GBrowse Details

Vigan.07G040600.01

Basic Information:
Name: Vigan.07G040600.01
Multiple alignment
Variant Information
Position: Chr07:2846427..2849636 (- strand)
Length: 3210
Functional Information:
Description: Similar to Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha. [G7IHS5, Medicago truncatula]
GO: Biological Process: protein prenylation (GO:0018342)
Molecular Function: protein prenyltransferase activity (GO:0008318)
InterPro: Protein prenyltransferase, alpha subunit (IPR002088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:109.30,84.17,30.25,29.95,33.96,37.58,35.04,33.42
Arabidopsis thaliana homolog: AT3G59380.1
Automatic updates:
Name: NM_001253320 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha-like (LOC100790130), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:2846427..2846501 (- strand)
Length: 75
Type: three_prime_UTR
Position: Chr07:2846502..2846966 (- strand)
Length: 465
Type: CDS
Position: Chr07:2847940..2848035 (- strand)
Length: 96
Type: CDS
Position: Chr07:2848147..2848267 (- strand)
Length: 121
Type: CDS
Position: Chr07:2848902..2849011 (- strand)
Length: 110
Type: CDS
Position: Chr07:2849198..2849440 (- strand)
Length: 243
Type: CDS
Position: Chr07:2849441..2849636 (- strand)
Length: 196
Type: five_prime_UTR

>Vigan.07G040600.01 class=Sequence position=Chr07:2846427..2849636 (- strand)
CCTCACTTTT GTCAAAGGTA AAAGAAAGGA ATCACATTCA CATGAAACGT CACACAGGCT TTTCATCGTA GAGAAACTCT
ATTGGGCCTA CAAAAGCAAG CCCATAAGCC CAAGGCTTAA AGCAAAAGTT AAGACCCCAG TCTAAATAGA GAGGGCGTGG
GAAAGAGTAA AGCGAAGTGA AGAAGGTTAT CGAAGGATGG AATCTGAAGG CGAAGAGGAG GAGCAAACAC GCGTGCCGCT
GAGGGAGAGA CCGGAGTGGT CAGATGTTAC TCCTCTTCCG CAAAACGACG GCCCCAACCC CGTCGTTCCG ATCCAGTACA
CGCAAGACTT CACCGAAGTC ATGGACTACT TTCGCGCCGT TTACCACGCT GATGAACGCT CCCCTCGCGC CCTAGCTCTC
ACCGCGGAAG TTATCCAGTT CAACTCCGGC AATTACACTG TATGACTATC TAGCTACCCC TCTCTCGATA TTACAACCTA
AATCAATTCA AATCGCGCTT CAATTTTTTT CTGCTATAAA TCTTCATTAC TCACTCCTCA CCAATATGTG TGGTATTATA
ATATTTGAAG TTAATGTTAT TATCTTTTTT CGATTGAAGT GAGTTGTATG TGGTTTGTTT TGCAGGTGTG GCATTTCCGG
CGGTTGTTAC TTGAGTCGCT AAAAGTTGAC TTGTGCAGTG AACTGGAGTT TGTGGAGCGT ATGGCCGCTG GAAATTCCAA
AAATTATCAG ATGTGGTGAG ATGCTCTGCT CTGCTCTTGG TTGTTTGACT TCTCGCGAAC CTTATAAGGA TTTTGTTATT
AGTTAGGAAT CAAATAAATA TATATTTGTC TTTTCATTTA AGTAAATTTG GTCGTAGACT TTGTTTTAAT ACACTTCTTT
ATGAATGAGA AGAAAATAAG AGGTAGAACT TGCTAAAATC AACTTAGGCA TAGGTTGATT TTGGCTCACT CTATAAGCAC
TATAGTTTTT GGATAAGTTA AGGTAAATAA GAATGTTATT AAAGTTAGGG GTATAAGTTG ATTGTAGTTC ACACGAGTAG
CACAATTCAT TTTTACCTTC ATATTTTCTT TTCTATCAAA TGCTTATAAA GGAACAAAAT GCTTATAAAG AAGTTTATTT
AAAAAAAGGG TTTACAATGT GAAAATTTAT GAACTGTGGT GTCTCTGAAG CTGGTGCTTT GAAATTCTTC TTTGTCATGA
TGACAAGCCT TTTCAGTTGC ACAAAAGCAT TTTTACCATG ATTCTTCTGT ATGCTATGTT TGGTATTTGA CAGTCGTTTC
TTATGTAAAT CGTCGTGAAT TGAAGTGCTT ATAAATACAA CTTTTGTACA CACACCATCA TATTGATCTT CATGCCAGAT
GTTTTGTAGG CATCATAGAC GATGGGTTGC TGAGAAGTTA GGACCTGAAG CTAGAAAGGT TGAGCTTGAG TTCACCAAAA
AGATATTCTC AAATGACGCC AAACATTATC ATGCATGGTC GCATAGACAG GTTTGTTTGT CATATTGTCA CCACAAATCT
AAATGCTCTC AATTTTAGTA TTTGTATCTC TATCTGAGGC GTAGTTTAAT TATTGAAACC CTTCTTTTGT TGCGTGAACA
GTGGGTTCTT CAAGCACTTG GAGGATGGGA AGATGAGCTT AATTATTGCT CAGAACTTCT TGAAGAAGAC ATTTTTAATA
ATTCTGCTTG GAATCAGGTA TGCAACTATG TTACCTGTTA TGTTTAGTCT ATACAGGACA TCATAAATAC TCATCATGGA
TTTGCTTGAT TGTTGCCTAA CTAATTGATG TGAGACGCCT TCTCTCACAC GTCCCCCACC CTTAATCTTA CATTTCCAAT
AATTACAATT GAGAAGTAAC TATTTTCCTT GTATTTTGTT GAAGTTCCGT ATCAACTTTA ATTTTAGCTT ATGAGAGTCG
TTATTCTCTT ATAGGCTCTT TACGAACTAA AGGTCTCTAA TCGTAAATTG ATTTGAGGTT CAATATCTTC AATATAATTT
AGCCAGTAAG AATTCAGCGC AATACACAGG CATATTATAG AAATGGAAGA AATTAAATTA ATGGATAAAT GTTATTTCAA
TGATAATATC TAATAAACAT GGTTTTTTTT TTAAATTTCT AAATCTCTGA ACTATTCTAA TTAGTAAAAA GGTATTAGTG
ATGATTCAAA AACATATTGT TATATTTACT GTTAATTGAA GAAAATTTAG TGTTGATTAA TAGAGTTATT GAAAGTGAAA
ATCTTCTTTA TTTGAATAAC TAATGACACA TGTTACAATA AATACGTGGT TTTATCTGAA TAAAGATTTG CATGTAAGAT
GTAGCTTCGT AAGAAGAAAG AGTTACATAT GATGTGGTTT CCTTAGAAGA AAGAGTATGA TTTAACTTCG TGAGAAACAA
GAATGAGGTC TCAAATTGAA TATATGGGTG TGAATCAACT AAGTTCTGCT ATAAGAATTG TTAAAGGGGA AAGATGTGCC
ACATATTGTG CTTGACACCT TGTTGTCTTC TTACCCTACC TAATTAATTA ACTAGTAAGT AAAATCCTTG AGTAATATGA
TATGCTCAGG GGTAAAGTTA TTAATGTTCA TGACAAATGT ATTTTACTTT TAAAAAGTTT TCTTCTTTTT TTTCTTAATT
TAGAAAATTA ACATTTAATA AGTTTTGCAG AGATATTTTG TCATAACAAG GTCTCCTTTC TTGGGGGGGC TAAAAGCTAT
GAGAGAGTCT GAAGTGCTTT ATACCATTGA AGCCATTGTA TCCCAGCCTG AAAATGAAAG CTCGTGGAGA TATTTACGAG
GACTTTATAA AGGTGAAATC ACATCATGGG TAAATGATCC TCAAGTTTCT TCTGTGTGTT TAAAGATTTT AAGAACCAAA
AGCAACTACA TGTTTGCTCT TGGCACTGTT TTGGATCTCA TATGCTATGG CTATCAACCA AATGAAGACA TGAGAAATGC
CATTGAGGCT GTAAATGCAG TAGATATGGA TAAACACGGT TTAGAAGGTG ACGGGAGAGG GGAAAATCAA AATTTAAATA
TAGCACGAAA TATTTGTTCT ATCCTAGAAC ACGTTGATCC AATTAGAACC AACTATTGGA TTTGGCGCAA GAGTAGGCTT
CCTCTTTCGG CCTAGTACCA AAGTTTTTTT AGGACAACTA TGTCGTGTGT ACCAAAGCTC ATTGAAGTTA TGCCTGATTT
TTTGCGATGT 

>Vigan.07G040600.01
CCTCACTTTT GTCAAAGGTA AAAGAAAGGA ATCACATTCA CATGAAACGT CACACAGGCT TTTCATCGTA GAGAAACTCT
ATTGGGCCTA CAAAAGCAAG CCCATAAGCC CAAGGCTTAA AGCAAAAGTT AAGACCCCAG TCTAAATAGA GAGGGCGTGG
GAAAGAGTAA AGCGAAGTGA AGAAGGTTAT CGAAGGATGG AATCTGAAGG CGAAGAGGAG GAGCAAACAC GCGTGCCGCT
GAGGGAGAGA CCGGAGTGGT CAGATGTTAC TCCTCTTCCG CAAAACGACG GCCCCAACCC CGTCGTTCCG ATCCAGTACA
CGCAAGACTT CACCGAAGTC ATGGACTACT TTCGCGCCGT TTACCACGCT GATGAACGCT CCCCTCGCGC CCTAGCTCTC
ACCGCGGAAG TTATCCAGTT CAACTCCGGC AATTACACTG TGTGGCATTT CCGGCGGTTG TTACTTGAGT CGCTAAAAGT
TGACTTGTGC AGTGAACTGG AGTTTGTGGA GCGTATGGCC GCTGGAAATT CCAAAAATTA TCAGATGTGG CATCATAGAC
GATGGGTTGC TGAGAAGTTA GGACCTGAAG CTAGAAAGGT TGAGCTTGAG TTCACCAAAA AGATATTCTC AAATGACGCC
AAACATTATC ATGCATGGTC GCATAGACAG TGGGTTCTTC AAGCACTTGG AGGATGGGAA GATGAGCTTA ATTATTGCTC
AGAACTTCTT GAAGAAGACA TTTTTAATAA TTCTGCTTGG AATCAGAGAT ATTTTGTCAT AACAAGGTCT CCTTTCTTGG
GGGGGCTAAA AGCTATGAGA GAGTCTGAAG TGCTTTATAC CATTGAAGCC ATTGTATCCC AGCCTGAAAA TGAAAGCTCG
TGGAGATATT TACGAGGACT TTATAAAGGT GAAATCACAT CATGGGTAAA TGATCCTCAA GTTTCTTCTG TGTGTTTAAA
GATTTTAAGA ACCAAAAGCA ACTACATGTT TGCTCTTGGC ACTGTTTTGG ATCTCATATG CTATGGCTAT CAACCAAATG
AAGACATGAG AAATGCCATT GAGGCTGTAA ATGCAGTAGA TATGGATAAA CACGGTTTAG AAGGTGACGG GAGAGGGGAA
AATCAAAATT TAAATATAGC ACGAAATATT TGTTCTATCC TAGAACACGT TGATCCAATT AGAACCAACT ATTGGATTTG
GCGCAAGAGT AGGCTTCCTC TTTCGGCCTA GTACCAAAGT TTTTTTAGGA CAACTATGTC GTGTGTACCA AAGCTCATTG
AAGTTATGCC TGATTTTTTG CGATGT

>Vigan.07G040600.01
ATGGAATCTG AAGGCGAAGA GGAGGAGCAA ACACGCGTGC CGCTGAGGGA GAGACCGGAG TGGTCAGATG TTACTCCTCT
TCCGCAAAAC GACGGCCCCA ACCCCGTCGT TCCGATCCAG TACACGCAAG ACTTCACCGA AGTCATGGAC TACTTTCGCG
CCGTTTACCA CGCTGATGAA CGCTCCCCTC GCGCCCTAGC TCTCACCGCG GAAGTTATCC AGTTCAACTC CGGCAATTAC
ACTGTGTGGC ATTTCCGGCG GTTGTTACTT GAGTCGCTAA AAGTTGACTT GTGCAGTGAA CTGGAGTTTG TGGAGCGTAT
GGCCGCTGGA AATTCCAAAA ATTATCAGAT GTGGCATCAT AGACGATGGG TTGCTGAGAA GTTAGGACCT GAAGCTAGAA
AGGTTGAGCT TGAGTTCACC AAAAAGATAT TCTCAAATGA CGCCAAACAT TATCATGCAT GGTCGCATAG ACAGTGGGTT
CTTCAAGCAC TTGGAGGATG GGAAGATGAG CTTAATTATT GCTCAGAACT TCTTGAAGAA GACATTTTTA ATAATTCTGC
TTGGAATCAG AGATATTTTG TCATAACAAG GTCTCCTTTC TTGGGGGGGC TAAAAGCTAT GAGAGAGTCT GAAGTGCTTT
ATACCATTGA AGCCATTGTA TCCCAGCCTG AAAATGAAAG CTCGTGGAGA TATTTACGAG GACTTTATAA AGGTGAAATC
ACATCATGGG TAAATGATCC TCAAGTTTCT TCTGTGTGTT TAAAGATTTT AAGAACCAAA AGCAACTACA TGTTTGCTCT
TGGCACTGTT TTGGATCTCA TATGCTATGG CTATCAACCA AATGAAGACA TGAGAAATGC CATTGAGGCT GTAAATGCAG
TAGATATGGA TAAACACGGT TTAGAAGGTG ACGGGAGAGG GGAAAATCAA AATTTAAATA TAGCACGAAA TATTTGTTCT
ATCCTAGAAC ACGTTGATCC AATTAGAACC AACTATTGGA TTTGGCGCAA GAGTAGGCTT CCTCTTTCGG CCTAG

>Vigan.07G040600.01
MESEGEEEEQ TRVPLRERPE WSDVTPLPQN DGPNPVVPIQ YTQDFTEVMD YFRAVYHADE RSPRALALTA EVIQFNSGNY
TVWHFRRLLL ESLKVDLCSE LEFVERMAAG NSKNYQMWHH RRWVAEKLGP EARKVELEFT KKIFSNDAKH YHAWSHRQWV
LQALGGWEDE LNYCSELLEE DIFNNSAWNQ RYFVITRSPF LGGLKAMRES EVLYTIEAIV SQPENESSWR YLRGLYKGEI
TSWVNDPQVS SVCLKILRTK SNYMFALGTV LDLICYGYQP NEDMRNAIEA VNAVDMDKHG LEGDGRGENQ NLNIARNICS
ILEHVDPIRT NYWIWRKSRL PLSA*