GBrowse Details

Vigan.07G016400.01

Basic Information:
Name: Vigan.07G016400.01
Multiple alignment
Variant Information
Position: Chr07:1088900..1091474 (+ strand)
Length: 2575
Functional Information:
Description: Similar to Uncharacterized protein. [I1M5Q3, Glycine max]
InterPro: NPH3 domain (IPR027356)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.00,4.67,1.68,4.10,8.88,0.32,0.74
Automatic updates:
Name: NM_001317528 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max root phototropism protein 3-like (LOC100777820), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:1088900..1089201 (+ strand)
Length: 302
Type: five_prime_UTR
Position: Chr07:1089202..1089903 (+ strand)
Length: 702
Type: CDS
Position: Chr07:1090764..1091300 (+ strand)
Length: 537
Type: CDS
Position: Chr07:1091301..1091474 (+ strand)
Length: 174
Type: three_prime_UTR

>Vigan.07G016400.01 class=Sequence position=Chr07:1088900..1091474 (+ strand)
CTCTCTGCCA ATTGCCAACT GCAATGCACA ATACCAACGC ACGCTTTCTT ACATACATAC TCTGATGTAA ATGTGGCCAT
ATAAAGTAAC CAAGTATGCT CCAAATTTTG TTTTTTATGT CCTTCCTTTG CCCATGTAAA TGGAACAAGT CCAGATCCTA
CACGCAATAC ACAGGATACA CACAAAACAA ACTAGTCCTT TTCGAGTTTG ATGCCGTGTT GTAATTACTT TTGTTGTGTA
TTATAAGCAA GACACTGTGT GGCATAGAAT GGCAAAGCTG CAGTGTTGTG TGAGCAGTGC AAATGAAGAA GCAGTGTTGT
GAAGAATCAG AGGCAACTGT TGGATCCTGG GAATGTTGGT TCGATGATGC ATGCATCGTT GACATGGATT ACTTTGTGAA
GACCCTTTCA AGCATCAAAC AGAAGGGTAT TCGTGCAGAC TTGATTGGTT CCATCATCAC TCATTATGCT TCCATTTGGC
TCCCTGATCT CTCTGCCTCT TCTGAGAATG GTGTCACCAC TCAATTCCAA TCCCCCGAAA GCGTCACGAG TTCATGGATG
AAGAAGAGAT TCTTTGTGGA GACCTTGGTG AATGTTCTGC CTCCTGAGAA GGATTCTGTC CCATGCAACT TCCTCCTTCG
CCTTCTCAGA ACCGCCAACA TGGTTCGGGT TGATGCCACT TACAGAGCTG AGATTGAGGA CCGCATTTCC TCGCAGCTAG
ATCAAGCTTC TCTCAAAGAG CTCATGATAC CCTCCTTCAG CCACACGTGT GGAACTCTCT TAGATGTTGA GCTTGTCCTC
AGGTTGGTTA AGAGGTTTAT GAGTATGGAC CGTGACGGTG CTGCTTTGGT TAAGGTTGCC AAGCTGGTTG ATTGCTACCT
CGCTGAGGCT GCTGTGGACG CCAATCTGTC CTTGTCTGAG TTCCATGCAC TTGCTGGAGT TCTTCCCAAC CACGCAAGAG
CCACGGATGA TGGGTTGTAC CGAGCCATTG ACACTTACCT TAAAGTATGT CTTCTCATTT TAGTTTCAAA TTATTTGATG
GTCAAAACAC AGTTCTATGT GCTTCTGGCA ATGTTCCCTT GTTAGAATTG GAGTTTCACC TCAGTCATCC ATGTATTAAA
AGCTTGGATT AGACTTCAAT ATGAAATGAC AAGGTGAAAC TCCAATTTGA ATTGGAAAAC AACAGAAAAA CACATGGAAT
AGTCTATAAG TTTTGTTGCT TCTTTCATTC ATTAGAGGTG ATTCTTTTTT GTTATTCGTG TCTCTTAATT TACACAATGA
TGACAAGGAG GAAGGAGAAA AATGATTCTT CTGTTGTCAC TGGCATGAGA TTATCTTTCG AGTGGGAATA GGTGAAGTGA
AACTGAAATA ACATAAATGT CTGTCTTGTG GGGCCACTAG ATCATAACTG ATAATTTTTT TTCAACATTT GGCTTTTCTC
TTGTGCCACA CACTGATACA TATAAATGCT TTACTGAAAT GGAACGTGAC TAATGCTCTC TTGAGAACAT GAAACTTTTT
CTAGTTTAGA TGTTAAAAGC TTGGCATTTC CTTCTGGTTG TTCTGTGTAT GTATTACTTG CCATAAGGTG CACCAGTCTC
TTAAATTTAG GTAACATGTC ACGTACAAGT AGGACAATGT ACTTGCCATA AGGTGCACTA GTCTTCCCAC ATGTTATTTG
AATAATACAA ACTTGTCCTA TTTGTGCTTA GAACTTCATT TTACCATTAA AAAAAATGCA GATACCCTTT TCGCCACTTT
AGACAGTACT GGATTGGGAC ATGCATGTTA CTAGTTATTG TTTCTTGTAC TATTTGTGGT GAGAGTGTGA TTTTGAAACT
CTGAACTCTG GTTATGTGTG GTAGGCACAT CCAGGTGTGT TAAAGCAAGA AAGGAAGGGT CTGTGCAGAC TGCTTGATAG
CCGGAAACTG ACACCAGAGG CCTCACTTCA TACAGCTCAA AATGAAAGGT TGCCTGTGAG AGCTGTGATT CAGGTGCTGT
TCTCTGAACA AGCCAAACTC AACCGGCAAG TAGATTGGAG TGGTTCCTTC AGCTTGAGGA GCCCAAATGA CCCACCTGGA
AGGTGCCTTT CAAAGCGAGA AATGAATGCT CAGCAACTGG AGATAACGAA GCTGAAGGAA GATGTTTACA GGCTGCAAAA
CCAGCTGAAT GCCATGAAAG TGCAGATGGA GAGGTTGGCT GTGAAGAAGA AGGGCTTATT CAAATGGAAG AGGCTTGGAA
TGCCTACATT TGGTAGAAAC GTGGGAGGGG TGGAGAGAAT TGAAGAAGAG GAGGAGGAAG CTGAAAGAGA AAGTAGGTTT
GGAAGGCAAA CGTCAATGGA CATGAAAACC AGTTTGGTGA AAAGTAGGAC TCCCCACAAG TGGAGGAAAT CTATGTCCTG
AGACATTGGC TTTGAACAAA AATATATGAT TCATGTAGTC TCTGTTAATT TGTTATAGTA TACAAGTTCG TTTTTTTGTG
TTGGACCTGA GAAATAATGT GAGATATAAC TCTGGTATTT GGAATAAAAT TCAATTAGAT GGTATATAGC AAAGTTCTTT
ATGTAGTAAT GACTG

>Vigan.07G016400.01
CTCTCTGCCA ATTGCCAACT GCAATGCACA ATACCAACGC ACGCTTTCTT ACATACATAC TCTGATGTAA ATGTGGCCAT
ATAAAGTAAC CAAGTATGCT CCAAATTTTG TTTTTTATGT CCTTCCTTTG CCCATGTAAA TGGAACAAGT CCAGATCCTA
CACGCAATAC ACAGGATACA CACAAAACAA ACTAGTCCTT TTCGAGTTTG ATGCCGTGTT GTAATTACTT TTGTTGTGTA
TTATAAGCAA GACACTGTGT GGCATAGAAT GGCAAAGCTG CAGTGTTGTG TGAGCAGTGC AAATGAAGAA GCAGTGTTGT
GAAGAATCAG AGGCAACTGT TGGATCCTGG GAATGTTGGT TCGATGATGC ATGCATCGTT GACATGGATT ACTTTGTGAA
GACCCTTTCA AGCATCAAAC AGAAGGGTAT TCGTGCAGAC TTGATTGGTT CCATCATCAC TCATTATGCT TCCATTTGGC
TCCCTGATCT CTCTGCCTCT TCTGAGAATG GTGTCACCAC TCAATTCCAA TCCCCCGAAA GCGTCACGAG TTCATGGATG
AAGAAGAGAT TCTTTGTGGA GACCTTGGTG AATGTTCTGC CTCCTGAGAA GGATTCTGTC CCATGCAACT TCCTCCTTCG
CCTTCTCAGA ACCGCCAACA TGGTTCGGGT TGATGCCACT TACAGAGCTG AGATTGAGGA CCGCATTTCC TCGCAGCTAG
ATCAAGCTTC TCTCAAAGAG CTCATGATAC CCTCCTTCAG CCACACGTGT GGAACTCTCT TAGATGTTGA GCTTGTCCTC
AGGTTGGTTA AGAGGTTTAT GAGTATGGAC CGTGACGGTG CTGCTTTGGT TAAGGTTGCC AAGCTGGTTG ATTGCTACCT
CGCTGAGGCT GCTGTGGACG CCAATCTGTC CTTGTCTGAG TTCCATGCAC TTGCTGGAGT TCTTCCCAAC CACGCAAGAG
CCACGGATGA TGGGTTGTAC CGAGCCATTG ACACTTACCT TAAAGCACAT CCAGGTGTGT TAAAGCAAGA AAGGAAGGGT
CTGTGCAGAC TGCTTGATAG CCGGAAACTG ACACCAGAGG CCTCACTTCA TACAGCTCAA AATGAAAGGT TGCCTGTGAG
AGCTGTGATT CAGGTGCTGT TCTCTGAACA AGCCAAACTC AACCGGCAAG TAGATTGGAG TGGTTCCTTC AGCTTGAGGA
GCCCAAATGA CCCACCTGGA AGGTGCCTTT CAAAGCGAGA AATGAATGCT CAGCAACTGG AGATAACGAA GCTGAAGGAA
GATGTTTACA GGCTGCAAAA CCAGCTGAAT GCCATGAAAG TGCAGATGGA GAGGTTGGCT GTGAAGAAGA AGGGCTTATT
CAAATGGAAG AGGCTTGGAA TGCCTACATT TGGTAGAAAC GTGGGAGGGG TGGAGAGAAT TGAAGAAGAG GAGGAGGAAG
CTGAAAGAGA AAGTAGGTTT GGAAGGCAAA CGTCAATGGA CATGAAAACC AGTTTGGTGA AAAGTAGGAC TCCCCACAAG
TGGAGGAAAT CTATGTCCTG AGACATTGGC TTTGAACAAA AATATATGAT TCATGTAGTC TCTGTTAATT TGTTATAGTA
TACAAGTTCG TTTTTTTGTG TTGGACCTGA GAAATAATGT GAGATATAAC TCTGGTATTT GGAATAAAAT TCAATTAGAT
GGTATATAGC AAAGTTCTTT ATGTAGTAAT GACTG

>Vigan.07G016400.01
ATGAAGAAGC AGTGTTGTGA AGAATCAGAG GCAACTGTTG GATCCTGGGA ATGTTGGTTC GATGATGCAT GCATCGTTGA
CATGGATTAC TTTGTGAAGA CCCTTTCAAG CATCAAACAG AAGGGTATTC GTGCAGACTT GATTGGTTCC ATCATCACTC
ATTATGCTTC CATTTGGCTC CCTGATCTCT CTGCCTCTTC TGAGAATGGT GTCACCACTC AATTCCAATC CCCCGAAAGC
GTCACGAGTT CATGGATGAA GAAGAGATTC TTTGTGGAGA CCTTGGTGAA TGTTCTGCCT CCTGAGAAGG ATTCTGTCCC
ATGCAACTTC CTCCTTCGCC TTCTCAGAAC CGCCAACATG GTTCGGGTTG ATGCCACTTA CAGAGCTGAG ATTGAGGACC
GCATTTCCTC GCAGCTAGAT CAAGCTTCTC TCAAAGAGCT CATGATACCC TCCTTCAGCC ACACGTGTGG AACTCTCTTA
GATGTTGAGC TTGTCCTCAG GTTGGTTAAG AGGTTTATGA GTATGGACCG TGACGGTGCT GCTTTGGTTA AGGTTGCCAA
GCTGGTTGAT TGCTACCTCG CTGAGGCTGC TGTGGACGCC AATCTGTCCT TGTCTGAGTT CCATGCACTT GCTGGAGTTC
TTCCCAACCA CGCAAGAGCC ACGGATGATG GGTTGTACCG AGCCATTGAC ACTTACCTTA AAGCACATCC AGGTGTGTTA
AAGCAAGAAA GGAAGGGTCT GTGCAGACTG CTTGATAGCC GGAAACTGAC ACCAGAGGCC TCACTTCATA CAGCTCAAAA
TGAAAGGTTG CCTGTGAGAG CTGTGATTCA GGTGCTGTTC TCTGAACAAG CCAAACTCAA CCGGCAAGTA GATTGGAGTG
GTTCCTTCAG CTTGAGGAGC CCAAATGACC CACCTGGAAG GTGCCTTTCA AAGCGAGAAA TGAATGCTCA GCAACTGGAG
ATAACGAAGC TGAAGGAAGA TGTTTACAGG CTGCAAAACC AGCTGAATGC CATGAAAGTG CAGATGGAGA GGTTGGCTGT
GAAGAAGAAG GGCTTATTCA AATGGAAGAG GCTTGGAATG CCTACATTTG GTAGAAACGT GGGAGGGGTG GAGAGAATTG
AAGAAGAGGA GGAGGAAGCT GAAAGAGAAA GTAGGTTTGG AAGGCAAACG TCAATGGACA TGAAAACCAG TTTGGTGAAA
AGTAGGACTC CCCACAAGTG GAGGAAATCT ATGTCCTGA

>Vigan.07G016400.01
MKKQCCEESE ATVGSWECWF DDACIVDMDY FVKTLSSIKQ KGIRADLIGS IITHYASIWL PDLSASSENG VTTQFQSPES
VTSSWMKKRF FVETLVNVLP PEKDSVPCNF LLRLLRTANM VRVDATYRAE IEDRISSQLD QASLKELMIP SFSHTCGTLL
DVELVLRLVK RFMSMDRDGA ALVKVAKLVD CYLAEAAVDA NLSLSEFHAL AGVLPNHARA TDDGLYRAID TYLKAHPGVL
KQERKGLCRL LDSRKLTPEA SLHTAQNERL PVRAVIQVLF SEQAKLNRQV DWSGSFSLRS PNDPPGRCLS KREMNAQQLE
ITKLKEDVYR LQNQLNAMKV QMERLAVKKK GLFKWKRLGM PTFGRNVGGV ERIEEEEEEA ERESRFGRQT SMDMKTSLVK
SRTPHKWRKS MS*