GBrowse Details

Vigan.06G254800.01

Basic Information:
Name: Vigan.06G254800.01
Multiple alignment
Variant Information
Position: Chr06:37728492..37732248 (+ strand)
Length: 3757
Functional Information:
Description: Similar to Gamma-tocopherol methyltransferase. [F8WRI3, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: methyltransferase activity (GO:0008168)
InterPro: Methyltransferase type 11 (IPR013216)
Tocopherol O-methyltransferase (IPR025774)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,12.01,15.28,4.32,4.34,5.30,14.87
Automatic updates:
Name: KM434769 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Bragg chloroplast gamma tocopherol methyltransferase 3 mRNA, complete cds; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Name: MK416205 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max tocopherol methyl transferase 3 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: MK988566 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar DS74 tocopherol methyl transferase 3 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001253954 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gamma-tocopherol methyltransferase (GAMMA-TMT), mRNA.
PubMed ID: 28811265 NCBI(pubmed)
22053941 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:37728492..37728569 (+ strand)
Length: 78
Type: five_prime_UTR
Position: Chr06:37728570..37728783 (+ strand)
Length: 214
Type: CDS
Position: Chr06:37729779..37729948 (+ strand)
Length: 170
Type: CDS
Position: Chr06:37730096..37730200 (+ strand)
Length: 105
Type: CDS
Position: Chr06:37730369..37730572 (+ strand)
Length: 204
Type: CDS
Position: Chr06:37730925..37731027 (+ strand)
Length: 103
Type: CDS
Position: Chr06:37731927..37732030 (+ strand)
Length: 104
Type: CDS
Position: Chr06:37732031..37732248 (+ strand)
Length: 218
Type: three_prime_UTR

>Vigan.06G254800.01 class=Sequence position=Chr06:37728492..37732248 (+ strand)
GACTTGACAG GTTCTGCATA TAAAAATGGC ATCGTATCAG TTTCTCACTC AATTTTCTTT TCTTCAACGA AGAAGGAGAT
GTCGGCAGTG GAACAGCATG AGAAGGAGAA GGAGAAACTG CAGAAGGGAA TCGCTGAGTT CTACGACGAG TCCTCCACCA
TATGGGAGAA CATTTGGGGC GACCACATGC ACCATGGCTT CTACGACCCG GATTCTACCG TTTCGGTTTC GGATCATCGT
GCTGCTCAGA TCCGAATGAT CGAAGAGTCG CTTCGTTTCG CCTCGCTTTC TGGTATTCTT CGTTTTTCGT AACAGTTCTA
GTTTCAACTT CAGTCTGTTC ATTCAAACAC TGTTAGATTC CAAATTCACA ACAAAATTTT ATGCAGATAG GTGAGATTAG
TTGCGTACAT CACATTCTTT GATCTGCTTT GATTCGAAAA CAAATTTTCT TCATGAAATT TTCTCGATGA TGCCTTCCTG
TCCTTCTTTA AAAGATGATG TCGTCTACTT TGCTGTTTGA CATGGTCTTT TTCACTGTGT CTCCCTTCCA CATGTTTCAC
GGGGTATTTT TTTTATCATT ATTTCGTACA CAGGATATTA ATTTTTAGTG TATTTGTATA TTTTATTTTA CATCTATATA
AAAAATGTCA TTTTTATCCC TTGGTTGAAA CCTCGCTTCA AAATTGAATC ATACTTACAA TTTACTTTTT AACCTTTTAT
TTATATCTAT TTATTTATTT TAATAATTAT ATTCGTTAGA TCATTAGTTC TTTCTTTACA TCATTCTATA AATTATTTAA
CTATAGTTGA TAAAAAAATC TCACTGTCTA TCTATCATTT TAATCTCGTC TTTTTCATTT CATTTATTTT ATAAAACAAA
ATGAGAGTCA CAATGACGGT GTGGTTAAAT GGTCCTAGAG TTTCTGAATA TCCACCAAAT TGATCCTTTT TGGTGTGATT
AAATGAACTT TCCAACTGTT GTGGAGACGA AAATAAAAAA GAAAACTAAA CAAAAATAAA CTTGTGTATG AATTGATATG
TACGATTTGT TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATCTT TTTCAAGAAT
TATATGTTTA GTTTGGTAAA AGTTAGTTTC TGTTTATAAA CAAATCCATT TTATTTTTTT CGTAATACGT TGATAATATG
TAACTAATAA TAATTGTGGT AATTTGGATC TTGATTTTAA GACATGAAAA TTTTGTATGT TACTGACTGT TATTCTGGGT
TGGTTAGAGG AGCCTACCAA ATGGCCGAAG AGAATAGTTG ATGTTGGATG TGGCATAGGG GGCAGTTCCA GATATTTGGC
CGAGAAATTT GGGGCAACCA GCGTTGGTAT CACTCTCAGT CCTGTTCAAG CTCAAAGAGC TAATGCTCTT GCTGCAGCTC
AAGGATTGGC TCACAAGGTC TTAATTTCTC AACATTGGTT TCTTTTGGAT CTACTTTTCG CATTTTTCAA AGTTCTTGAT
AACTTCTATG GAATCTACGC ACATGTAGCT ATTATAATAT AGTATAAAAG TAAAATATTT GTTTCCATGT TTCTGTGATT
GCAGGTTTCT TTTCAGGTTG CAGACGCTCT GCAGCAACCA TTCCCTGATG GACAGTTTGA TCTGGTGTGG TCCATGGAGA
GTGGAGAGCA TATGCCTGAC AAAACTAAGG TTTCAATTTA ATTTCTCTTC CACTATATGC TTTTTCTTGT GACTAAGCTT
ACTTCCAACG ATAGATTAAA CCTTAACCAT GATTGAATTA ATGTTTGATT TGTTCTGTAC GCTGTTTATC AAATATATAT
AAGTTTTCTG CTTCACATGC TACACATGCC ATGACAGTTT GTTGGAGAGT TGGCTCGGGT AGCAGCACCA GGTGGCACCA
TAATAATAGT AACATGGTGC CACAGGGATC TTGGCCCTGA CGAACAATCC CTAAAACCAT GGGAGCAAGA TCTGTTGAAG
AAGATTTGTG ATGCATTTTA TCTTCCAGCC TGGTGCTCAG CTGCTGATTA CATCAAATTG CTTAAATCAC TGTCACTTCA
GGTACTCAAT AACATCTAAT TAAGTGTTTT ACTGTTCTTG AGGTTTTCAA TATTTTGAAT GCCTGTTCTC TATTCATTCC
AAGTTATAGG AGATATATAC ATATGATTAA TTGTATATAC ATATGGTATA CGGTGAAACA TATTCTCATT CATTTGATAT
ATATTAAACA AATAAAACAA TTATAAAAAA AATCTATATT TATAAAAGAA ATAAAAAAGT AATGAAAAAT AGTGACAAAT
GAATGGAAAA AAATTGTATG TATCAAAATA TTATTATTCT GAATATATTG ATAGAGAAAT TGTGTTGCTA CTAATGTATA
AGATGCATGG TTGGTATATA TATATGTATG TAGGATATCA AGTCAGCAGA TTGGTCTCCC TTTGTTGCTC CATTTTGGCC
AGCAGTGATA CGTTCTGCGT TAACATGGAA TGGCCTCACT TCACTTTTGC GCAGTGGTAA GCTCAACATT AATTTATGGA
TAATTTTCAA TAGTTAATGG TTTTCCTAAA TTTTCTGTAA AAAAGTATGA ACAAAAAGCT CTTTATAAGT TAAATAGTTA
TGACAAAATA ATTCTTCAAG AAGTTTATAT AGTAAAGCTT GTATAAAGTA AATTATGGGT TGATAAATTT CAGTTTATAT
AAATGTTTGT TATTTATTTA TGATTCTTAA TGAATATTTG TGCATACGAT TTTCAAAAGT TGAATATTTA ATGATTTAGT
TTGCTTGTTA ATAGATCAAA ATATATGCCA CTGGCTGCGT GAGGTTTACC AGAAAATTAT TTTATTTTAG AATAACGAAG
ACTAAATTAT TCGAAGAAAA TTAATTGTGA AAGGAGATTG TCAGTAATGA ATTAGTTGGT TAGTGTTTGG ATATGCATTA
TACATATAAT ATATATTTAT AGAAATTGTT TTATCGGTTG AAATTATTTA TTTTCAGAAA AAATAAAAAC ATAAAAGTTT
AATTTTATAA TAGTTAATTT AACGTATAAA AGATTATTTT ATTGCTAATC TTTTATTTTC TCAAGTTATA GTTGTGTTTA
TGCCAATCAA AGAAATTAGA ACATATTTTG AAAAAATAAA GCATACAAAT TTAGTGTGAA TGTATGAGTA CGATTAAAAG
GCTTTTGATT TTACATGAAA ACATAGAGAG CATGCATGTA TTTTGAAAGA TGTATATCCG CAAGAAAAAG GAAAGGATGC
AATCAGAAGA AGTTATTTTA CAGTTGAAAT TAGAGAAACA ATAATTAATT AATTTTTAAA TACAATTATG CAGGAAAAGG
AAAGATTACT TATTCCACCA ACTTCCACAT CTACCTGTTC TTGTTGAAGT GATTATTATA TATTTTTTTT TGCAGGAGTG
AAAACCATTA AAGGAGCTTT GGCTATGCCA TTGATGATAA AAGGATACAA GAAGGGTTTG ATTAAGTTTG TGATCATTAC
ATGTAGAAAG CCTGAATAAA TAAGTTAAAT ATTATATTTA TTGTTTTGAC ATAATTTATT TTAATAGTTG AAAAAAAATA
TATAAGAGAA GCCTATTGAG AGTGAAAGGG GTGAAATGAC ATCAAATGGA AGATATATGA AAATTCGATT CAGCTTCCGC
TAAGATACCA ATAATGGTGC AAATTAAAAA AACACCAATA ATTGTACTTC ATATTTTGCT TTATCTCGAT TTGATTT

>Vigan.06G254800.01
GACTTGACAG GTTCTGCATA TAAAAATGGC ATCGTATCAG TTTCTCACTC AATTTTCTTT TCTTCAACGA AGAAGGAGAT
GTCGGCAGTG GAACAGCATG AGAAGGAGAA GGAGAAACTG CAGAAGGGAA TCGCTGAGTT CTACGACGAG TCCTCCACCA
TATGGGAGAA CATTTGGGGC GACCACATGC ACCATGGCTT CTACGACCCG GATTCTACCG TTTCGGTTTC GGATCATCGT
GCTGCTCAGA TCCGAATGAT CGAAGAGTCG CTTCGTTTCG CCTCGCTTTC TGAGGAGCCT ACCAAATGGC CGAAGAGAAT
AGTTGATGTT GGATGTGGCA TAGGGGGCAG TTCCAGATAT TTGGCCGAGA AATTTGGGGC AACCAGCGTT GGTATCACTC
TCAGTCCTGT TCAAGCTCAA AGAGCTAATG CTCTTGCTGC AGCTCAAGGA TTGGCTCACA AGGTTTCTTT TCAGGTTGCA
GACGCTCTGC AGCAACCATT CCCTGATGGA CAGTTTGATC TGGTGTGGTC CATGGAGAGT GGAGAGCATA TGCCTGACAA
AACTAAGTTT GTTGGAGAGT TGGCTCGGGT AGCAGCACCA GGTGGCACCA TAATAATAGT AACATGGTGC CACAGGGATC
TTGGCCCTGA CGAACAATCC CTAAAACCAT GGGAGCAAGA TCTGTTGAAG AAGATTTGTG ATGCATTTTA TCTTCCAGCC
TGGTGCTCAG CTGCTGATTA CATCAAATTG CTTAAATCAC TGTCACTTCA GGATATCAAG TCAGCAGATT GGTCTCCCTT
TGTTGCTCCA TTTTGGCCAG CAGTGATACG TTCTGCGTTA ACATGGAATG GCCTCACTTC ACTTTTGCGC AGTGGAGTGA
AAACCATTAA AGGAGCTTTG GCTATGCCAT TGATGATAAA AGGATACAAG AAGGGTTTGA TTAAGTTTGT GATCATTACA
TGTAGAAAGC CTGAATAAAT AAGTTAAATA TTATATTTAT TGTTTTGACA TAATTTATTT TAATAGTTGA AAAAAAATAT
ATAAGAGAAG CCTATTGAGA GTGAAAGGGG TGAAATGACA TCAAATGGAA GATATATGAA AATTCGATTC AGCTTCCGCT
AAGATACCAA TAATGGTGCA AATTAAAAAA ACACCAATAA TTGTACTTCA TATTTTGCTT TATCTCGATT TGATTT

>Vigan.06G254800.01
ATGTCGGCAG TGGAACAGCA TGAGAAGGAG AAGGAGAAAC TGCAGAAGGG AATCGCTGAG TTCTACGACG AGTCCTCCAC
CATATGGGAG AACATTTGGG GCGACCACAT GCACCATGGC TTCTACGACC CGGATTCTAC CGTTTCGGTT TCGGATCATC
GTGCTGCTCA GATCCGAATG ATCGAAGAGT CGCTTCGTTT CGCCTCGCTT TCTGAGGAGC CTACCAAATG GCCGAAGAGA
ATAGTTGATG TTGGATGTGG CATAGGGGGC AGTTCCAGAT ATTTGGCCGA GAAATTTGGG GCAACCAGCG TTGGTATCAC
TCTCAGTCCT GTTCAAGCTC AAAGAGCTAA TGCTCTTGCT GCAGCTCAAG GATTGGCTCA CAAGGTTTCT TTTCAGGTTG
CAGACGCTCT GCAGCAACCA TTCCCTGATG GACAGTTTGA TCTGGTGTGG TCCATGGAGA GTGGAGAGCA TATGCCTGAC
AAAACTAAGT TTGTTGGAGA GTTGGCTCGG GTAGCAGCAC CAGGTGGCAC CATAATAATA GTAACATGGT GCCACAGGGA
TCTTGGCCCT GACGAACAAT CCCTAAAACC ATGGGAGCAA GATCTGTTGA AGAAGATTTG TGATGCATTT TATCTTCCAG
CCTGGTGCTC AGCTGCTGAT TACATCAAAT TGCTTAAATC ACTGTCACTT CAGGATATCA AGTCAGCAGA TTGGTCTCCC
TTTGTTGCTC CATTTTGGCC AGCAGTGATA CGTTCTGCGT TAACATGGAA TGGCCTCACT TCACTTTTGC GCAGTGGAGT
GAAAACCATT AAAGGAGCTT TGGCTATGCC ATTGATGATA AAAGGATACA AGAAGGGTTT GATTAAGTTT GTGATCATTA
CATGTAGAAA GCCTGAATAA 

>Vigan.06G254800.01
MSAVEQHEKE KEKLQKGIAE FYDESSTIWE NIWGDHMHHG FYDPDSTVSV SDHRAAQIRM IEESLRFASL SEEPTKWPKR
IVDVGCGIGG SSRYLAEKFG ATSVGITLSP VQAQRANALA AAQGLAHKVS FQVADALQQP FPDGQFDLVW SMESGEHMPD
KTKFVGELAR VAAPGGTIII VTWCHRDLGP DEQSLKPWEQ DLLKKICDAF YLPAWCSAAD YIKLLKSLSL QDIKSADWSP
FVAPFWPAVI RSALTWNGLT SLLRSGVKTI KGALAMPLMI KGYKKGLIKF VIITCRKPE*