GBrowse Details

Vigan.07G072900.01

Basic Information:
Name: Vigan.07G072900.01
Multiple alignment
Variant Information
Position: Chr07:5874821..5876108 (- strand)
Length: 1288
Functional Information:
Description: Similar to CENTRORADIALIS-like protein 3. [G7Z0B6, Glycine max]
InterPro: Phosphatidylethanolamine-binding, conserved site (IPR001858)
Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.11,0.03,0.00,0.12,0.20,2.11,0.00
Arabidopsis thaliana homolog: AT2G27550.1
Automatic updates:
Name: NM_001289240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CENTRORADIALIS-like protein 3 (CEN3), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289283 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein CENTRORADIALIS-like (CEN4), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:5874821..5875090 (- strand)
Length: 270
Type: three_prime_UTR
Position: Chr07:5875091..5875311 (- strand)
Length: 221
Type: CDS
Position: Chr07:5875417..5875457 (- strand)
Length: 41
Type: CDS
Position: Chr07:5875693..5875754 (- strand)
Length: 62
Type: CDS
Position: Chr07:5875843..5876046 (- strand)
Length: 204
Type: CDS
Position: Chr07:5876047..5876108 (- strand)
Length: 62
Type: five_prime_UTR

>Vigan.07G072900.01 class=Sequence position=Chr07:5874821..5876108 (- strand)
AAAGCAGCAA CATTAACTAT TTGGTTGCCA CAGCTTCAGT CCCACCTTCA AAGTCTGTAG CCATGAATAT GATATCAACA
GACCCTCTTG TGATTGGGAG GGTGATCGGA GATGTTGTGG ATCTTTTCTC TCCAACTGTG AAAATCACTG TCTCCTACAA
CAACAATAAG CAGGTCTATA ACGGTCATGA GTTTTTCCCT TCCTCAGTAA CCAACAAGCC TAAGGTTCAG ATTCGTGGAG
GCGACATGAG ATCCTTCTTC ACTCTTGTAC CATCTTCTTC TTTCACTCCA CCCTCCTTCA TCACTTCAAT CTTTTCATGC
ATCTCACTGT TCCATTTCCA TGCCTTTCTT TCAGCTCATG ACAGATCCAG ATGTTCCTGG CCCTAGTGAT CCATATCTCA
GGGAACATTT ACACTGGTAT GATACTAAAT AAATAAATTA AAAAAACAAA AAAATCAGTA AACCATCACA TGCAGAGTTT
ACTTGACTTG TATTCATTAT TGGTTTATGA TTTCAAACCC TACCACTGGG TCGTCTAGTT CTTTTTTTTT TATTTTGCCA
TGCATGAGGA AGAGCTTCAG ATGCAGCACA TGCATTTGCA TAGGTGATTT CATCTGAAAC AAAGCGTCTG ACCATATTTA
ATAACTCACA GGATAGTCAC GGACATCCCT GGCACAACGG ACACCACATT TGGTAAGTTA TTGAATCTTT TTACAGACAC
ATGCATAGCA GAGAGAGAGT AACTTTCATA AAAATCTATG TATATGTTTT TCTTTTTTGT AACATGCAAT GGAACAGGAA
ATGAGGTGGT GAACTATGAA ATTCCAAGGC CAAACATAGG CATCCATAGG TTTGTGTTCC TCCTTTTCAA GCAGAAGTGC
AGGCAGGCAG TGATGAAAAT ACCAAGTTCT AGGGACCTCT TCAACACGAG GAGCTTTGCA GAGGAGAATG ACCTGGGGCT
TCCTGTGGCT GCGGTGTTTT TCAATGCTCA AAGGGAAACG GCTGCCAGAA GACGTTGAGT AATGAACCAA CCCACAAAAA
GTGTCACCAT GTGGTTATCA CTAGTAAAGC CTATATACCT GTCCACTGTA GTAGTGTCCA CCAAATAAGT CTAGGTTTCT
AAGGGTGTGT GGGGCACTTT CTCTAGTTAA ATTCGAACTT GCATGCTGAA ACTCTCGTAG CATCAACTCT AACATTCTTC
TTTCTAGTTT GGTGGTTCAG TTTGTAACTA TTTCACTTTC TATTTCACTT TCTCGTAATC TATGTCCCAG TAACCACGCA
AGTTATTA

>Vigan.07G072900.01
AAAGCAGCAA CATTAACTAT TTGGTTGCCA CAGCTTCAGT CCCACCTTCA AAGTCTGTAG CCATGAATAT GATATCAACA
GACCCTCTTG TGATTGGGAG GGTGATCGGA GATGTTGTGG ATCTTTTCTC TCCAACTGTG AAAATCACTG TCTCCTACAA
CAACAATAAG CAGGTCTATA ACGGTCATGA GTTTTTCCCT TCCTCAGTAA CCAACAAGCC TAAGGTTCAG ATTCGTGGAG
GCGACATGAG ATCCTTCTTC ACTCTTCTCA TGACAGATCC AGATGTTCCT GGCCCTAGTG ATCCATATCT CAGGGAACAT
TTACACTGGA TAGTCACGGA CATCCCTGGC ACAACGGACA CCACATTTGG AAATGAGGTG GTGAACTATG AAATTCCAAG
GCCAAACATA GGCATCCATA GGTTTGTGTT CCTCCTTTTC AAGCAGAAGT GCAGGCAGGC AGTGATGAAA ATACCAAGTT
CTAGGGACCT CTTCAACACG AGGAGCTTTG CAGAGGAGAA TGACCTGGGG CTTCCTGTGG CTGCGGTGTT TTTCAATGCT
CAAAGGGAAA CGGCTGCCAG AAGACGTTGA GTAATGAACC AACCCACAAA AAGTGTCACC ATGTGGTTAT CACTAGTAAA
GCCTATATAC CTGTCCACTG TAGTAGTGTC CACCAAATAA GTCTAGGTTT CTAAGGGTGT GTGGGGCACT TTCTCTAGTT
AAATTCGAAC TTGCATGCTG AAACTCTCGT AGCATCAACT CTAACATTCT TCTTTCTAGT TTGGTGGTTC AGTTTGTAAC
TATTTCACTT TCTATTTCAC TTTCTCGTAA TCTATGTCCC AGTAACCACG CAAGTTATTA 

>Vigan.07G072900.01
ATGAATATGA TATCAACAGA CCCTCTTGTG ATTGGGAGGG TGATCGGAGA TGTTGTGGAT CTTTTCTCTC CAACTGTGAA
AATCACTGTC TCCTACAACA ACAATAAGCA GGTCTATAAC GGTCATGAGT TTTTCCCTTC CTCAGTAACC AACAAGCCTA
AGGTTCAGAT TCGTGGAGGC GACATGAGAT CCTTCTTCAC TCTTCTCATG ACAGATCCAG ATGTTCCTGG CCCTAGTGAT
CCATATCTCA GGGAACATTT ACACTGGATA GTCACGGACA TCCCTGGCAC AACGGACACC ACATTTGGAA ATGAGGTGGT
GAACTATGAA ATTCCAAGGC CAAACATAGG CATCCATAGG TTTGTGTTCC TCCTTTTCAA GCAGAAGTGC AGGCAGGCAG
TGATGAAAAT ACCAAGTTCT AGGGACCTCT TCAACACGAG GAGCTTTGCA GAGGAGAATG ACCTGGGGCT TCCTGTGGCT
GCGGTGTTTT TCAATGCTCA AAGGGAAACG GCTGCCAGAA GACGTTGA

>Vigan.07G072900.01
MNMISTDPLV IGRVIGDVVD LFSPTVKITV SYNNNKQVYN GHEFFPSSVT NKPKVQIRGG DMRSFFTLLM TDPDVPGPSD
PYLREHLHWI VTDIPGTTDT TFGNEVVNYE IPRPNIGIHR FVFLLFKQKC RQAVMKIPSS RDLFNTRSFA EENDLGLPVA
AVFFNAQRET AARRR*