GBrowse Details

Vigan.06G262400.01

Basic Information:
Name: Vigan.06G262400.01
Multiple alignment
Variant Information
Position: Chr06:38207506..38209939 (- strand)
Length: 2434
Functional Information:
Description: Similar to Uncharacterized protein. [I1L5M8, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site (IPR008193)
DNA-directed RNA polymerase, RBP11-like dimerisation domain (IPR009025)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.72,25.45,33.05,33.96,51.55,41.33,28.32,32.41
Arabidopsis thaliana homolog: AT3G52090.2
Automatic updates:
Name: NM_001253195 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DNA-directed RNA polymerase II subunit RPB11-like (LOC100784219), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:38207506..38207800 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr06:38207801..38207833 (- strand)
Length: 33
Type: CDS
Position: Chr06:38208446..38208541 (- strand)
Length: 96
Type: CDS
Position: Chr06:38209336..38209414 (- strand)
Length: 79
Type: CDS
Position: Chr06:38209525..38209614 (- strand)
Length: 90
Type: CDS
Position: Chr06:38209704..38209756 (- strand)
Length: 53
Type: CDS
Position: Chr06:38209757..38209939 (- strand)
Length: 183
Type: five_prime_UTR

>Vigan.06G262400.01 class=Sequence position=Chr06:38207506..38209939 (- strand)
TGGAGGAGCA ACGCCCGTTA GAATAACAAT AAGGGAGTGC GAGGTTTTGG GTTAATGTTT ATGGTTGAAG AGAACATGTT
GGGCCTGGCC CGTTTTAAAT GATGGTATTT GATTTGAAGA GTGGTGGAAG GAGGGAGGAA GAAGAATAGA CAGACATAGC
ATAGAGAGAA AAGAACTGAA GCTATGAATG CTCCAGATCG TTACGAGCGT TTCGTCGTAC CTGAAGGCAC CAAAAAGTAA
CTAATTCTTC TCTCAATCCT TTTCTTCCTC CTTTTATTTG CATTTCCTGA TTCTCATTTT TTTTTTCATA CAACGTTGAA
AATAGGGTCT CTTACGAGAG GGACACCAAG ATCATCAATG CCGCCTCCTT CACCATTGAG CGAGAGGAAC ACACCATCGG
CAACATCTTG CGCATGTATA AATACCTTTC CCTTTACTCT AAATTTTTAA TTTTAATTCA ATCACCGCGA AACCCTAACT
TTTCTTTGCT GCTGCTGTTT CTGTTTGCAA TGAATTGATA TTCAGGCAAC TCCACAGAGA CCCCAACGTG TTATTTGCTG
GATACAAGCT TCCCCACCCT CTTCAGTATA AAATCATTGT CAGGGTGAGA TAACGAGTTT CTTGTCATCA ATTGGCTTCA
ATTTTTTCAA TTTTCATGGA ATATTTTATT ATTATTATTA TTATTATTAT TTTTCTACTT TTCGAAAGTT TTTCAAGTAA
GAATTTAGTT GTAAGCTATT CTGATCAGAT GTAGTTTAGG GGTAAAGAAT AAGAAGACGC AAATTCTACT TTAGTTGGAA
ATCAGGATGC GTTCTATTGT TGTCCTGTTG TTAGAATTTG GATGTAAATG AACTGAACTG ATGGTGTGTA AACCTAAGAA
GAAGAGATAT GACACTGGGC ATAAATATGG TAGGATTCTG GTATGACTTG GAACAGGGAA ACATGGAATT TTTTAGTAAT
CATAATTCAC AGCATTTTGC TATGTACAAA GCTTAAAACT AAAATGAAAA TTTGAATTGG AGGAGAGAAT TTATATTTTA
AAATGAGCGT GACTTACTCT ACAGTTGATA AAATGTTAAA AATAAAATTT TATCTAATAG TCCAAAAGGT AAAAGCGGAA
AAATTATGAG CATGCAATTA AAAATTATCT AATTGTGTAT GCAGTGTTGG ACATAGATTT TTTACGATTT AACATGTTCA
CTATTTGGCA GTGCCTTTGC TTCATAGTTT TAGACCCATT TGGTTTCCAT CTGTCTCTAT TTTAGTATTT TGATATGCAG
GCGTTATAGT TTCTTTCTTA TTTTCCAGGA ACTGGGGAGT ACTTACCCAT TTCTTTTTGT TTTTTTATGG GAAATAATAG
TTATTTGAGC ATTATTTGTT ATGTTGTTTT TGTTGTAGAT ACATACTACA AGCCAGTCTT CGCCAATGCA GGCATATAAC
CAGTCTATTA ATGATCTGGA CAGGGAACTT GATCATCTGA AGAATGCCTT TGAGGTAAAA GCGTCTTTTT CTTATTCTTA
GTGCAGTATA TCGAAATTCT GACCTTTTTA TTCGGGATCT CTTTTAACTA TTGAATAGAC TATCGGCCAT TACGACCTCA
CCATTGTTTT GCATTGGTCT CATTTCAATT TTTTTACCTA ACCTAGAAAG TAGTTGTAGA TTTTCGAAGT TAGATTTGTA
TATCACTTTT GTGTCTCCGA TGCTTACTTG GATCTCTATG GTTAAATTGG ATATTGACTT ATGTTCAGTA TTTGTAACTC
ACTTTTGACA TTGTCTACAC CTCTACCCAT GGCAGCCACT CATTATATTT TTTTCTAGAG TCATTTTAGA AATATGTATG
TCTAATTAAG GACATCAATG CCACACGTGG GATTCAGACA TAGATTTTGC TTAATCTGGG AATGCAACCT CTTGAATGTC
AGATAATCAA TTACCAATGT CTCTTGATGG CTTTTATGGG GTGACCTAAT AGCTACTTCA AACATCATTA CTATCATTCT
AAACAGTACA TCTTAGAAAT GATTGTAGTA TGTATGGATC ATGTTCAGTA TTATTATTTG ATTTTTTGAT GGGCCGGTCG
TAACATGTTC AAAATTCTTA CTGCAGGCAG AGATGTTGAA GTTTTCAAGG GACTATTGAT TGGATGGTGT CACGTTACAT
GCCCTGGCAG ATATTTTTGA AATAGTGAAT CACTTCTGCC AAATGGAATT TAAATGGGAT TTGAGCATTT TGGGAGATTT
GTTAAATATG GTTCTGTTGA AGAAATTTTA ACATTTGTAA ACAGTTACTT TATGACGGCA ATTGTTAGTA AATAGTTGTA
TGTATGGATG ATATAAATTG CTGAGGACTT TTCGTGAGGA TTAATCAATC ATATTGGCTG AATTATTTTG GTTAAAATTA
TTCAGTAATC ATTAATCATA TATATTGTTT GGAG

>Vigan.06G262400.01
TGGAGGAGCA ACGCCCGTTA GAATAACAAT AAGGGAGTGC GAGGTTTTGG GTTAATGTTT ATGGTTGAAG AGAACATGTT
GGGCCTGGCC CGTTTTAAAT GATGGTATTT GATTTGAAGA GTGGTGGAAG GAGGGAGGAA GAAGAATAGA CAGACATAGC
ATAGAGAGAA AAGAACTGAA GCTATGAATG CTCCAGATCG TTACGAGCGT TTCGTCGTAC CTGAAGGCAC CAAAAAGGTC
TCTTACGAGA GGGACACCAA GATCATCAAT GCCGCCTCCT TCACCATTGA GCGAGAGGAA CACACCATCG GCAACATCTT
GCGCATGCAA CTCCACAGAG ACCCCAACGT GTTATTTGCT GGATACAAGC TTCCCCACCC TCTTCAGTAT AAAATCATTG
TCAGGATACA TACTACAAGC CAGTCTTCGC CAATGCAGGC ATATAACCAG TCTATTAATG ATCTGGACAG GGAACTTGAT
CATCTGAAGA ATGCCTTTGA GGCAGAGATG TTGAAGTTTT CAAGGGACTA TTGATTGGAT GGTGTCACGT TACATGCCCT
GGCAGATATT TTTGAAATAG TGAATCACTT CTGCCAAATG GAATTTAAAT GGGATTTGAG CATTTTGGGA GATTTGTTAA
ATATGGTTCT GTTGAAGAAA TTTTAACATT TGTAAACAGT TACTTTATGA CGGCAATTGT TAGTAAATAG TTGTATGTAT
GGATGATATA AATTGCTGAG GACTTTTCGT GAGGATTAAT CAATCATATT GGCTGAATTA TTTTGGTTAA AATTATTCAG
TAATCATTAA TCATATATAT TGTTTGGAG

>Vigan.06G262400.01
ATGAATGCTC CAGATCGTTA CGAGCGTTTC GTCGTACCTG AAGGCACCAA AAAGGTCTCT TACGAGAGGG ACACCAAGAT
CATCAATGCC GCCTCCTTCA CCATTGAGCG AGAGGAACAC ACCATCGGCA ACATCTTGCG CATGCAACTC CACAGAGACC
CCAACGTGTT ATTTGCTGGA TACAAGCTTC CCCACCCTCT TCAGTATAAA ATCATTGTCA GGATACATAC TACAAGCCAG
TCTTCGCCAA TGCAGGCATA TAACCAGTCT ATTAATGATC TGGACAGGGA ACTTGATCAT CTGAAGAATG CCTTTGAGGC
AGAGATGTTG AAGTTTTCAA GGGACTATTG A

>Vigan.06G262400.01
MNAPDRYERF VVPEGTKKVS YERDTKIINA ASFTIEREEH TIGNILRMQL HRDPNVLFAG YKLPHPLQYK IIVRIHTTSQ
SSPMQAYNQS INDLDRELDH LKNAFEAEML KFSRDY*