTGT CTGGTGTCGT TTGCCATTGC
CTGGCATCGT TTGTCGTTGT CCACTTGGTA CTATTTTTCC ATTATGAGGA GTTGTCCACA TAAGTTTTTC ACCATCAACC
TCTGTTTACT GTCATTCCAA CGTCGTCTGC TAATGCCCGC CACCGACCAC CGCCACAGTT TAGTCCGACG ACCAATGGAT
CTGGATTGTC TCCTTGAGCC ATGGTCAACC ATGCCTGTGT CGAGGGCTAG TTCTCATCCA AGCACATGCG CCACATCAGT
TCAACCTTCG TCGCCACTGC CGTCTTGTTT TCTCTGGCGA AGTTAGGGGT TTTGTGCACA TCAAGGAGTG TGACCCATCC
CTGGTTGTCG CTGCCATTCG TCTTGCTGGA CCAAAAGAAA AAAAATATTC TTTGTTTGAG CATTGTTCCT TAGCCTCTTT
AACGTGTGTT TAGCTTTGCA TATTGTAATG TTCGTGATGG CTTGTGTCAT TTATTTACAA GTCTCCAAGG AGAGTCAATG
CTATTAGTTG GTTAACACCA AGGAATTTCA ACGCCAAAGT CATAGGTTGA AGGTTCCTCA TGGCACGAGG GGAGTCTATT
TCTGTCAAGA TTCAGAATCT TAGTCAAACA ATTTCACCCG TCCCTTGTCA GATCTGTTTT TGGATGCTTT GATGAATAAA
GGAGACCATT ATGATTTTTC ACCTTCACGA TTTGTCATGG ATGCGTCGTC ATTTTCGTAG TTTGCCGTGA GGGGGAGTAT
GTTTCCCGCC ACTACAATAT GTTTCCAGCC ACTTCATGTC CTATCATCAG TAGTCCCTGC AGGCTCCATC AGTCAGTGAT
GGCAATTTAA TCCCTACAAG TCCCATCAGT CAGTGATGAC AATTTAATCC CTACAGTGAG GGGGAGTATG TTTCCAGCCA
CTAGTTAGAC ACTAGTCAGA GGCCCCAACA AGTCAGAGAT GACAATCCCT GCTTTTAGCC ACTGTAGGCC CCAATTAGTC
AGAGATGGCA GTCCCTGCAG TTTTGTCGCT TTCAGCCACT GCAGGCCCCC AATTAGTCAG AGATGGCAGT CTCTGCAGTT
TTGTCGCTTT CAGCCACTAC AGGCCCCAAC TAGTCAGGGA TAGCAGTCCC TACATTTTTG TCGCTTTTAG CCATGCAGGC
CCCATCCTTA CTTGATGGCA ATCTAGTCTT TGCAGTTTGT CGTTGTCTAT CACTCATCAT TTACTTTTGA TGGAAATCAA
TTTTATTAAA GTCATTCTAC TTGAAGGTTC ATGGTGCTAG ATGAAGTTTC GTGGTTGTCC AATATTATTA TCCATAAGCT
TATGAGGAGT CTCTTTGGTT ATGCTGGTTT GTGAGTCCAA TTTTGTTTAT AGACATTCTC TCTTGATGGT CTGAAGCATA
TGTGCATCTT GTTCGAAGCC AAAGTTACCA TGTATATTGT CTCGACATTT GAGACAAGTT CATTTTGTTG GAGTGAGTTT
ATTTATTTCA AGCTTGGTAC ATTACATACA ATTTGTATGC TCCAGAGGGG GAGTGTTACA ATATTTACCC TAATTATCAT
GATTATATTG TGTCTAGAGT TACCCTATTT ATCATTATTA TATTGTGTCT AGAGTTACCC TATTTATCAT GATTATAGTG
TGTCTAAAGT TATCCTATTT ATCATGTATT CTTGTATCAA TTTTTTTTTA TAAATAGAAG ATTATGAGAG GGATCAATTA
AGCCCTCAAG AATTATTTTA CCGTTTTAAT CTCATGTAAT ATCTTAAAAG TGAAATTGAT CAAAAGTAGA GAAATGTAGA
GAGTGTGAAT ACGGGAGGGA CGAAAAAGTT AATTTTTGTC TCTATAAAAT TAAGAATAGG TAATAATAGG TAAAAAAGAA
ATCTAAGGAT AATAAAAATA TATATTAAAA TATAAGGATA GTAATGGAAG GAAATTACAC ATGTTTCAGA GCTAGAAATT
AGTTGAAGTA GCTTGTAACT TACAAATTAT AATTTTCTAA AATAAGCTAC TTTAATGTAC CATAGTAAAA ACTTTTGTTT
GGTCAAACTA GCCTATAAGT TAGTCAAATA AGTTACTGGC TAACTTATTT GTTTTACCAA AGACACTGTA TCCTGATAGT
GAGTAGGATG TTGTACAATT TACAATGTAC AGTGTCACTT CTGTGAGGTA TTACTCTTTG TATTATTTAG AGTGACCCAT
AAGGAGCTTC TAACATTTTT TTGAGGATTA AGTTCCTTAA CTAAATAGGA AGTAATATAG TAAACAAATT ATATAGCATA
ACATGAAGTT GCTATTATCT TATTGTTTTC ACAGCCTTTT GAATTTTTCT CTTAATTTAT TGTTATATAT ATTCAAACAT
CTAGAACCTG AACTTTTGTC CTAGGAATAT GTCATTTTTA CTTCAAATTC CCTTATTTGG ACGGCAGTTC AATTTGGCTC
TGAATATACA TACGCATCCT TCAATCCTCT TCCTTTTCAA TCTATGTGCC CTTGGTGAAC TTATCCTCAA TACCTAGGTC
TTGATTAACT TTTTATATGA CTAGGATAGT AGGGTGCAGC TGATTACTTG TTTGACACGT TCTGTTTGTT ATCCTAAAAT
ATCTCTATAT AATTATAATT TATAGTACAC TAAGGGACAT TTGGAAGATA TTATTTGGGC ATATAAAAGT GGCTTTTGAC
CTTTCTATAG TTTTTTTTTT AAAAAATAAA ATATTCTTGC TAAGCAGGGC CCGGGTCGCT TATTAAATAA TTAATAGGAC
AAAGTTTTTA TTGAAAGTCA TATAGCAACG GATTAAAAAA TTTTAAGGGA GGCCATGTCA ACGCATCTCA ACAAAAGCCT
TTTTCCTTTT AAGTCCTTAA GCAGTGTCGT TAAATTTCTT TTTAATTCCT TCATGGAACA GCCTATTAGA TAAGATCCTT
TTATTCTTTC AGCTTACTCA AATAAGTTTC ACATTCAAGC TTATGAATAA GTTCTTGTCT GTGAGAGCTC ATTCTTGGTT
GCATAATTAA TATATTTAGC GAGTTGCATC CTAAGTAGAT ATATGGAAAG TAGAGTTATG TATGATGGGG CTGCTCTAGT
TGATTTGACT CCCGTCAAAC GGGAGGTTCC TATTTCTTAG TTCACATGAA CACCTGCTCC CCTAAAATCA GTTATTTATC
ACTTAAAAAT TGAAATGAAC TTAAAGACAT CAGTATTCAT TAGTACGTAA GTGAGCAGAT TAATATTGTA AGACTCCAAT
TTGATTGGAA AGAACAGTAC CACTACTTCT TAAGATGCTG CGCTGAAGTT GTCTTATAAA AAGCATCCTC GCTTTTTCTC
TAATGCTGAT CATTGCAAGT ACAATGGAAG TTTCTGATGA CATGTCTACG AGAAGCTGAA CTACACCTAA ATTTATGTTG
CAATGTAGTT ACTAAAGATT TCTCTATCGC TGTGGCAGTC ATTGAATCCA CTTATTTGAC TTTTGTGCTG CTATATTAGG
TACCGTGCCA TTACTAGTGC TTACTACCGA GGAGCTGTTG GTGCCTTACT TGTCTATGAT GTCACACGCC GTGCCACATT
TGAGAATGCT GCAAGATGGT TGAAAGAGTT GAGAGATCAC ACAGACCCCA ACATTGTGGT CATGCTTATT GGAAATAAGT
CAGATCTTCG ACACCTTGTT GCTGTTCCAA CAGAAGATGG GAAATCTTTT GCAGAGAGGG AATCTCTGTA CTTCATGGAG
ACTTCTGCTT TAGAAGCAAC CAATGTTGAA AATGCTTTTA CTGAGGTTCT TTCTCAGATT TACCGCATAG TGAGCAAGAG
AGCAGTTGAG GCTGGCGACA ACGCCAGTTC CTCCACTGTC CCGTCTAAAG GACAGACTAT AAACGTGAAA GACGATTCCT
CAGTTTTGAA GAAAATTGGA TGCTGCTCGA ACTAGATGCT TCATCTATGG CAGTGGTTTT CATGGCCTGT TTCATCTTGT
AAATGCCTAC ACTGGAATTG GGATATCGTG TAGAATAAGG CTAGTCTTGC ATATTATTTT GAGCAGTCTT TACAATTTAC
AAGCATCAAC CATACGCAGG ATTTATGTTT CGTAAACCGG TCATTCTAAA ACGTGTTTGA AACAAATAGG TCTACACCCA
AGTTCATCAT ATAGTTTTAA GTTTTATGTG CAGGATCTTG ATATTTGCTA TTCTCTAATT ATGATGCAGC CAGTGGCAGT
TCGAACATCT ATTTTAGAAT TGAAGTTAAG GTATGGAGCC CTTCTGTTTG GTTTCGTTGA AGTGTTCCCA GATCATATGG
GTTGTACATG ATCAGAGTTG AAGTTATTTT TAATTGCTGA ATATAAAGAT TGGAATTAAA ATAATATGTT TCTAAAATTA
TTATATCGGC AAAATATGTT TTATTTGAAA CCAAATTAGT ATAATTTTCT TTCTCGTTTT TTCTTCCTTC G

>Vigan.07G108000.01
GGATCGGAAG AGAAAAATAA AGAAAGAAAG GAAATAGAAG AGAAGACAAA AGAAAAGAAA AGGAAAGGAA CGAAAGGGTT
TGGCAGAACA CGATCCCCAC ACTTCAGGGC AACCTTGTTT GGAGAACCTA AGTTTCAATA CCTTTTCTCT TTCCGCAAGA
AAATTCAAAA TTCCAATTCC GCAAATCGAA AATTCCCTCG CTTCTTTGCT CTTTCTCTCT CTCTCTCTCT CTCTGTCTTT
TTCTGTAACA TCGTAATCGA TCAGTTGAAA GCTAAGAAGA GAGTGAGTTG GAGAAGGTTC TGGTAGGATC CATCGATGGC
GGGGTACAAG GCCGATGACG AGTACGATTA CCTTTTCAAG CTGGTTCTGA TCGGTGATTC CGGCGTCGGG AAGTCCAACC
TTCTCTCGCG CTTCACGCGG AACGAGTTCA ATTTGGAGTC CAAGTCTACC ATAGGAGTTG AGTTCGCCAC CAAGAGTTTG
AATATCGATT CCAAGGTCAT CAAGGCTCAG ATTTGGGACA CCGCTGGCCA GGAAAGGTAC CGTGCCATTA CTAGTGCTTA
CTACCGAGGA GCTGTTGGTG CCTTACTTGT CTATGATGTC ACACGCCGTG CCACATTTGA GAATGCTGCA AGATGGTTGA
AAGAGTTGAG AGATCACACA GACCCCAACA TTGTGGTCAT GCTTATTGGA AATAAGTCAG ATCTTCGACA CCTTGTTGCT
GTTCCAACAG AAGATGGGAA ATCTTTTGCA GAGAGGGAAT CTCTGTACTT CATGGAGACT TCTGCTTTAG AAGCAACCAA
TGTTGAAAAT GCTTTTACTG AGGTTCTTTC TCAGATTTAC CGCATAGTGA GCAAGAGAGC AGTTGAGGCT GGCGACAACG
CCAGTTCCTC CACTGTCCCG TCTAAAGGAC AGACTATAAA CGTGAAAGAC GATTCCTCAG TTTTGAAGAA AATTGGATGC
TGCTCGAACT AGATGCTTCA TCTATGGCAG TGGTTTTCAT GGCCTGTTTC ATCTTGTAAA TGCCTACACT GGAATTGGGA
TATCGTGTAG AATAAGGCTA GTCTTGCATA TTATTTTGAG CAGTCTTTAC AATTTACAAG CATCAACCAT ACGCAGGATT
TATGTTTCGT AAACCGGTCA TTCTAAAACG TGTTTGAAAC AAATAGGTCT ACACCCAAGT TCATCATATA GTTTTAAGTT
TTATGTGCAG GATCTTGATA TTTGCTATTC TCTAATTATG ATGCAGCCAG TGGCAGTTCG AACATCTATT TTAGAATTGA
AGTTAAGGTA TGGAGCCCTT CTGTTTGGTT TCGTTGAAGT GTTCCCAGAT CATATGGGTT GTACATGATC AGAGTTGAAG
TTATTTTTAA TTGCTGAATA TAAAGATTGG AATTAAAATA ATATGTTTCT AAAATTATTA TATCGGCAAA ATATGTTTTA
TTTGAAACCA AATTAGTATA ATTTTCTTTC TCGTTTTTTC TTCCTTCG

>Vigan.07G108000.01
ATGGCGGGGT ACAAGGCCGA TGACGAGTAC GATTACCTTT TCAAGCTGGT TCTGATCGGT GATTCCGGCG TCGGGAAGTC
CAACCTTCTC TCGCGCTTCA CGCGGAACGA GTTCAATTTG GAGTCCAAGT CTACCATAGG AGTTGAGTTC GCCACCAAGA
GTTTGAATAT CGATTCCAAG GTCATCAAGG CTCAGATTTG GGACACCGCT GGCCAGGAAA GGTACCGTGC CATTACTAGT
GCTTACTACC GAGGAGCTGT TGGTGCCTTA CTTGTCTATG ATGTCACACG CCGTGCCACA TTTGAGAATG CTGCAAGATG
GTTGAAAGAG TTGAGAGATC ACACAGACCC CAACATTGTG GTCATGCTTA TTGGAAATAA GTCAGATCTT CGACACCTTG
TTGCTGTTCC AACAGAAGAT GGGAAATCTT TTGCAGAGAG GGAATCTCTG TACTTCATGG AGACTTCTGC TTTAGAAGCA
ACCAATGTTG AAAATGCTTT TACTGAGGTT CTTTCTCAGA TTTACCGCAT AGTGAGCAAG AGAGCAGTTG AGGCTGGCGA
CAACGCCAGT TCCTCCACTG TCCCGTCTAA AGGACAGACT ATAAACGTGA AAGACGATTC CTCAGTTTTG AAGAAAATTG
GATGCTGCTC GAACTAG

>Vigan.07G108000.01
MAGYKADDEY DYLFKLVLIG DSGVGKSNLL SRFTRNEFNL ESKSTIGVEF ATKSLNIDSK VIKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRRAT FENAARWLKE LRDHTDPNIV VMLIGNKSDL RHLVAVPTED GKSFAERESL YFMETSALEA
TNVENAFTEV LSQIYRIVSK RAVEAGDNAS SSTVPSKGQT INVKDDSSVL KKIGCCSN*