GBrowse Details

Vigan.06G266100.01

Basic Information:
Name: Vigan.06G266100.01
Multiple alignment
Variant Information
Position: Chr06:38473216..38478518 (+ strand)
Length: 5303
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5Q4, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.09,0.85,7.37,0.03,0.13,0.00,5.30,1.11
Arabidopsis thaliana homolog: AT1G71692.1
Structure :
Position: Chr06:38473216..38473532 (+ strand)
Length: 317
Type: five_prime_UTR
Position: Chr06:38473533..38473714 (+ strand)
Length: 182
Type: CDS
Position: Chr06:38473842..38473923 (+ strand)
Length: 82
Type: CDS
Position: Chr06:38475360..38475421 (+ strand)
Length: 62
Type: CDS
Position: Chr06:38476096..38476195 (+ strand)
Length: 100
Type: CDS
Position: Chr06:38476296..38476337 (+ strand)
Length: 42
Type: CDS
Position: Chr06:38477979..38478020 (+ strand)
Length: 42
Type: CDS
Position: Chr06:38478128..38478223 (+ strand)
Length: 96
Type: CDS
Position: Chr06:38478224..38478518 (+ strand)
Length: 295
Type: three_prime_UTR

>Vigan.06G266100.01 class=Sequence position=Chr06:38473216..38478518 (+ strand)
TTTACTTAGA ATAAATTACT TGTCCTTAAC ATATTATAAA ACTCTAACCG GTGCAGATTC CATAGGTACG TGGAAGGCGA
AATGTTATAA TATGCGGTGG TTTGTCATAT AAGATGTTGA ATCCCAGAAA TTGAAAGCAA AATTAGGAGA GAAACTCGGA
GAAAGGTACT ACGTACCTGC TGCAGCAACC TCGAAGCTAG TTCAAACTAG TGGAAGGTTG TGTGCATAGA AGCGCACAAA
ACAAAACCAA ATTGTACTGA GAAAAAGACA GAAAGAAAAA CATCAAACGA TAGATCTGAG GAAGAAGAAT AATCAAGATG
GCTCGTGGAA AGGTTCAGCT TAAGAGAATT GAGAACTCAG TGCACAGACA AGTGACCTTC TGCAAGCGTC GAGCTGGGCT
TCTTAAGAAG GCTAAGGAGC TCTCTGTGCT GTGCGATGCT GAAATTGGTC TTTTCATTTT CTCCGCCCAT GGAAAGCTCT
ATGAACTAGC CACCAAAGGG TCTTTTTCTT TCTCTCTTTT CCACCCTAAA ACTCTTGCTT TCTCTCTTCA CATATCTGTA
TTAATATTAT CTCCCTGTTT CCATTTTGAT CTTTTCTATA CCTTCGTCTG CATGAATATA TCATAGAACC ATGCAAGGCC
TGATCGAGAG GTACACGAAG TTCACGCGAG GGGCTCAACC TGAAGCACCA CCCGAAACAC TTCCTCTTGT AAGTACATAT
TTCTATTTTT CAAGAAATAA ATAAATAAAA CATAAAGAAT GAATAATATG AAATAAATGT AAAAATTTTA TGTGTAAAAT
TTTATTTTTT TTCATTTTTA TTTTCTTTTC ATCAACTTTA AAGTTTAAAA ATTCAAATAA GAGTTAAAGT CTTAGAAATT
AGGAAATAAA TTATTTGGTT GAGAATTTTA AACGATTTTG GATAGAGAAT GATGTTAATC TTTAACGTAA ACTGTAAAAT
AATTTGATCA ATGATAAGAA TGAAACCTTA AATATGCTCT GTCATTGTAA TATGCAAAGG AATCACGTAA TGTTTTGTTC
TCTGTCCACT TAATTTTGTC GCATACATGG TTAGATTAGA TTCTTCAAGT ATTTGCTAGC TAAAAAATTG TGTTAGAATG
GTATAAGTGT CATACACCAC ATTGAACTTA ATTTAATTCT GCCTTATAAA TAATTAATCA CTATGCTTAA GGTTAAAGTA
AGCATAAGCC CATTCACAAT TATTGCTTTT TAATTATTTG AGTAAGTTAT AGCCCTTCTC TGTTTTCTTA TATTTGCTTT
TTACTCCTTT TTATATTTGT AATTTGTAAA TAAATATCCT TTTAATTATT TTAATTTAAA GCAAACATAT AAATATTTTT
TTAGCTTACA ATACTTTAAA AATGAATTAT TTAATTATGA AAATTGTGTA CACAAAAGAA AAACATTTTC TTAACACCAA
ATTTTGAAAT TATTAATAAA AGATGAAAAA TAAAAATTTA TACTTAAATA AGTTAAGTGT TCAAATAATT AAACGAGATA
ATGATTAGTG ATCACAAATA AATTCATCTC TAAACGTATT TATTAATAAG TCTTAATTTT GACATAAAAA CTTCGCATTA
ACTAAGTATA CATACTAATT TTTCAAATTG GATATAAAGA TAAGATGTCT TATTCCCATA TTTCTATTAT TACTTGTTTT
CGTCTTTGTA CTCATTTACA TTTTAATTTA ACATTTTTAG TTTATGAAAT AATTTAAACA ACTTGTTTAA AATAAATTCA
TGTTAAATGT CATTATGTAT ATTGAAATCC CATCTAGACT AACTAGATAA ATGAGATTAT CATATTAATA TAAAATTATA
TGTTAAAGTT AACTTTTTTT TATATTTTAT TTAAATGATA AAATTTCTAC ACTGATCCAT TTTTATTTTA AATTAGTTTG
ATTGAAATGT AAAAGACAGA GATTTCGGTA GAATAAATAC AACTCAAGAA AATATAAGTA AGGACATTGA AATTGAGGTA
TATATGTTGT ATGTATGTGC AACTTTACAT TAATTGTGTA TCTATTTTAT ATTGTCATTA TTAATCATAA ACAGTTTATA
GTTTTTTTTT TACCATTATA TATTTTAATT GAAAGTCATA CTCAGTGGCA AAATTGTTGA CTAGGATGCA AAAGAGGAAT
CTTACTTGCT AAAACAAGAA ATCCAAACAC TGCAAAAGAG TATCAGGTAC ACTATTATTT TATTTTATTA TATTATTTAT
CTTCCAACAA AGTACTACAC TATTATGTAC ACAATGTAAT TAAGGAAATT AGAATTTTTT TTACTGTGTA AGTTTCTTTT
GGAGAGGATG AGTTTGAGTG TTTCTTCTTG TATCTTCTCA AATTTCTTTC TGTACTTTCA TATTTTTTTA AATCTTAAAA
TTATTTTCTG TATTTCAAAA AAATTTATAT TTCACTTTTT GTTTTCAATA GATTTTGAAA TTTATTGAAG AATTTTTCAA
ACCTTCAACA AATTTTAAAA CCCTTTTAGG AAGGTTATTT TTGGAATGTG AAAATATAGA GAAAAACTTT TTGAGCCTAA
TAAGCATTTT TAAATGGTGG TTGTTGCTTT TTACACCCCA TCAAAGGATA ATGATACTTT GACAACATTT TTTTGATAAT
ATTTTAACAC TATCTACGTG TCATTTTATG ATTGGTCAAT GTTAGTGTTT ATGATTATTA TTATTGATTG TTCAGTAATT
TTTGACCAAT CACAAAATGA CACGTAGATA ATGTTAAAAT GTTGTCAAAA AAATGTTGTC AAATTATCAT TATCCCCAAT
CAAAATAACA TCATACTATA GTCTAAAGTG AAAAGGTTGA CACTTATACT CATATAAGTT TGCTTATAAA AAATTGTTAG
GTATTTGTTT GGAGGTGGAA ACAAGACCTC AACAATCGAT GAACTACAAG TGTTGGAGAA GAATATGGAA ACTTGGATAT
ATCATATTCG CTCAATGAAG GTACTATAAA ATATTTTCTT ATATGATTAA AATATTTATA AATTCTCATT TATATTATAC
ATGGATGATT AATTTGTATG CCATATGTGA TGAACAACAG ACCAACATCA TGTTACAAGA AATTGAAGCA TTGAAAGATA
AGGTTAGCAT AAATTTATGG TTCAATTTTT ATATTTCTAA ATATTTTACT TGTCATAATT GTATCCTTGC TATTATAAAT
TGCCTTATAT AAATACAAAA GTTATATATA TATATATATA TATATATATA TATATATATA TATATATATC ATGTAAGGAA
ATTAAAATAT AGAAAAAAAG AAGTATATAC TAAACTATAG CTTTTCATTG GGAATACACT TAACAAATTT TATTACAAAC
GATTTGCAAT CATAAATATT TAGCATTGTT AATAAGATTT TTGTGTGAAA AAAAAGAGCA TAATACAAAA TAGTATATAT
TTTTTATATA TACTTTGCAT TAACATTCAA TTAAATAAAA ATGATTTATT CGTTGTATGA AATTTTATTT CGATCTAACT
TTTCAATTTG CATTAACATT CGATTGTAGT TGAATTTTCC TATTTTAACC GGACCAAGTT ATAAATATGT AAGATAATTA
AATTATAGTA TTACAGTGTT AAAACAGTTT AAATTAAAAT ATTAAATAAA CGGGTCATTT AAATTATACA CACTTAATCA
TTACCCTTTT ACTTTTAAAT AAAAGTTTAC TCACAAACTA AATTTGGAAT ATACTATTAG AGAAATTAAG GGAAATTAAA
AAAATACATA ATAAAGACAA AATATAGGTA TCTACAAGAA CAAAAGAGAA TGAATTCAAA TTGATACGAT AATTGAAAGT
AAGGTATATA CTTTTATAGA GTGCAAATAA ATCCAACCAA ACGGGAGATT TGAATTTTAA ACTTGACTTG TAAAAAGGTG
AATCCTTTAA GTTTGATTTA AACGAATCTA ATAAAAAACT TAACTTTGAC TTGTTAATTT CTTTTAAGAT AATATTGTTT
AACTTAATTA CTTTATTTTT ATAAAAAGAA TCGTAAATAT TTTCAAGTTT ACCATCTTAG TGTTTAATAA ACTTTAAGAT
TACGTGGTAA TTCACAAATA GAAGATTATA CAAAAATGTT TTCATATAAA TAATAAGAAA TATACACTTT TTTCTTCTTG
TATAATTCTC TTAGTGAATT GTTTATTGTC CAATTTGCAA AGCTTTGACC TTGGTTTATT CCAATAGTTA AGCTTAATAT
TAAGGTTGGA TTTGCTTTAG TTAAACAAAT AACCCTAATC AAACATTTAC AAAAATTGAG TATATAATTA ATTTATAAAT
ATTAAAAAAT AGATTTTAAA CTTAATTTAA CTTTACAATT ATTTATAAAA TAAAATTAAT ATAAATATGG TAAGATATTG
TTGGTTCTAA GTTATTATAT TTTTACGGAT TTGTTTTTGG TATTATTGAA AAAGAAAATT ATCTATGAAA ATATCTTATG
TATATAAACG TATTTTTATT TTTTATTTTA TCTTATTTTT ATTTTTTATT TTATCTTATG TGAAATTTTT GTACAAAATT
TACCTATTAT ACCATATTTA TGCCAACAAA CCTCATACAT AAACTAACGT TTTTTACTGA TTTATTTGAA AACCAAAGCA
AAAATTGATC TATGAAGCCT TAAATAGGAG GAAGTTCCAT CTTTGTTAGA ATGTTCTGTT TTTCTTTTTA ACATTTTTAT
ATTATATATA AAAAAATCAA CATTTTACCT TTGTGGATTG TAGGAGGGAA CACTTAAAGC GGCAAATAAA TATCTCCATG
ATAAGGTAAT ACTTTATTTC TATTTATTAA GTACACGTTT TTCCTAAAAA CATGTAATAA TATGTCATAC TTTGTCCCAA
AAATCATTCT AATGTATGGT TACGTTTTAC AGATTGTGGA GAATGCTGCA ATTCATAACT TTGCTCAATT TCCCACGGAT
GTTCCGTACC CACTAATTAT ACAAGATGGA ACTTTTCAAC TCTATTAATA TGTTGTTTCT ATAATGTTTT GGTTATAGGC
TTTATTAATA AAGGGAAAAA TTATGGAGGC TGTGTTGTGT TACACAACAT TAAAAGTAAA GTATGAACAT TGTACTTGTG
CTACAAACTA CGCAATAATT TGTAACATTA ATATTGTCTT ACTCTAATAA GTTTATAATT TATAATGTAA AGTCAGAAAA
GTGTGAGTTC TGACTAGTAG TATCTTTTCT CTGTCATTGA CAATAATGTA AAATAGTTGA CGAGAGTAAC AATGATATTG
TATGTAATAA TTTTGTATGT TGT

>Vigan.06G266100.01
TTTACTTAGA ATAAATTACT TGTCCTTAAC ATATTATAAA ACTCTAACCG GTGCAGATTC CATAGGTACG TGGAAGGCGA
AATGTTATAA TATGCGGTGG TTTGTCATAT AAGATGTTGA ATCCCAGAAA TTGAAAGCAA AATTAGGAGA GAAACTCGGA
GAAAGGTACT ACGTACCTGC TGCAGCAACC TCGAAGCTAG TTCAAACTAG TGGAAGGTTG TGTGCATAGA AGCGCACAAA
ACAAAACCAA ATTGTACTGA GAAAAAGACA GAAAGAAAAA CATCAAACGA TAGATCTGAG GAAGAAGAAT AATCAAGATG
GCTCGTGGAA AGGTTCAGCT TAAGAGAATT GAGAACTCAG TGCACAGACA AGTGACCTTC TGCAAGCGTC GAGCTGGGCT
TCTTAAGAAG GCTAAGGAGC TCTCTGTGCT GTGCGATGCT GAAATTGGTC TTTTCATTTT CTCCGCCCAT GGAAAGCTCT
ATGAACTAGC CACCAAAGGA ACCATGCAAG GCCTGATCGA GAGGTACACG AAGTTCACGC GAGGGGCTCA ACCTGAAGCA
CCACCCGAAA CACTTCCTCT TGATGCAAAA GAGGAATCTT ACTTGCTAAA ACAAGAAATC CAAACACTGC AAAAGAGTAT
CAGGTATTTG TTTGGAGGTG GAAACAAGAC CTCAACAATC GATGAACTAC AAGTGTTGGA GAAGAATATG GAAACTTGGA
TATATCATAT TCGCTCAATG AAGACCAACA TCATGTTACA AGAAATTGAA GCATTGAAAG ATAAGGAGGG AACACTTAAA
GCGGCAAATA AATATCTCCA TGATAAGATT GTGGAGAATG CTGCAATTCA TAACTTTGCT CAATTTCCCA CGGATGTTCC
GTACCCACTA ATTATACAAG ATGGAACTTT TCAACTCTAT TAATATGTTG TTTCTATAAT GTTTTGGTTA TAGGCTTTAT
TAATAAAGGG AAAAATTATG GAGGCTGTGT TGTGTTACAC AACATTAAAA GTAAAGTATG AACATTGTAC TTGTGCTACA
AACTACGCAA TAATTTGTAA CATTAATATT GTCTTACTCT AATAAGTTTA TAATTTATAA TGTAAAGTCA GAAAAGTGTG
AGTTCTGACT AGTAGTATCT TTTCTCTGTC ATTGACAATA ATGTAAAATA GTTGACGAGA GTAACAATGA TATTGTATGT
AATAATTTTG TATGTTGT

>Vigan.06G266100.01
ATGGCTCGTG GAAAGGTTCA GCTTAAGAGA ATTGAGAACT CAGTGCACAG ACAAGTGACC TTCTGCAAGC GTCGAGCTGG
GCTTCTTAAG AAGGCTAAGG AGCTCTCTGT GCTGTGCGAT GCTGAAATTG GTCTTTTCAT TTTCTCCGCC CATGGAAAGC
TCTATGAACT AGCCACCAAA GGAACCATGC AAGGCCTGAT CGAGAGGTAC ACGAAGTTCA CGCGAGGGGC TCAACCTGAA
GCACCACCCG AAACACTTCC TCTTGATGCA AAAGAGGAAT CTTACTTGCT AAAACAAGAA ATCCAAACAC TGCAAAAGAG
TATCAGGTAT TTGTTTGGAG GTGGAAACAA GACCTCAACA ATCGATGAAC TACAAGTGTT GGAGAAGAAT ATGGAAACTT
GGATATATCA TATTCGCTCA ATGAAGACCA ACATCATGTT ACAAGAAATT GAAGCATTGA AAGATAAGGA GGGAACACTT
AAAGCGGCAA ATAAATATCT CCATGATAAG ATTGTGGAGA ATGCTGCAAT TCATAACTTT GCTCAATTTC CCACGGATGT
TCCGTACCCA CTAATTATAC AAGATGGAAC TTTTCAACTC TATTAA

>Vigan.06G266100.01
MARGKVQLKR IENSVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK GTMQGLIERY TKFTRGAQPE
APPETLPLDA KEESYLLKQE IQTLQKSIRY LFGGGNKTST IDELQVLEKN METWIYHIRS MKTNIMLQEI EALKDKEGTL
KAANKYLHDK IVENAAIHNF AQFPTDVPYP LIIQDGTFQL Y*