GBrowse Details

Vigan.07G018000.01

Basic Information:
Name: Vigan.07G018000.01
Multiple alignment
Variant Information
Position: Chr07:1192873..1195736 (- strand)
Length: 2864
Functional Information:
Description: Similar to Auxin-induced protein 22C. [O24541, Vigna radiata var. radiata]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: AUX/IAA protein (IPR003311)
Aux/IAA-ARF-dimerisation (IPR011525)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.04,5.92,47.19,8.66,0.42,7.65,4.03,69.58
Automatic updates:
Name: NM_001376198 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata auxin-induced protein 22C (AUX22C), mRNA.
PubMed ID: 26177103 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:1192873..1193135 (- strand)
Length: 263
Type: three_prime_UTR
Position: Chr07:1193136..1193250 (- strand)
Length: 115
Type: CDS
Position: Chr07:1194356..1194449 (- strand)
Length: 94
Type: CDS
Position: Chr07:1195111..1195465 (- strand)
Length: 355
Type: CDS
Position: Chr07:1195466..1195736 (- strand)
Length: 271
Type: five_prime_UTR

>Vigan.07G018000.01 class=Sequence position=Chr07:1192873..1195736 (- strand)
TCCCAGTAAG CAGATCAGAC GGACAGGATG AAATGGAAGG AAATGAGAAG TGGTATAATA TGTCTCCATG CCTTGTCCAC
CTTATGCTGC TTCTCTGTAA TGGTTTTTGC GGGGGAACAT TTCGTCCCCA CATTTGTTTC TCATCTCACC GACCACCTCC
TACTTCACCC TCTCATGCTT CAACTCCTTT TTATATATAT ATACACACAC TTGACAACCT CTTTTCTTCA TACACTACCC
TTTTCTTTCG TTAATTACTT TGCCTTTTTC AATGGAGAAA GAAGATCTTG GCCTTGAAAT CACCGAGCTC CGGTTGGGCC
TTCCCGGCGC CGCTGCGGAG AACAACACCG ACAAGGACAA GAATAAGAAC AAAAAGAGGG TCTTCTCCGA CATTGAAGGT
GAAAACAGCT CCTCTGAAGA TGGCAAAAAA GAAACCAAGA ATCAAGTTGT CGGGTGGCCT CCGGTTTGCT CCTACCGCAA
GAAGAACACC GTCAATGAAC CTAAACTCTA CGTTAAAGTC AGCATGGACG GCGCTCCTTT CTTGCGTAAA ATCGATTTAG
CCATGCACAA GGGATACTCC GACTTGGCCT TCGCCTTGGA CAAGTTCTTC GGTTGCTACG GAATCGGTAA GTCAGTCACC
TTTTTCTTTC TCATACCCAG AAATATTGCT TTTCGTAAGT TGTCTAGACA TGGTTAAGGT TTATGAAAGA AACATGCAAT
TTAAGATTCT CTTATGTGTG TATGTATAAC CACCAATGTT AAAGCAATAT AGGGTTAAGA CAGAATGTCA GAAGAAGATT
AGAAGGGTTT TGAACTCAAA GAAGTGAAGG TTTAAGAACT TCATTAGAAA ATCTACAAAT AGAGATGCCA ATCGATCCAT
GTTAATATTA ATTTGAAGCC ACGTGAATGG ATATAGGGAA ATTAATATAA GTTTTATCCT TCGATGTTAT TTTCCAAAAC
TTCTTAGAGT TTGTTAATTT TAAAATCGAA TTCTATTAAA TATTTTAGAA GGGAGACAAA GAGGGACAAA TTGGAAGTGA
TCACTATGTA GAATAGTTAG ACATTCTCCT AAATTAATAT GTATTCTGAA AGACTCTATA GATGACAGAG AATCAAGCCT
GATAGCTCGA TTTATTAATC TGTATGCTTG AAAATTCTTA ATCAAATAAC ATCATCATCA GTTCCAAATA TTTATATATT
CGCTACTGCG TTGTAATTTA AAATTTAAAA AATATATATA TATATATTAT ATATGGAGAA GATTTTGATT ATAAATATTG
TTGACAGGCG AAGCGTTGAA GGATGCGGAA AATGCTGAAC ACGTTCCCAT ATACGAGGAC AAAGATGGCG ACTGGATGCT
GGTTGGAGAT GTTCCTTGGG AGTAAGTCCT TTTTGGCCCC CCTTCTATAT AATTTATTAA GTCCTTTTAT TCCTTACACA
AAATTACTTT AACATATCAA TAACTTCAAA TTCATGATCT GATTTTGTTC CTCAACTCTT CCCACACAAA AATGAACTTA
ATAAAACTGT TAGATTGATG TAAAGATTTG AAATTTCCGT TCTAAAAATA TGAATCTGCG TTTGTTTTAA TTTGGGTGGG
AGCATCAATT CATGTTTCAA GAGACAGAAC GTGTTGAAAA CGAGTCAAGT AAACCACAAG TACTTGTGCG TGTCTTCCAC
TGTGTCCGTG TTAGCTCAGC AAAAGCCATA CCAAACACTC AATGCCTGCA TTGCATAGAC CACCAACTTT GATTTCGTTA
ATTTCGCTAC TTTATTAATT ATCTCTATTA ACGATGACTG TTACCTGCTA ATTACGATTA TGTAATGCAT TACTTTCTAA
TCTAATCATG GGTCAAATAA ACAATTAGTC CCACCAAATT TAAAGGGTAG TCGAATTGGT CAGTGATTTG ATCGCAGAAC
AAGTTTGGGA GAATAATTTT GTAGTCCCCC AACACAGCAC TTGATTAGAC ATGTGCCGAT TATGTTGTCG ATTGACCTAA
TTAATTAATT AGTTCTACTT AATCTGTATG CTAAGTATCA TTATCCGAAA CAATTACAAA AAATGATCTT GGATCATATA
TTGCCGACAT GCGTGAATCC CTCATTATGA TAATGTTGGG CACATCAACA TGGGAAGGGT GGGGGATACA CACTAATTAA
AGTTGTAGCC TCACCAAAAA AAAGGCAAAC CTTTAGTGGT GGATACATTT CCCCATGATC ATAAAATGTT CCAGAAAAAA
GTAAAAATAA AAAAATTATA ATCTTTTTTT TTTTAAATTT CTGGGTTTTA AAATTTGTGC AAGTATGCAT ATATATATAT
ATATATATAT ATATATATAT ATATTATATA TATATTATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATATATATAT ATAAAGGTGT TGATATAGAA AGTGGGAGTT
TTGCAGGATG TTTAGGGAGT CATGCAAGAG ATTGAGGATT ATGAAGAGAT CAGATGCAAA GGGGTTCGAT CTGCAGCCAA
AAGGGTCTTT AAAGGGATTC ATAGAAGGCG TGAGAAAATG AAAAGCATAG ATAAAGAAGC AAAGAAGATA GGCTTCTAAT
TGATATGTCG TACACGTTTT GAAGACAAAA CAAGTTTCAT ATGTTGTCGT TTTATTATAT TTGAGGAAGC AACATTTTAT
AGTATGGTGC ATGAACCAGA CTTGTGTCTA TGATAAGGCC TAAGAATGCT GTTTAATGAA ATAGGGATTC AAAAACTCAT
CGTTTTAGTA TATGTCTTGT CATATTTGTT AATATTTTGC AAATTACACC AAACTTATTG TCCA

>Vigan.07G018000.01
TCCCAGTAAG CAGATCAGAC GGACAGGATG AAATGGAAGG AAATGAGAAG TGGTATAATA TGTCTCCATG CCTTGTCCAC
CTTATGCTGC TTCTCTGTAA TGGTTTTTGC GGGGGAACAT TTCGTCCCCA CATTTGTTTC TCATCTCACC GACCACCTCC
TACTTCACCC TCTCATGCTT CAACTCCTTT TTATATATAT ATACACACAC TTGACAACCT CTTTTCTTCA TACACTACCC
TTTTCTTTCG TTAATTACTT TGCCTTTTTC AATGGAGAAA GAAGATCTTG GCCTTGAAAT CACCGAGCTC CGGTTGGGCC
TTCCCGGCGC CGCTGCGGAG AACAACACCG ACAAGGACAA GAATAAGAAC AAAAAGAGGG TCTTCTCCGA CATTGAAGGT
GAAAACAGCT CCTCTGAAGA TGGCAAAAAA GAAACCAAGA ATCAAGTTGT CGGGTGGCCT CCGGTTTGCT CCTACCGCAA
GAAGAACACC GTCAATGAAC CTAAACTCTA CGTTAAAGTC AGCATGGACG GCGCTCCTTT CTTGCGTAAA ATCGATTTAG
CCATGCACAA GGGATACTCC GACTTGGCCT TCGCCTTGGA CAAGTTCTTC GGTTGCTACG GAATCGGCGA AGCGTTGAAG
GATGCGGAAA ATGCTGAACA CGTTCCCATA TACGAGGACA AAGATGGCGA CTGGATGCTG GTTGGAGATG TTCCTTGGGA
GATGTTTAGG GAGTCATGCA AGAGATTGAG GATTATGAAG AGATCAGATG CAAAGGGGTT CGATCTGCAG CCAAAAGGGT
CTTTAAAGGG ATTCATAGAA GGCGTGAGAA AATGAAAAGC ATAGATAAAG AAGCAAAGAA GATAGGCTTC TAATTGATAT
GTCGTACACG TTTTGAAGAC AAAACAAGTT TCATATGTTG TCGTTTTATT ATATTTGAGG AAGCAACATT TTATAGTATG
GTGCATGAAC CAGACTTGTG TCTATGATAA GGCCTAAGAA TGCTGTTTAA TGAAATAGGG ATTCAAAAAC TCATCGTTTT
AGTATATGTC TTGTCATATT TGTTAATATT TTGCAAATTA CACCAAACTT ATTGTCCA

>Vigan.07G018000.01
ATGGAGAAAG AAGATCTTGG CCTTGAAATC ACCGAGCTCC GGTTGGGCCT TCCCGGCGCC GCTGCGGAGA ACAACACCGA
CAAGGACAAG AATAAGAACA AAAAGAGGGT CTTCTCCGAC ATTGAAGGTG AAAACAGCTC CTCTGAAGAT GGCAAAAAAG
AAACCAAGAA TCAAGTTGTC GGGTGGCCTC CGGTTTGCTC CTACCGCAAG AAGAACACCG TCAATGAACC TAAACTCTAC
GTTAAAGTCA GCATGGACGG CGCTCCTTTC TTGCGTAAAA TCGATTTAGC CATGCACAAG GGATACTCCG ACTTGGCCTT
CGCCTTGGAC AAGTTCTTCG GTTGCTACGG AATCGGCGAA GCGTTGAAGG ATGCGGAAAA TGCTGAACAC GTTCCCATAT
ACGAGGACAA AGATGGCGAC TGGATGCTGG TTGGAGATGT TCCTTGGGAG ATGTTTAGGG AGTCATGCAA GAGATTGAGG
ATTATGAAGA GATCAGATGC AAAGGGGTTC GATCTGCAGC CAAAAGGGTC TTTAAAGGGA TTCATAGAAG GCGTGAGAAA
ATGA

>Vigan.07G018000.01
MEKEDLGLEI TELRLGLPGA AAENNTDKDK NKNKKRVFSD IEGENSSSED GKKETKNQVV GWPPVCSYRK KNTVNEPKLY
VKVSMDGAPF LRKIDLAMHK GYSDLAFALD KFFGCYGIGE ALKDAENAEH VPIYEDKDGD WMLVGDVPWE MFRESCKRLR
IMKRSDAKGF DLQPKGSLKG FIEGVRK*