GBrowse Details

Vigan.07G052000.01

Basic Information:
Name: Vigan.07G052000.01
Multiple alignment
Variant Information
Position: Chr07:3719971..3724273 (+ strand)
Length: 4303
Functional Information:
Description: Similar to Uncharacterized protein. [C6T1V1, Glycine max]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Ubiquitin-conjugating enzyme, active site (IPR023313)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:52.13,36.97,43.26,47.78,57.17,80.77,54.79,56.28
Automatic updates:
Name: NM_001251736 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500474 (LOC100500474), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:3719971..3720118 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr07:3720119..3720161 (+ strand)
Length: 43
Type: CDS
Position: Chr07:3720280..3720382 (+ strand)
Length: 103
Type: CDS
Position: Chr07:3720970..3721067 (+ strand)
Length: 98
Type: CDS
Position: Chr07:3721134..3721234 (+ strand)
Length: 101
Type: CDS
Position: Chr07:3722254..3722331 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3723932..3724009 (+ strand)
Length: 78
Type: CDS
Position: Chr07:3724010..3724273 (+ strand)
Length: 264
Type: three_prime_UTR

>Vigan.07G052000.01 class=Sequence position=Chr07:3719971..3724273 (+ strand)
ATATCTACGT TACAGAAATC CCATACTATA AATACAATTC AACTATCTTT CATCTTTTGA AGTTCTCTCT TCTCTGTCTT
GTTTTTTTTT CTTCTCAATC TCACAACGCA ACCCATCCCT TCAACGCTCT CTCACCTCCC TTTCGTTGAT GGCGTCCCAA
GCAAGCCTCC TCCTTCAGAA GCAGCTCAAA GGTGTCTTTC GCTGCCTCCT CCCTCACCCA ATCCCTTCTT CTTCCTTCCT
CTGGTGCCTG TTTGATTTTC TTGCGTGGAT TCTCCGCTGT CTTCTGATCG TTCTCTCTTT TGCTTGCAGA TCTCTGCAAG
AACCCCGTTG ATGGATTTTC CGCCGGTTTG GTCGACGAAA CCAACATTTT TGAATGGAGC GTCACTGTAA TTGGGCCTCC
TGACACTCTC TAGTAAGCTC TGTTTAGTAA ATAATAACCT TTTCTTTCAC ACTAATTTTT GCGATTTTCA GTTGTTTTTT
ATGGATTTTA GATTCCCTTT GCTTGTGCAG TGATGATTTC TTTGCTTTTT GCTTTCTGGG GTTTTGGGTT TCCCCCTAAA
GATGGCCTCT TTAATTGCTT ATTTGGGGGG AGGTGTTCTT CAGAATTTTC TAGAAGTTTT CTTTTTCTGT CCTATTCGTG
TCGAATCCAA TCCATTCAGG CGGTTCTTGC ATGGACCCTT CTTGTTACTT TTTTTAATTC TCGAGATTAT TGTTGATATT
CGTAGGCTTG ATGAAAATAA TATGTATTTC TATTTATATT TGTTGCGGTT TCTGCAAACG ACGACACTTT CCTGATTTGG
TTTGTTCTTG GCTGGGTTCA TTTGATTGTA CTTGTTTTAA GAAATGATTT AAGTCAATAC TTTACTTTCC CTTATTGGAT
TGTCTTCTCT AGTTATTATT TCATTTTGTT TCTATGGTCT TTTATAGCAC TCGAGTTCTT TGTTTTACTG ACTACTTTGT
TTCCTTGTTT TGTCAATTTT TTTTTTAATT TTTGTGTAGT GAGGGGGGAT TTTTTAATGC CATTATGAGC TTTCCACCCA
ACTACCCAAA TAGTCCGCCA TCAGTGAAAT TTACCTCTGA GATATGGCAT CCCAATGGTT AGTTTGACTC ATTTTTATCT
TGCTTTCTTT AATGCATGAA ATATAAAGAT GTTCAAATTG CAGTTTATCC TGATGGGCGA GTTTGCATAT CAATTCTTCA
CCCTCCTGGT GACGATCCGA ATGGTTACGA GCTTGCAAGT GAGCGCTGGA CACCTGTTCA TACAGTATGT ACAAATAAAA
AGCAATAAAT TTAATTAATT AATTAATTTT AATAATGAGA ACTATGCCTT ATACTCAACT GGTGACTCTG CTTTGAGTTG
CTGGGTAAAT TGATTTAGTG CTAGAAATGT GAGATTATTG TTGTTTAGTA TCCCTTCCTC ATGCTTTTGT TTGATAATCA
TATGATGCAC TTGTTGTATA ATATTCCCCC TGCAGTTTGG CTATATGCAT GATGTGCTTA ATCTGAAGTC ATTCCATCAA
ATTTTTAGCT GCAAGACATA CTTAACAAAT AGAAGAAGAT AGATTTTCAA TCTTTTCATT TCATGAGTGG ATATAGACTT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATGTATGTAT CTATGTATAT
TAATAAGTGC AATTCAGTGT CCTTAATGTT GTAGATTAGT GTAGTTTAAC GTTAGTTGCT TCTGTGTGAG CCTTTGGCAA
GATATATAGC ATGTTTAGCT GCGTATCTAC CTGCTGTGTG ATCTATATCT ACTGTGATGC CATACTGTAG CTTTGTTGAA
CTTGACATTA AAATTTACGG GAACAGCATT CTAAACGCCC CAAAACACTG ATATAATGCA TTCGTATGTG GCAGAAACTA
TCTGTCTCAG TTATATATAC TAGGCTTCAT CTTCTGGCGG TTCCTCTGTT CTCTTTATAT GCATAATTAG ATCCTCTTGT
TGTGATACTG TCTTGTACTG TCAGCATTGC ATCAATGGTA GTTCACATAG TAATCATAGG ATAGAGCTCT CCATTCCGTG
CACTTTGAAT GAGAAGGAAA CTATTAGTCT ACTACTAATT TGGTGTGTTG AAAATTTCAA GGTTTTCTTG ATAATTTTGC
TGGTTTTTCT TGCTTCTTGC TAAATGTATG CCACTTCTGG TCTAGCACTG GTGGTTTGAC ATAGTACTTG TAAATATCAT
TGAAACGTGC TTATGAATTA ATATTACGTA TTCCAACTCG CAGGTAGAAA GTATAGTATT AAGTATCATA TCGATGCTTT
CTAGTCCTAA TGATGAATCT CCTGCAAATG TTGAAGCCGC GGTAAGTTTT AGCTTCTTTT TTATTTTATT TTATATCTGC
ATTGTTTCCC TCTGTCATAC TTTGGCACTT ATTTGCATCC TAGAGAAGAA AAGGTAAACT TACAATTATT TTAACTATTT
CAGCGGTTAT TTTCTCAAGG TTATGTATTT AATGTGTGGT GGAGAAATTC TGACTTATGG CCGTGGTACT TGAGCAGATA
GCTAGTTTGT ATGAATGGTG AGATGGGGGA CTGTAGATAA TGTAATTCTT CTCCTATTAG CGATAGATGA CAAAGTGAGA
TAATTTCAAT ATTTAGTATG GATGGATTTC ACGAGTGATT AAATACGGTG GAAAAATAAT TTAAATGGGA TGGTTTAATT
CGGACTTGGG TTATGATGGA AGTAGTCGTA CTCAAATTGC TGATTTAAGC AAAACCTGGA ACTTTTTTAA TTAGAGTTAT
GAAGCACAGA AACAAACAAA AGAAGCACAA GAGTGCTTCT TTTAGTATTA TTTCACCAGG CTTGGCAATG TAGCTAGTAT
TGGTAGGTTT TTTCTCAACT TAACCCTGTC CCATCTTTCA AGATACATTC AATACCCTAT GGGTCCATCA ACTTTAAAGG
TGAATCTGGA CCAGCCCCAC AAGAAAGTAT TGAAACCTGC ACCGTATAGC TCCACCCTTC CTACCTCACA TTTACGGATA
TTATGAAGAA ATTCCTGGAA GAATATTTAA ATATACAAAA TAATTAATCC AACATCTTGT ACAGTTTAGT AGCTATGTTT
GAGATACGTG TTGTACTAGT AAAAGTATGT TTTGCAGGAA CATGTTGCTT AGTATAAATT AACAATGTCT GCAGAAGTAC
CATAACTAGG CATGATACTA ATTTTTGCAT AGCTGGAGGG GGTGGGGAAC ACTCACTAGG GCTGCCCTTG TCTTCTTGAC
CTTTGGCACT AATTTACCCT GTGCCATACT GCCTCATGAC ATTATGTCTG ACACGAAAAC TAGTACCTGG TTGACTTTCT
TGATGTGTCC CGTTTGACTC AATAAAAGCA TTTAGAATTA TCAATGTCTG ATGTTGCTGG GTTGTAAAGT GTGAGGGTTG
GCTTTAGTAA GTTGTTGTGT ATGTGTGGAT ACTGTCCTGT TTTTCTACAT TGAGGATGAG TTCTTATTTC TTCTGTTAGT
TGGATATTCC TTTCACTAAC ATGTGCTGAG TTATGAGTTA TATTTTGTAA TATTAATTTT CCAATTAATT ATGTGGTATC
TGTAGAAAAT CCAAGTGTAA GTCTAAGTTT TACATTGGAT TAGATAGAAA TAAGATAAAA ATAAGAAAGT TGAAAGTAGA
AAACTCAAAA TCCATTGTCT TGTGAGAAAG TGAGAAACAT ATAAGATCCG TAAACCTCTA ATCTTAAGGT TTTGGATTGA
AAATAGTATC AATCTTTTGT GTGGATTGAA CTCTGGTCTC TTTTGTATTT ATTTTTCTGG TCAATTCTTC CCTTGATAAA
TCCATTTTAG TATCATTTGT TTGAGTACTT TGAATTGAGA ATTTGGCATT AGAAATACAT ATTGCATTCC TAAGATGTTT
TACTGATTAA TTAAAGATGA TGTGATGATG TTATGTTGCA GAAAGAGTGG AGAGACAGGA GAGATGAATT CAAGAAAAAA
GTTAGCCGTT GCGTGCGGAA GTCACAAGAA ATGTTGTGAT TTACAGCTGA ATTCTCATTC TGCTTCTGTG AACTAATGTA
TGCAGTGGTT CACATGTTAC TGTTGGTCCC AGTAGAGACT GCCATGTCTT GGAAAAACAA ACTGTATTCT AAGTGCTTTG
TCACTAGTTT TATGAGAAAT TTAGTTTGTT CATTTGCATG ACCTTATTGT TCAAATTATC ATTAGGTGCC AAGTTTTGCC
TTCTGCTTAA TTTTCTGAGT GTTGATGTAC CTGCTCCTAT ATTCTGACTT TTGTCTTTGC TTT

>Vigan.07G052000.01
ATATCTACGT TACAGAAATC CCATACTATA AATACAATTC AACTATCTTT CATCTTTTGA AGTTCTCTCT TCTCTGTCTT
GTTTTTTTTT CTTCTCAATC TCACAACGCA ACCCATCCCT TCAACGCTCT CTCACCTCCC TTTCGTTGAT GGCGTCCCAA
GCAAGCCTCC TCCTTCAGAA GCAGCTCAAA GATCTCTGCA AGAACCCCGT TGATGGATTT TCCGCCGGTT TGGTCGACGA
AACCAACATT TTTGAATGGA GCGTCACTGT AATTGGGCCT CCTGACACTC TCTATGAGGG GGGATTTTTT AATGCCATTA
TGAGCTTTCC ACCCAACTAC CCAAATAGTC CGCCATCAGT GAAATTTACC TCTGAGATAT GGCATCCCAA TGTTTATCCT
GATGGGCGAG TTTGCATATC AATTCTTCAC CCTCCTGGTG ACGATCCGAA TGGTTACGAG CTTGCAAGTG AGCGCTGGAC
ACCTGTTCAT ACAGTAGAAA GTATAGTATT AAGTATCATA TCGATGCTTT CTAGTCCTAA TGATGAATCT CCTGCAAATG
TTGAAGCCGC GAAAGAGTGG AGAGACAGGA GAGATGAATT CAAGAAAAAA GTTAGCCGTT GCGTGCGGAA GTCACAAGAA
ATGTTGTGAT TTACAGCTGA ATTCTCATTC TGCTTCTGTG AACTAATGTA TGCAGTGGTT CACATGTTAC TGTTGGTCCC
AGTAGAGACT GCCATGTCTT GGAAAAACAA ACTGTATTCT AAGTGCTTTG TCACTAGTTT TATGAGAAAT TTAGTTTGTT
CATTTGCATG ACCTTATTGT TCAAATTATC ATTAGGTGCC AAGTTTTGCC TTCTGCTTAA TTTTCTGAGT GTTGATGTAC
CTGCTCCTAT ATTCTGACTT TTGTCTTTGC TTT

>Vigan.07G052000.01
ATGGCGTCCC AAGCAAGCCT CCTCCTTCAG AAGCAGCTCA AAGATCTCTG CAAGAACCCC GTTGATGGAT TTTCCGCCGG
TTTGGTCGAC GAAACCAACA TTTTTGAATG GAGCGTCACT GTAATTGGGC CTCCTGACAC TCTCTATGAG GGGGGATTTT
TTAATGCCAT TATGAGCTTT CCACCCAACT ACCCAAATAG TCCGCCATCA GTGAAATTTA CCTCTGAGAT ATGGCATCCC
AATGTTTATC CTGATGGGCG AGTTTGCATA TCAATTCTTC ACCCTCCTGG TGACGATCCG AATGGTTACG AGCTTGCAAG
TGAGCGCTGG ACACCTGTTC ATACAGTAGA AAGTATAGTA TTAAGTATCA TATCGATGCT TTCTAGTCCT AATGATGAAT
CTCCTGCAAA TGTTGAAGCC GCGAAAGAGT GGAGAGACAG GAGAGATGAA TTCAAGAAAA AAGTTAGCCG TTGCGTGCGG
AAGTCACAAG AAATGTTGTG A

>Vigan.07G052000.01
MASQASLLLQ KQLKDLCKNP VDGFSAGLVD ETNIFEWSVT VIGPPDTLYE GGFFNAIMSF PPNYPNSPPS VKFTSEIWHP
NVYPDGRVCI SILHPPGDDP NGYELASERW TPVHTVESIV LSIISMLSSP NDESPANVEA AKEWRDRRDE FKKKVSRCVR
KSQEML*