GBrowse Details

Vigan.06G251400.01

Basic Information:
Name: Vigan.06G251400.01
Multiple alignment
Variant Information
Position: Chr06:37502800..37505722 (+ strand)
Length: 2923
Functional Information:
Description: Similar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like. [XP_004505603.1, Cicer arietinum]
InterPro: Zinc finger, CHCC-type (IPR019401)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:161.84,62.62,61.92,48.84,82.32,138.61,100.45,49.58
Arabidopsis thaliana homolog: AT3G03070.1
Automatic updates:
Name: NM_001249322 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305499 (LOC100305499), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001349792 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max zinc-finger domain-containing protein (LOC100500382), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37502800..37502969 (+ strand)
Length: 170
Type: five_prime_UTR
Position: Chr06:37502970..37503086 (+ strand)
Length: 117
Type: CDS
Position: Chr06:37505010..37505094 (+ strand)
Length: 85
Type: CDS
Position: Chr06:37505230..37505339 (+ strand)
Length: 110
Type: CDS
Position: Chr06:37505340..37505722 (+ strand)
Length: 383
Type: three_prime_UTR

>Vigan.06G251400.01 class=Sequence position=Chr06:37502800..37505722 (+ strand)
TGGCCCGATC ACTTCATGAA CATTCTGTGA CTGACTTGTG TTGTTTTTCG TACGGAGGGT GCGGGTTTCA ATAGAGAAAG
AACATAGAAT ACGATTTGCG ATTCCTTCAT CTCCCGTGTG ATTCATTGAT CTGATAATTG AGTTGTGTGA TCGAATTTAG
GGTTTGGGAG ATGGCGTCGA GTGTTTTGAG GAACCTCATG AGATTTTCGT CATCGAGGAA CACGAGCACG AGAAGTTTCA
GCCTCGTAAC CTCTCAAATC AGCAACCACA CCGCCAAGTG GATGCAGGTA CATCCATCAC AACCAAATAT CATTTTTGTG
TCGTTGTAAA CCACCTCGCG TTTATTGCTA GCATATCCCG AACAAAGTAT CTTGTGTTTC ATCAAACTAA GTTCTGGAAT
CAATTTAGGT TTATTACTTG TTTTTATTTG TTGCCTACTA TTTATTGGAT GCTAGTTACA TAATTTATTC GGTAGAATTA
GGCAGATGTC CACGGTCACC TTCATTTGCC AGGATTTGTG GTTTCCTTTC TACTTTCATT GTTGTTTTAG GTTTGCTCTG
ATATTTGCTG GTGTATGAAA AATTTGTGGA TATGCGCAGC TTAGTTCCTT TTTGAAATAG CCTCTCTGTG CGGTATCAAC
GCCTATGTTA CAACTTGATA GAATAGAATT AGAGAGGTAA GAAACATCAG GAATGGCTAG ATCATGTGTG TACCTGGAGC
GGGGATGTGA TAAAGGATTG TAGTAAATGC TTTGGATGGA AAAATCTTCC GAGAGGCTTG CTAGGTAAAT TGTGAAGAAG
AAATCTGCAT TTAGAGGGAA GAAAACTTGA GGCAGCAGAA AGTGGGAATT AACGTTTGAA GTAGCCTGAG GGAAGGGATC
TACAGTGCCG ACTGGGAATT ACTGTTTAGG GAATGATTAC TAACCCTTCA GATCTATCCC TAAGCGTTAG CATGTTGCAG
TTTTGATGAA TAAACAGAAC CAAATTGAAA ATATCATCGG GAAAAACAAT TGGGTTCAGT ACTTCAGCTA GAAGAGGAAC
GATTCCAGTT TATTTTGGTT TGGTTATCCA TGTTTTGTTT GGTTCAACCT ATTAAACTTG ATACTATCAC TCTTTAAAGA
GTTGGCAATA GATTGAATGA CAATTATAAT GCAGCAAAAC TGAATAAAAA TTCTGAAAAT AAACAGCCAT TGCTTTATAA
CAATCACAAT ACGGTTTGAT GGGTGCCTTG TAAGGCGAAA TGAATAACTA GGAACGTAGG GTTGATTAGT AGAAATGGGT
GGCAATGATG AGAATGCAGT ACTACTCAAG AATACGATGA TAATAAATGA CAACCCCCAA CTTGATTGAA CAAAATTCAA
GGATCAGTTC ACAATGGAAA TTTTGAACAG TTCATCAGCA ATATAGGCAA CTTCTAATGA TTGAACGATG GTGATAGTGT
CAAACAATTT AACCACGTGA CAATGGATTC AAACAGTTTA ATGTGGCGGT GGTAGAGCTT TGAGGGTGAA CAAACATGGA
ATGATTTACT ACGACCCAGC TTTTATTCTG TGATATACTG GGTTGAGAAA CTTTTAAGAA TGAGATAAAG ACAGGTGTTA
AAAAATTGGA TTCTACATCT CTGAAGATAT CTCTGCCTGG TTGAAATTTG GTGTACGGTG GATAATTAAA TTAAATTGTT
TAATTGCTAA CCAACTCAAT TGAAATTGAT TTGTTGGATA TTTTTTTCAA TATGGACCAG TTTAACAATT TTGATTGCCT
TAGTTTGTTT TGTGGTTCTA TAATGCGAAC ACCAACATCT CTCAAGGTTT TTTAAGATTG CACAAAAATT CCTGTATTTT
TAACATTTAC AACAATCTCT TTTAAGGAGA CAGGATAGAA TGTTTTTCTA ACGATTAAGG AGGACTAATA TAATGTACAA
GTGGTGTCAG TATAATATTT TTCAAACAAT TAAAGGATTA ATGCAGTGAT AGAGAAAATT GGTAGGTTGT GCAATTCACA
AAACGATGGG AAGTGTTAAT GTTATTTACT CTGATCTAAA ATAAAGAGGA CAGTCGCTAA CTGGCTACAG CCAGTTAATA
GCAGTACCCC CTTTTCAGTG GCTCCAATTT CATGTATGTT TACTTTATCA GCAAACTTGT GGAATTCCTG CTTACAGAAT
TGTGCTTGGG AAGATGTGAA ACTTAACGTT TATTACTACT GTTGTAATAG GATACAAGCA AGAAATCTCC GATGGAGCTT
ATTAATGAAG TTCCTCCAAT TAAGGTTGAA GGCAGGATAG TTGCCTGTGA AGGAGGTATA GCTTTTTCTT CAAAATTCTC
TTTTTTTAGA TCATGCACAA GATTTAGCGG AGATACAAAC CTTATATAGT TTCTGGTCAT ACATTATTAT AGAAGTATAA
CTAATTTGGG TATTGCTGTC GTGGTTTCAG ATAGCAATCC TGCACTCGGA CACCCGATTG AATTCATATG CCTTGACTTG
CCCGAGCCAG CTATTTGCAA ATATTGTGGC CTACGTTATG TTCAGGATCA TCACCATTAA GATTGGTTTC TCCGTGTATT
CTGGTGTGCA TGTACGAAAT TTCTGCCTGT TTTTGGTTAC AATGCTTCTG ACTAAATCAT GGCGTAACAA ATATACTTCT
TTGTTACAAT TTGCTAAATA AGATGCTCAT GTACTATCTA TTTTGTTGGG TTAACGTTGT TAAGTGCAGT AAGTAATTGT
GACCCGAGGT ACAGCTTCAT TGAGCAATCT ATTTTATTTT AATTCTTAAT TTGCAAGCTC CTGAGCCCTG GTTACACTAC
CTTTTCACAA GCCAAGATAA TGAATGTAAG AAGCAACATT GAATGGTGTA AGAAGCTAGA TCATTAAAGT TGCCTTTGAG
GTCCTAATAA AGAAGAGATT GTAAGAGATT TTGGTATTCC AAA

>Vigan.06G251400.01
TGGCCCGATC ACTTCATGAA CATTCTGTGA CTGACTTGTG TTGTTTTTCG TACGGAGGGT GCGGGTTTCA ATAGAGAAAG
AACATAGAAT ACGATTTGCG ATTCCTTCAT CTCCCGTGTG ATTCATTGAT CTGATAATTG AGTTGTGTGA TCGAATTTAG
GGTTTGGGAG ATGGCGTCGA GTGTTTTGAG GAACCTCATG AGATTTTCGT CATCGAGGAA CACGAGCACG AGAAGTTTCA
GCCTCGTAAC CTCTCAAATC AGCAACCACA CCGCCAAGTG GATGCAGGAT ACAAGCAAGA AATCTCCGAT GGAGCTTATT
AATGAAGTTC CTCCAATTAA GGTTGAAGGC AGGATAGTTG CCTGTGAAGG AGATAGCAAT CCTGCACTCG GACACCCGAT
TGAATTCATA TGCCTTGACT TGCCCGAGCC AGCTATTTGC AAATATTGTG GCCTACGTTA TGTTCAGGAT CATCACCATT
AAGATTGGTT TCTCCGTGTA TTCTGGTGTG CATGTACGAA ATTTCTGCCT GTTTTTGGTT ACAATGCTTC TGACTAAATC
ATGGCGTAAC AAATATACTT CTTTGTTACA ATTTGCTAAA TAAGATGCTC ATGTACTATC TATTTTGTTG GGTTAACGTT
GTTAAGTGCA GTAAGTAATT GTGACCCGAG GTACAGCTTC ATTGAGCAAT CTATTTTATT TTAATTCTTA ATTTGCAAGC
TCCTGAGCCC TGGTTACACT ACCTTTTCAC AAGCCAAGAT AATGAATGTA AGAAGCAACA TTGAATGGTG TAAGAAGCTA
GATCATTAAA GTTGCCTTTG AGGTCCTAAT AAAGAAGAGA TTGTAAGAGA TTTTGGTATT CCAAA

>Vigan.06G251400.01
ATGGCGTCGA GTGTTTTGAG GAACCTCATG AGATTTTCGT CATCGAGGAA CACGAGCACG AGAAGTTTCA GCCTCGTAAC
CTCTCAAATC AGCAACCACA CCGCCAAGTG GATGCAGGAT ACAAGCAAGA AATCTCCGAT GGAGCTTATT AATGAAGTTC
CTCCAATTAA GGTTGAAGGC AGGATAGTTG CCTGTGAAGG AGATAGCAAT CCTGCACTCG GACACCCGAT TGAATTCATA
TGCCTTGACT TGCCCGAGCC AGCTATTTGC AAATATTGTG GCCTACGTTA TGTTCAGGAT CATCACCATT AA

>Vigan.06G251400.01
MASSVLRNLM RFSSSRNTST RSFSLVTSQI SNHTAKWMQD TSKKSPMELI NEVPPIKVEG RIVACEGDSN PALGHPIEFI
CLDLPEPAIC KYCGLRYVQD HHH*