GBrowse Details

Vigan.06G243800.01

Basic Information:
Name: Vigan.06G243800.01
Multiple alignment
Variant Information
Position: Chr06:36894281..36897893 (- strand)
Length: 3613
Functional Information:
Description: Similar to translocon-associated protein subunit alpha-like. [XP_004505694.1, Cicer arietinum]
GO: Cellular Component: endoplasmic reticulum (GO:0005783)
InterPro: Translocon-associated protein (TRAP), alpha subunit (IPR005595)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.46,69.56,74.60,38.29,97.22,204.97,79.53,50.83
Arabidopsis thaliana homolog: AT2G16595.1
Automatic updates:
Name: NM_001253052 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max translocon-associated protein subunit alpha-like (LOC100820543), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36894281..36894791 (- strand)
Length: 511
Type: three_prime_UTR
Position: Chr06:36894792..36894917 (- strand)
Length: 126
Type: CDS
Position: Chr06:36895306..36895509 (- strand)
Length: 204
Type: CDS
Position: Chr06:36895613..36895690 (- strand)
Length: 78
Type: CDS
Position: Chr06:36896389..36896477 (- strand)
Length: 89
Type: CDS
Position: Chr06:36896705..36896755 (- strand)
Length: 51
Type: CDS
Position: Chr06:36896855..36897016 (- strand)
Length: 162
Type: CDS
Position: Chr06:36897661..36897730 (- strand)
Length: 70
Type: CDS
Position: Chr06:36897731..36897893 (- strand)
Length: 163
Type: five_prime_UTR

>Vigan.06G243800.01 class=Sequence position=Chr06:36894281..36897893 (- strand)
GAAAAACAGT ATTTAAGACA TATAAGCTAA CAGAGTATGA CCCACATGTA AACGACATCG TTGTTGGAAA TCTCCTTCTC
AAACATTACA AATTACAAAT CTGTGTTTCA GGGTTGAAAT TTCACACGTT GAAATTTGGT ACCAACTCCA GCCCTACACC
ACCATGGCCT CCATCCACAA ATTTTTGCTT TTCTCTCTCG CCCTTCTCCT CTTCGCTTCT CCTTTTCTCC AAGGTCTGCA
CCCTTGCTTC TAGATCTAGA TCTGTTTCAC CTTCTATCAA TGCTTCCTTG CATGTTACAA TTATCGTGAT TTATGATTTG
ATTGATGTGA AAAGATCCTA TTTTTACTTT TTGTGCCGAC CCAATCACTC CCTTTTCAGC TCTACTTTTC AACTCTGATC
TGCTTTTGGA TTGTTAAATT TTGAATCTTT TGGGTTCTGA TCTTTCTTGG AACCATGCGT TTTGTTCTTC TTTGATTGAT
TACTCTCAAT TCTTGCTGTG ATGTTAGAGA TAATGAAAAG ATTACTTTTT TAGTGGCGGG CAATTTACAA TCAGGCACTT
GACATTTACA TTTTTTAATG ATTGAGCCAA TTATCGAAAA TATGTGTTCT TTCAGTAGAT TTGAATCTAA ATACATAAGC
TAGGTGAAGT GACGGTGTAA TGCTATGTTT ATCTGGAATC TGGTTCTGTT CTATGCACTT TAAGTTTTGA TGCTTATGAT
ACTTGGATGT TAAAATTGGT ATCTTTTTTG CTGGCAGAAC GATGTATACA CTCTGCTATT CATTGTTTTT ATTTTACACA
CTGGATCTCT CACATAGTAT CGTATCCATG TTTTCATGCC TTTTGTGCAC GGCCATGATT CGATGTGTTT TTTTTAGTTG
CTAGGTGTCA GTCAGACTCC GATGATGCTG TGGATAACAT TGAAGAATCA AGCGATATTG GCATTGTTGG GGATGATGCC
CAAGACTTTG GTGATGGGAC CTTGTCTTCC GCTCCAGGAA TTGATACAAT AAGTGTATTT CCAAAAAACA GCGCACGATG
TAAGAATCAT ACTGTCTAGT GCACCAAAAT ATGGTTCACA AATCATTCTC TCTGTTTGAT AGAGGATTGA ATTTCTTTGT
TCTTGTGATA TGTTGCAGTG ATAACAGCTG GAGAAGAGTC AGAGCTGCTT GTTGGTGTTA AAAATGATGG TAATTCAATC
AAATTTGACA CTCAATGTTG TATTTTAGCT TGTAATGATT CTCAACATTC TTAACTCTCG TGTTTGTCAC TGGTCGGTAG
TTAAGCCGTT CGTTTTTAAC TCTTCACTTT TTTGTGATTC TGTTACATCA TTTCCTCACT GATGTATTGT GATTCTGTTA
CGTTATTCGT TCATTAGCAG ATTATAGCTT ATTTTTGTTT GTGTGGAATG AAACAGGGGA TTCAAGCTTG AATGTTATTG
CAATCAGGGC TAGTATTCAC CTTCCTTTTG ATCACAAGCT GCTGGTTCAA AATCTTACTA CCCAGGTAAT AAGTTGCTAA
CTATCCAAAG AAAACGTAGT TATTTATCTG TGATCAAGGA TTACACTGCC TGTGTTACTG TAAAGGATTA GTTATGCTCG
ATAAAAATTT ATGAATATTC TATAGAATTG GAACCAACAA TAGAAATATG TTATTTATTA TTTGTTCGAG GAAGAGAATT
TCAAATGTTC ATGAAAATAG TCTGGGTAGT AAAATATAAA GTATGCATTG TTTGCCTGCC CAAGAATTTG AAGATAAATC
TTTGAAAAGT TAGGTTTTAG AATGCTAGAA TTGTTAATCT TCACATGAGA AGGATTGCTT TATTTGTGTA TGAATATTGG
ATGCATATAT CTGATAACTC CATCCTTGTA TGCTGAAAGG GAGCATTGGA TGTATTTGTG ATATTTTCAT TTCCTTTTAT
TTTGGTTCCT GTTCTTCCCC ATAAAACGTT AGTTCATGTG TATGATTTTG TCAGTTTAGA TCATAGGCAA CCATCTAAAG
TAGTTCTGCA AGTCTATTTG GGAACAGTGA ATTATCATGA ACCAATTACG TGGAACTTAT GGTTAATAGT TCATTGCTCA
TGCTTTTACC ACGTGAAGGA AATGGTTATA TATGATCTTA CATCAGTATC ACTCCAACCT ATTATGATTC AGCAAATGGT
ATTGCATAAT TATTTTAAAT TCAATCTTTT GTTTTGATTG CAGGGTTTCA ATAATGGTTC TGTACCAGCC TCAGCACAGG
CTACTTTCCC ATATTTATTT GCAGTCAGTA AGTTCATGCA GGTATCTTTA TTGCTTCAAA GGCCAATGCT TATAGTTTCT
CAATGAGTAA GCATCACCGG AGACTATTAT ACTCATTATG GCTATTATTT TTTCTGTTAT GCAGCCTGGA AATTTTGATC
TTGTGGGCAC TATTATTTAT GAGATAGATG ATCATCCATT CCAAAGCGTC TTCTTTAATG GCACTGTTGA AGTTGCTGAA
GCTGGTGGTT TTCTTAGCAT GGAGTCTGTT TTTCTTGTTA CACTGGGGGC TGCTCTCCTT GTCCTCCTGG GGCTATGGAT
TCATGGTCAA ATACAACACC TTTCTAAGGT ACTAACACCA TTATTTTTTC AAATAACGTG CTTTCAAGGA TGCATTGTTA
TTTGCTAATG GTGCTCATAA AATCATCACC TCTATTTTGT TTTGATTTAT ACTGAGACTT TGTACTTGTT TTATTTGCCA
ACTACAAAAT GTGTCATGAT ATCACAATTC ATATTAATCT GTAACATAGT AGGAGAAGTC ATATATTCCC ATGGCTTTAA
GCTATAATGA ACTGATAAGG GTATTGCCAG TTTTTGGGTT CTAAGTTATC TAAAACAAGA GAATCCATTC ATTCCTGGAG
CATGAAAGAA ATTCACTCTT AATTTGAGTT TTTTGGGGAC CCCTCGAATC ACATATCTGC TGCCTTGTTC TGATAATCTG
ATTCATGTTT GTTCAGAAAA CAAAGAGGGC TCCAAAAGTT GAAGTGGGAA CAAGGTCTAC AGATGCTTCA ACTGATGAAT
GGCTACAGGT TTGTTCTTAT GCCTTGTACT ATACTTGTTG GATTTCATGT TTGATGCTTT AACCTTTGAT GTAACACTGA
TGGGTTTATG CTTCACTTTG TCTGCCCTTT ATTTTGACAC CTAGGGAACT GCATTTACCC AATCTCTGTC GAGCAAGTCA
AAGAAGAAGA AGTAGATAAG CAAATTCTCA CGTTCAGCCA CACAAGACTG TGCCATGGAA TACAGAATCA TGTTACTGAC
TAGGTTTGAG TTTAAGAGAG CACGACCAAG TAGCTGTGAA ATTTTGGCTG AAAGATCTAG CTTTCTGTTG TAGCTTAAGA
CTTTTTACGT TTCTCCATTC GAATGAAGTT GAGTTTTTTT TTGTTCTAAA CTAACAAGGA TTTGAATTAG GAATGATACA
ACTTTTGCGA TACGGCAGAG TTTTCATTAG ATAATGTTCA TTTTGTTTTA CGTACATTTT TGTGTTTACT GTCATCTTAA
GATGCTCTTT GGAACCGTAT AACATAGTAA GGAAGAACAC TCCTTCCAAA GTTGGCATCT TGATTTTAAT TCAACATAAA
AACGACATTT TGG

>Vigan.06G243800.01
GAAAAACAGT ATTTAAGACA TATAAGCTAA CAGAGTATGA CCCACATGTA AACGACATCG TTGTTGGAAA TCTCCTTCTC
AAACATTACA AATTACAAAT CTGTGTTTCA GGGTTGAAAT TTCACACGTT GAAATTTGGT ACCAACTCCA GCCCTACACC
ACCATGGCCT CCATCCACAA ATTTTTGCTT TTCTCTCTCG CCCTTCTCCT CTTCGCTTCT CCTTTTCTCC AAGTTGCTAG
GTGTCAGTCA GACTCCGATG ATGCTGTGGA TAACATTGAA GAATCAAGCG ATATTGGCAT TGTTGGGGAT GATGCCCAAG
ACTTTGGTGA TGGGACCTTG TCTTCCGCTC CAGGAATTGA TACAATAAGT GTATTTCCAA AAAACAGCGC ACGATTGATA
ACAGCTGGAG AAGAGTCAGA GCTGCTTGTT GGTGTTAAAA ATGATGGGGA TTCAAGCTTG AATGTTATTG CAATCAGGGC
TAGTATTCAC CTTCCTTTTG ATCACAAGCT GCTGGTTCAA AATCTTACTA CCCAGGGTTT CAATAATGGT TCTGTACCAG
CCTCAGCACA GGCTACTTTC CCATATTTAT TTGCAGTCAG TAAGTTCATG CAGCCTGGAA ATTTTGATCT TGTGGGCACT
ATTATTTATG AGATAGATGA TCATCCATTC CAAAGCGTCT TCTTTAATGG CACTGTTGAA GTTGCTGAAG CTGGTGGTTT
TCTTAGCATG GAGTCTGTTT TTCTTGTTAC ACTGGGGGCT GCTCTCCTTG TCCTCCTGGG GCTATGGATT CATGGTCAAA
TACAACACCT TTCTAAGAAA ACAAAGAGGG CTCCAAAAGT TGAAGTGGGA ACAAGGTCTA CAGATGCTTC AACTGATGAA
TGGCTACAGG TTTGTTCTTA TGCCTTGTAC TATACTTGTT GGATTTCATG TTTGATGCTT TAACCTTTGA TGTAACACTG
ATGGGTTTAT GCTTCACTTT GTCTGCCCTT TATTTTGACA CCTAGGGAAC TGCATTTACC CAATCTCTGT CGAGCAAGTC
AAAGAAGAAG AAGTAGATAA GCAAATTCTC ACGTTCAGCC ACACAAGACT GTGCCATGGA ATACAGAATC ATGTTACTGA
CTAGGTTTGA GTTTAAGAGA GCACGACCAA GTAGCTGTGA AATTTTGGCT GAAAGATCTA GCTTTCTGTT GTAGCTTAAG
ACTTTTTACG TTTCTCCATT CGAATGAAGT TGAGTTTTTT TTTGTTCTAA ACTAACAAGG ATTTGAATTA GGAATGATAC
AACTTTTGCG ATACGGCAGA GTTTTCATTA GATAATGTTC ATTTTGTTTT ACGTACATTT TTGTGTTTAC TGTCATCTTA
AGATGCTCTT TGGAACCGTA TAACATAGTA AGGAAGAACA CTCCTTCCAA AGTTGGCATC TTGATTTTAA TTCAACATAA
AAACGACATT TTGG

>Vigan.06G243800.01
ATGGCCTCCA TCCACAAATT TTTGCTTTTC TCTCTCGCCC TTCTCCTCTT CGCTTCTCCT TTTCTCCAAG TTGCTAGGTG
TCAGTCAGAC TCCGATGATG CTGTGGATAA CATTGAAGAA TCAAGCGATA TTGGCATTGT TGGGGATGAT GCCCAAGACT
TTGGTGATGG GACCTTGTCT TCCGCTCCAG GAATTGATAC AATAAGTGTA TTTCCAAAAA ACAGCGCACG ATTGATAACA
GCTGGAGAAG AGTCAGAGCT GCTTGTTGGT GTTAAAAATG ATGGGGATTC AAGCTTGAAT GTTATTGCAA TCAGGGCTAG
TATTCACCTT CCTTTTGATC ACAAGCTGCT GGTTCAAAAT CTTACTACCC AGGGTTTCAA TAATGGTTCT GTACCAGCCT
CAGCACAGGC TACTTTCCCA TATTTATTTG CAGTCAGTAA GTTCATGCAG CCTGGAAATT TTGATCTTGT GGGCACTATT
ATTTATGAGA TAGATGATCA TCCATTCCAA AGCGTCTTCT TTAATGGCAC TGTTGAAGTT GCTGAAGCTG GTGGTTTTCT
TAGCATGGAG TCTGTTTTTC TTGTTACACT GGGGGCTGCT CTCCTTGTCC TCCTGGGGCT ATGGATTCAT GGTCAAATAC
AACACCTTTC TAAGAAAACA AAGAGGGCTC CAAAAGTTGA AGTGGGAACA AGGTCTACAG ATGCTTCAAC TGATGAATGG
CTACAGGTTT GTTCTTATGC CTTGTACTAT ACTTGTTGGA TTTCATGTTT GATGCTTTAA 

>Vigan.06G243800.01
MASIHKFLLF SLALLLFASP FLQVARCQSD SDDAVDNIEE SSDIGIVGDD AQDFGDGTLS SAPGIDTISV FPKNSARLIT
AGEESELLVG VKNDGDSSLN VIAIRASIHL PFDHKLLVQN LTTQGFNNGS VPASAQATFP YLFAVSKFMQ PGNFDLVGTI
IYEIDDHPFQ SVFFNGTVEV AEAGGFLSME SVFLVTLGAA LLVLLGLWIH GQIQHLSKKT KRAPKVEVGT RSTDASTDEW
LQVCSYALYY TCWISCLML*