GBrowse Details

Vigan.06G249900.01

Basic Information:
Name: Vigan.06G249900.01
Multiple alignment
Variant Information
Position: Chr06:37393475..37396007 (+ strand)
Length: 2533
Functional Information:
Description: Similar to Uncharacterized protein. [I1LP96, Glycine max]
InterPro: Proteasome maturation factor UMP1 (IPR008012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.32,64.39,77.53,56.97,158.42,151.99,86.72,69.97
Arabidopsis thaliana homolog: AT1G67250.1
Automatic updates:
Name: NM_001249113 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max proteasome maturation factor UMP1 family protein (LOC100500555), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:37393475..37393592 (+ strand)
Length: 118
Type: five_prime_UTR
Position: Chr06:37393593..37393727 (+ strand)
Length: 135
Type: CDS
Position: Chr06:37393998..37394098 (+ strand)
Length: 101
Type: CDS
Position: Chr06:37394462..37394559 (+ strand)
Length: 98
Type: CDS
Position: Chr06:37395558..37395658 (+ strand)
Length: 101
Type: CDS
Position: Chr06:37395659..37396007 (+ strand)
Length: 349
Type: three_prime_UTR

>Vigan.06G249900.01 class=Sequence position=Chr06:37393475..37396007 (+ strand)
GTTTTTGGCG ACTGAGAAAT CCCTTTATAT AAAAGCCGTT CCTTTGCACG GTGGCTTCTT CATTCTTTTC TTGGTGAAGA
AAAAAGAACA CGAAGAACGA AGGTCGAAGA AGACGAACAT GGAAGACGCA TCTGCATCAA AGTACATCCC GCACCAGATC
GGAGGGCTCC AAAACGACTC GTTTCGATTC GGACTCGATG GAGTCAAAAG CGACATTGTT GGTTCTCACC CTCTCCAATC
GTCTCTCCAA TCCGTAATTT CTCTCAACCC TATTTATCTC TCTTCACTGC AATTTCTCCT TTTAATCCTT TTCCGTTTTC
ATCAACTTCA CTATAGAACC GTTTCTTCCA ATTCCACGTG CTGCCTATTT CCCCTTTTTA ATTAGGGTTT CATTTCGAAA
CAAAAAATGC TTAGCTGAAA ATAGTCTAAA CTTTCATCGA TTCGAGCATA TTCACGTGTT TGTTTTTTCG CTTCTCTATT
AAGTGTTCGT TTTTTTTTGT GTGTGTGTGT TTGTGATTAT CAGACAAGGA GGATGGAAGA AGCTATGAAG AGGCAATGTA
AAGTTAATTT GTATGGAACT GCTTTTCCAC TGAAGGAGGA GCTTGACAGG CAAATATTGT CTAGGTACCT GCATTTGGAT
TCGATTTATC TATTGCATAT TTTGGTGTAG TTTCTTAGTG TGTTTCAAAA TTTAAAGCGT CAGTGATAAT TTGACATGAG
TTCCTGTTTG TGTCATTGGT TGCTGGTTAA GGAGTTGTAT TGTACACTAA AATTTTGGTG TCTCTATGAA TACGAAAAGA
GCTAAGAACA TGTGAATGAG ATTTTGATTA GTGATTAATT AATATCACCT TACCATTTTG ATAGTTCGTA GGGATGGTTA
GGTAGGCAGA AGCTTGACTC GTTATAGATC TTGTATTTGG GATAAAAAAT GTTTTTATTA ATGGAAAAAT GCATTTGAAT
TTGATGGAGT GCCAATGTTC CTTGTAGGTT CCAGCGGCCT CCTGGACCAA TTCCATCTTC AATGCTGGGC TTGGAGACTG
TTACAGGAAG CATTGATCAC TTCGGTTTTG AGGATTGTCT AAATGGTAAT AAGCTCTGTC TTTGTTTTTC GTGTTTATTA
GCCTGCTTTG AAACATTTGA TTTCAGATTA AGTTGTGTTT CCTGTATGAT ATATTGAAAT TATGGTTCAT TAGCACAAAA
TCTTGTAATT GTTATTTCTA AGAGTTGTGG TTGTTGTGCT TCATTTTCTG AATTAAAATG AAATATTATA ATTGTGCTTT
ATCAGTACTT GACATGAACT CCACAACAGG GTTTTGGATC TTTTCTTTTT TATATAAGAA TCGGAAGAAC TTACGCTCCA
AACCTTGAAA CAATATTCTC AACTGTTTTG GAACTGTTAT GTTTGTAGGA ATAACTGAAT GATAATTTTT GTTGGGTGTT
ATATGCAATT AAATACCATT TTGTTTTGAG ATGATTGTAA CAAAGCTTTT GTTATGAAAA GGAGGGATAC ATGCATGCAG
TTATATTCCT TTTGTTTTGA GATGTTTATA AAGGTAGACT TGCATGGTTT GAGGATATAA AGAGAAATCT ATATTAAAAT
CTTCGAAGTG GATTCATATA TCTTGAGAAT CTTCGACTTA TTTAGACTTA GATCAGGTTT TGAACCCTCA ATCAGGGATC
AAGGATGTCA AATATATTTA AATACTCAAT GGTGTTAAAA TATGCAATGG TGGGAAAAAA TGTTTTACAT GATTTTTATA
TAGCACATGA ATGAAATAGA TATATATCTT AGTTTATGAA CGAAACACAA TTTTTTCAAA ATAGAAAAAC ATATTTGACT
CGCTTAAGAT TTGACGAGCA TTGTAATTTA AATGCTATAG TTGAAGATAA ATGCATGGGA TGTATGAACT AGGCTTAATA
TTTTGAGCGA CGTTATTTCT AATGATTTGA GGCTATGATC GTGAATTTGG TATCCATGAT AATTAAGTAA TGCAATCTTA
ACTATTGCTG TTTTTTTATT CATTGGGATA CGACGTATTA TTGCTTTACT TCTGTCTCTC AATGTCATTG ACGTTATTTG
CAGACCCCCG TGACTCGGAG ACTTTCAGGC CATCCGACAT GCATCATGGG ATGGAAGTTC GCCTTGGTCT GTCTAAGGGA
CCAGTGTACC CAAGTATTAT ATAATTAAAT TTGAGTTTTA TGGTAAAATC TTCTTGTTAT TCATTAAAGA TGGAAGTGTC
CAAGGAACCT ACATATGCAA TCATGGACTT ATGTTTTCCT TTCGGTTTGG ATGCTACAAA TGTTATGGTC TATATATTAA
ACACAGCATG TCTTTCAGAG TAAATGCAGG CGTTTGAGTT GAGCATCCTT GTCTCGGATT ATAATTTTAT TCCCTTTTCA
CCCGTTTTCA ATACTCCATG CGAAGGGAGT CAATTTAGAA TGCATGGAAT TAAGAGAAAA AGGCCTGTCA ATAATGTATA
TAATGATAGG AAAATGGGAT TAGAAATTTC GAAATACGTT AAAAAAATAT TCG

>Vigan.06G249900.01
GTTTTTGGCG ACTGAGAAAT CCCTTTATAT AAAAGCCGTT CCTTTGCACG GTGGCTTCTT CATTCTTTTC TTGGTGAAGA
AAAAAGAACA CGAAGAACGA AGGTCGAAGA AGACGAACAT GGAAGACGCA TCTGCATCAA AGTACATCCC GCACCAGATC
GGAGGGCTCC AAAACGACTC GTTTCGATTC GGACTCGATG GAGTCAAAAG CGACATTGTT GGTTCTCACC CTCTCCAATC
GTCTCTCCAA TCCACAAGGA GGATGGAAGA AGCTATGAAG AGGCAATGTA AAGTTAATTT GTATGGAACT GCTTTTCCAC
TGAAGGAGGA GCTTGACAGG CAAATATTGT CTAGGTTCCA GCGGCCTCCT GGACCAATTC CATCTTCAAT GCTGGGCTTG
GAGACTGTTA CAGGAAGCAT TGATCACTTC GGTTTTGAGG ATTGTCTAAA TGACCCCCGT GACTCGGAGA CTTTCAGGCC
ATCCGACATG CATCATGGGA TGGAAGTTCG CCTTGGTCTG TCTAAGGGAC CAGTGTACCC AAGTATTATA TAATTAAATT
TGAGTTTTAT GGTAAAATCT TCTTGTTATT CATTAAAGAT GGAAGTGTCC AAGGAACCTA CATATGCAAT CATGGACTTA
TGTTTTCCTT TCGGTTTGGA TGCTACAAAT GTTATGGTCT ATATATTAAA CACAGCATGT CTTTCAGAGT AAATGCAGGC
GTTTGAGTTG AGCATCCTTG TCTCGGATTA TAATTTTATT CCCTTTTCAC CCGTTTTCAA TACTCCATGC GAAGGGAGTC
AATTTAGAAT GCATGGAATT AAGAGAAAAA GGCCTGTCAA TAATGTATAT AATGATAGGA AAATGGGATT AGAAATTTCG
AAATACGTTA AAAAAATATT CG

>Vigan.06G249900.01
ATGGAAGACG CATCTGCATC AAAGTACATC CCGCACCAGA TCGGAGGGCT CCAAAACGAC TCGTTTCGAT TCGGACTCGA
TGGAGTCAAA AGCGACATTG TTGGTTCTCA CCCTCTCCAA TCGTCTCTCC AATCCACAAG GAGGATGGAA GAAGCTATGA
AGAGGCAATG TAAAGTTAAT TTGTATGGAA CTGCTTTTCC ACTGAAGGAG GAGCTTGACA GGCAAATATT GTCTAGGTTC
CAGCGGCCTC CTGGACCAAT TCCATCTTCA ATGCTGGGCT TGGAGACTGT TACAGGAAGC ATTGATCACT TCGGTTTTGA
GGATTGTCTA AATGACCCCC GTGACTCGGA GACTTTCAGG CCATCCGACA TGCATCATGG GATGGAAGTT CGCCTTGGTC
TGTCTAAGGG ACCAGTGTAC CCAAGTATTA TATAA

>Vigan.06G249900.01
MEDASASKYI PHQIGGLQND SFRFGLDGVK SDIVGSHPLQ SSLQSTRRME EAMKRQCKVN LYGTAFPLKE ELDRQILSRF
QRPPGPIPSS MLGLETVTGS IDHFGFEDCL NDPRDSETFR PSDMHHGMEV RLGLSKGPVY PSII*