GBrowse Details

Vigan.07G018300.01

Basic Information:
Name: Vigan.07G018300.01
Multiple alignment
Variant Information
Position: Chr07:1233443..1237443 (- strand)
Length: 4001
Functional Information:
Description: Similar to DNA repair protein XRCC1-like. [XP_004486715.1, Cicer arietinum]
InterPro: BRCT domain (IPR001357)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:36.76,36.64,7.06,6.97,8.70,7.34,2.58,5.69
Arabidopsis thaliana homolog: AT1G80420.1
Automatic updates:
Name: NM_001255016 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100818448 (LOC100818448), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1233443..1233660 (- strand)
Length: 218
Type: three_prime_UTR
Position: Chr07:1233661..1234002 (- strand)
Length: 342
Type: CDS
Position: Chr07:1234694..1234780 (- strand)
Length: 87
Type: CDS
Position: Chr07:1234972..1235082 (- strand)
Length: 111
Type: CDS
Position: Chr07:1235184..1235269 (- strand)
Length: 86
Type: CDS
Position: Chr07:1235918..1236029 (- strand)
Length: 112
Type: CDS
Position: Chr07:1236666..1236854 (- strand)
Length: 189
Type: CDS
Position: Chr07:1236933..1237301 (- strand)
Length: 369
Type: CDS
Position: Chr07:1237302..1237443 (- strand)
Length: 142
Type: five_prime_UTR

>Vigan.07G018300.01 class=Sequence position=Chr07:1233443..1237443 (- strand)
ACGCAACAAA AACGCAGTAC CAAAAGTGGG AGGAGGAGGA AGCGAAGAGT ATTATTATTA TTATTTTTTT TGTTCATTCA
TTTGTCTCCC AATATTTTTT ATTTATTCAT CTCAATAGGC ACGCACATTC AAATTCTCTT GCATGTTTCT GTTCACCGAT
GAAGTTTCTG ATCAATTTAC GAATTTTATT CTGACCCCAA ACGCAGGCTT CTTCACTAAA ACTTCGGTGT TTTTCGAATT
TGGTGTTTTT GGTACACTAC GCATAGGTAG TTCTTCTACT ATGTCTGGTG CTAAAAGAAG TGCCAACGAC AGCGGTTCCA
AGCGGAGCCT ACCGTCGTGG ACATGTTCAA AGAAGAACGA GAGCGAAAAC AGTGAGAAGA AACTAACTTT CGACGGCAAA
GGTGAGAAAT CCAATGAGGG TGAGGCACCC AAGATGGGCA AAGTTCAAAA TGAGAGTGGT GGAAAATCTT CTGCCTCAAG
TTTGGAGTTT AGAAGCTTCA ATAAACTTCT GGTGAGCTTT GGCTTTCCTT GCATTGCTAT TTTCGAATGT TTATTGACTG
AATCATTAAT TTAACCGGTT TTTGGACAGG AAGGGGTGGT TTTTGTGCTC TCAGGGTTTG TGAATCCGGA GAGGGGCATG
TTGAGGTCAC GAGCAATGGA AATGGGGGCA CAATATCAGC CTGATTGGAA CTCTGATTGC ACTCTCTTGG TTTGTGCATT
TCCAAATACC CCTAAGTTTA GACAAGTTGA AGCTGATTGT GGAACCATTG TATCCAAGGT TTTCTTTTTT TCCCTTTTCC
TTGTTTTGTT TCAATTCTAT GCTTTTCTTG GTGCCATTTT TATGCCTTCA TTTATAAAAG AGTTAAGATA TCTGGTGTTG
ATTCATGCTT ATTGATAAAC TCATAATTTA AAATAAACTG TTATTTAATG ACCAAGAGAA CGCAAGAGCA TCTTATGTTC
AAAGTCATTT TTCTTTGTTC GTGAAGTAAC TTTATTTCTA AGCCTTTTTT TGATCGTTTA GGTCCACATT TATTTCAGTG
TCAATTTCTG TAATTCCGTT AATTTGTGGT GTTGTTAGAC TCCATTACAG TGTTTGAAGA TTGTAGGCAA CTTTTCCGTG
ATTTGTATGA AGCAATTTTC TATGTAATGT GCTAGTTGAA ACATTTTGTT TGCAAGAGGT TTTCTATTGC TAAATCAAAT
CTATGTCTTT TCTTTTTCAT TATTTTGTCA GCATTACTTT ACTTAAGTGT TAAATATAAG GGATATCAAA CTTTAACACA
TTTTAATTTT GGTTGGGAAA TTATTGTCAT GCCACTCAAA CTCTTAGTTG TATAATCTTT GTATGTATTT TTGGACGATA
GTCTTACCTG ATATTACATG ATGCACCCTT TCTTTTCTTC GTTTTTGGGA TTAGGATTGG ATAATAGATT GTTACACACA
GAGGAAGCTG ATTGAGATTG ACAATTACCT TCTTCATGCT GGGAAACCAT GGCGTAAAGG AAATGTTTCA GGAGAAGTCA
ATGAAGGTGA TATAATTGGC TATGTGATTG TATATAGTAT AGAACGTTAA GTTAGAGGGC ATCTTTTTTT AACTATTTAC
TGACACTGCA CTAGTTGCAA CAAGCATCTT GTTTATATCT TTACTCTTTT TCTAGGAAAG TGAATCGAAA AATAAAATTA
TATATTTTGA AACAAAATTG CAATTTCAAG AGTCATTGTG ATCATCTATT GAGGATTTAA ATGATATTAT ATGTCTAATT
ATTTCTGAAA ATACTCAACA GTTAAAACAC TTCTTTTGGT TTTTCTAAAG CCGTTTTTAC ATCCATCTTA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATACA CACACACACT
ACTTAAATGG ATGCTACAAT GAAATGATGA AGCTTTGAAA ATAATGGCCT GTGTTACAAC ATGTCTTTAT GAGGTAGTTC
TTGTCAACCT CCTTCCCCTG CCCTAATACT GCTATCTCCA TCCAATTTCA CATCTATTTT ATCTTTATGT GAACCCCACT
ATGGGTGAGT ACAGATAAAA TACCATCTGT ACCCAAAAAG TCACCGAAGC ATGTTGATGG AGAACAGCCT TCAAAGTCAA
CAGCCTCCGT AAAATCAAAG GTAAATCTAA CAAGATGTTT TATAAGTCAC ATACTTGAGA GTCTGAATAA CCTTCATTTC
ATCTGCAAAC AATTAAATAT GCTAGTTTGG TGGTATTCCA GGGAAAAGGC ACTGATATTT CTAGGAAATG CTTTGAGCCT
TCGGAAGTGA AGGAGTGGGC CATTGATGAC TTGAATAAAA CAATTCAGTG GCTGGAAAGT CAAGAAGAAA AGGTTATGGT
CATCATTTTC TGTGTGTTTT CAGTTTTTGT TTCCTTCTAG AGGTTACAAA ATTCTTATTT AGATTCTGAA CTTGCATGGA
ATCAGACTAT AGTGCTAAAA TAGAAGTTTG CATTGAAAAT AAACTCATTT GTTAGAAAAT CATTGTATTT CACTACCCTC
TTAAATTATG TTAATCATTT CAGCCAGATC CAAATGAGGT GACGAAAATA GCTGCAGAGG GAATTCTAAC TTGTTTGCAA
GATGCAATTC GTTCTATAGA GGAAAAACAG GTAATGTACA CAGAATTTTG CATCACTCTC CAGTTAGAAA GCATAGTAAG
CCTCCCCCCT TCATAGAGAT ATGGTACCAT AAGCATAAAG AAAAGAGTTA CCTTATTATT TAAAATTCAA TCGATTTCCT
GTAAGGATGC ACTTTTCACA TGCATACAAG GCTAGGATCA CTGCTATTTG AGTATTAATT GTGTTTTTGT CCATCTTAGG
AGGTACGAAG TTAGCTAACT GGGAAACATT ACCATAAAAT GTCAATTTTT TCTTGCATTA ACACCCGTAG TACTTAGTAT
TTTCTATTTC CTACTTGTTT CCGATCCAAC ATGTTCTTAG GTGCTTCTAA GTTTCTCTGC AACTTTTTTT CTTGTTTTTA
TGGTAGTGAT AATACCTAAC GTCGCTGACT AATTTCATTT AGATAGGAAT TGGCTGATCA ATTGATTGAA TCAGCTCACT
GAATGACACA TTTCCGTATC AAAGCCACTA ACGGTTTGAT CTTAGAATAT TGTGTTTTGT TTCTAGTTTA ATGCTTTAAT
TTTATACCTT GCGATTATAT TTGACTTCAC ACCGTTCCCT GAATCCTGTT CCATAATCAC TACTCTTACT TTTAGTTTCA
CTGCAGTGCT TTTATAGTTG GGATGAAATC AAAATAAAAG ATTTCACAGC TGATGGTGAT TGCCTTACTA TCTTTAACCA
GGATATCCGA AAAGGAACTG AGGACTGGAT GTTCTTGCCT CGTGTAGTTG ACGAGCTTGC AAAGTTGGAT GTAGTTGGAA
ACAAAAAGAC TTTATTGTCA AAGGAAGATC TTCACAGAGA GGCTTTGGAT TGTAAGCGAA TTTACGAGGA GGAACTAAGT
AGTTTAGATC ATCAAAGGAA GAAAAATTCA AAGGTAAATA AAGAACAGAC GAGCAAAACT GGAAGAACAA ATGCCATGTC
TTCTGATGCA GTTGAATATG ATAGTGATGA TACAATTGAG ATGACAGAAC AAGAAATAGA CCTTGCATAT AAAACTTTGT
CCTCTAACAT CGGCCACTTG TGAATTCTGA ATGAACTTGT TTCTTTTGGG GAGAAAGGAA GTTGATTTGG TTTAGCTAGA
TTTTTCTTTG AATATTTTAC TGTGTATGTC ACAAAGTCTT TGTTATTGTC AGCCTTAGAT GTTCACCTGT TTTTGCTACT
TCCATGCATA TTACTTTTCT CAGTTCCCAT TTTTGTTCTA ATATCGGAGT TGGGTAAATC AAAACACAAC TTTACTTGGA
A

>Vigan.07G018300.01
ACGCAACAAA AACGCAGTAC CAAAAGTGGG AGGAGGAGGA AGCGAAGAGT ATTATTATTA TTATTTTTTT TGTTCATTCA
TTTGTCTCCC AATATTTTTT ATTTATTCAT CTCAATAGGC ACGCACATTC AAATTCTCTT GCATGTTTCT GTTCACCGAT
GAAGTTTCTG ATCAATTTAC GAATTTTATT CTGACCCCAA ACGCAGGCTT CTTCACTAAA ACTTCGGTGT TTTTCGAATT
TGGTGTTTTT GGTACACTAC GCATAGGTAG TTCTTCTACT ATGTCTGGTG CTAAAAGAAG TGCCAACGAC AGCGGTTCCA
AGCGGAGCCT ACCGTCGTGG ACATGTTCAA AGAAGAACGA GAGCGAAAAC AGTGAGAAGA AACTAACTTT CGACGGCAAA
GGTGAGAAAT CCAATGAGGG TGAGGCACCC AAGATGGGCA AAGTTCAAAA TGAGAGTGGT GGAAAATCTT CTGCCTCAAG
TTTGGAGTTT AGAAGCTTCA ATAAACTTCT GGAAGGGGTG GTTTTTGTGC TCTCAGGGTT TGTGAATCCG GAGAGGGGCA
TGTTGAGGTC ACGAGCAATG GAAATGGGGG CACAATATCA GCCTGATTGG AACTCTGATT GCACTCTCTT GGTTTGTGCA
TTTCCAAATA CCCCTAAGTT TAGACAAGTT GAAGCTGATT GTGGAACCAT TGTATCCAAG GATTGGATAA TAGATTGTTA
CACACAGAGG AAGCTGATTG AGATTGACAA TTACCTTCTT CATGCTGGGA AACCATGGCG TAAAGGAAAT GTTTCAGGAG
AAGTCAATGA AGATAAAATA CCATCTGTAC CCAAAAAGTC ACCGAAGCAT GTTGATGGAG AACAGCCTTC AAAGTCAACA
GCCTCCGTAA AATCAAAGGG AAAAGGCACT GATATTTCTA GGAAATGCTT TGAGCCTTCG GAAGTGAAGG AGTGGGCCAT
TGATGACTTG AATAAAACAA TTCAGTGGCT GGAAAGTCAA GAAGAAAAGC CAGATCCAAA TGAGGTGACG AAAATAGCTG
CAGAGGGAAT TCTAACTTGT TTGCAAGATG CAATTCGTTC TATAGAGGAA AAACAGGATA TCCGAAAAGG AACTGAGGAC
TGGATGTTCT TGCCTCGTGT AGTTGACGAG CTTGCAAAGT TGGATGTAGT TGGAAACAAA AAGACTTTAT TGTCAAAGGA
AGATCTTCAC AGAGAGGCTT TGGATTGTAA GCGAATTTAC GAGGAGGAAC TAAGTAGTTT AGATCATCAA AGGAAGAAAA
ATTCAAAGGT AAATAAAGAA CAGACGAGCA AAACTGGAAG AACAAATGCC ATGTCTTCTG ATGCAGTTGA ATATGATAGT
GATGATACAA TTGAGATGAC AGAACAAGAA ATAGACCTTG CATATAAAAC TTTGTCCTCT AACATCGGCC ACTTGTGAAT
TCTGAATGAA CTTGTTTCTT TTGGGGAGAA AGGAAGTTGA TTTGGTTTAG CTAGATTTTT CTTTGAATAT TTTACTGTGT
ATGTCACAAA GTCTTTGTTA TTGTCAGCCT TAGATGTTCA CCTGTTTTTG CTACTTCCAT GCATATTACT TTTCTCAGTT
CCCATTTTTG TTCTAATATC GGAGTTGGGT AAATCAAAAC ACAACTTTAC TTGGAA

>Vigan.07G018300.01
ATGTTTCTGT TCACCGATGA AGTTTCTGAT CAATTTACGA ATTTTATTCT GACCCCAAAC GCAGGCTTCT TCACTAAAAC
TTCGGTGTTT TTCGAATTTG GTGTTTTTGG TACACTACGC ATAGGTAGTT CTTCTACTAT GTCTGGTGCT AAAAGAAGTG
CCAACGACAG CGGTTCCAAG CGGAGCCTAC CGTCGTGGAC ATGTTCAAAG AAGAACGAGA GCGAAAACAG TGAGAAGAAA
CTAACTTTCG ACGGCAAAGG TGAGAAATCC AATGAGGGTG AGGCACCCAA GATGGGCAAA GTTCAAAATG AGAGTGGTGG
AAAATCTTCT GCCTCAAGTT TGGAGTTTAG AAGCTTCAAT AAACTTCTGG AAGGGGTGGT TTTTGTGCTC TCAGGGTTTG
TGAATCCGGA GAGGGGCATG TTGAGGTCAC GAGCAATGGA AATGGGGGCA CAATATCAGC CTGATTGGAA CTCTGATTGC
ACTCTCTTGG TTTGTGCATT TCCAAATACC CCTAAGTTTA GACAAGTTGA AGCTGATTGT GGAACCATTG TATCCAAGGA
TTGGATAATA GATTGTTACA CACAGAGGAA GCTGATTGAG ATTGACAATT ACCTTCTTCA TGCTGGGAAA CCATGGCGTA
AAGGAAATGT TTCAGGAGAA GTCAATGAAG ATAAAATACC ATCTGTACCC AAAAAGTCAC CGAAGCATGT TGATGGAGAA
CAGCCTTCAA AGTCAACAGC CTCCGTAAAA TCAAAGGGAA AAGGCACTGA TATTTCTAGG AAATGCTTTG AGCCTTCGGA
AGTGAAGGAG TGGGCCATTG ATGACTTGAA TAAAACAATT CAGTGGCTGG AAAGTCAAGA AGAAAAGCCA GATCCAAATG
AGGTGACGAA AATAGCTGCA GAGGGAATTC TAACTTGTTT GCAAGATGCA ATTCGTTCTA TAGAGGAAAA ACAGGATATC
CGAAAAGGAA CTGAGGACTG GATGTTCTTG CCTCGTGTAG TTGACGAGCT TGCAAAGTTG GATGTAGTTG GAAACAAAAA
GACTTTATTG TCAAAGGAAG ATCTTCACAG AGAGGCTTTG GATTGTAAGC GAATTTACGA GGAGGAACTA AGTAGTTTAG
ATCATCAAAG GAAGAAAAAT TCAAAGGTAA ATAAAGAACA GACGAGCAAA ACTGGAAGAA CAAATGCCAT GTCTTCTGAT
GCAGTTGAAT ATGATAGTGA TGATACAATT GAGATGACAG AACAAGAAAT AGACCTTGCA TATAAAACTT TGTCCTCTAA
CATCGGCCAC TTGTGA

>Vigan.07G018300.01
MFLFTDEVSD QFTNFILTPN AGFFTKTSVF FEFGVFGTLR IGSSSTMSGA KRSANDSGSK RSLPSWTCSK KNESENSEKK
LTFDGKGEKS NEGEAPKMGK VQNESGGKSS ASSLEFRSFN KLLEGVVFVL SGFVNPERGM LRSRAMEMGA QYQPDWNSDC
TLLVCAFPNT PKFRQVEADC GTIVSKDWII DCYTQRKLIE IDNYLLHAGK PWRKGNVSGE VNEDKIPSVP KKSPKHVDGE
QPSKSTASVK SKGKGTDISR KCFEPSEVKE WAIDDLNKTI QWLESQEEKP DPNEVTKIAA EGILTCLQDA IRSIEEKQDI
RKGTEDWMFL PRVVDELAKL DVVGNKKTLL SKEDLHREAL DCKRIYEEEL SSLDHQRKKN SKVNKEQTSK TGRTNAMSSD
AVEYDSDDTI EMTEQEIDLA YKTLSSNIGH L*