GBrowse Details

Vigan.06G243300.01

Basic Information:
Name: Vigan.06G243300.01
Multiple alignment
Variant Information
Position: Chr06:36852888..36856593 (- strand)
Length: 3706
Functional Information:
Description: Similar to Uncharacterized protein. [I1LPH2, Glycine max]
GO: Molecular Function: aminoacyl-tRNA hydrolase activity (GO:0004045)
InterPro: Peptidyl-tRNA hydrolase, PTH2 (IPR002833)
Peptidyl-tRNA hydrolase II domain (IPR023476)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.56,15.35,15.95,18.71,12.78,23.48,19.09,18.45
Arabidopsis thaliana homolog: AT5G16870.1
Automatic updates:
Name: NM_001250574 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527794 (LOC100527794), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289372 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-tRNA hydrolase 2, mitochondrial-like (LOC102664938), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:36852888..36853307 (- strand)
Length: 420
Type: three_prime_UTR
Position: Chr06:36853308..36853357 (- strand)
Length: 50
Type: CDS
Position: Chr06:36853642..36853668 (- strand)
Length: 27
Type: CDS
Position: Chr06:36854760..36854829 (- strand)
Length: 70
Type: CDS
Position: Chr06:36855685..36855754 (- strand)
Length: 70
Type: CDS
Position: Chr06:36855842..36855901 (- strand)
Length: 60
Type: CDS
Position: Chr06:36856112..36856170 (- strand)
Length: 59
Type: CDS
Position: Chr06:36856262..36856492 (- strand)
Length: 231
Type: CDS
Position: Chr06:36856493..36856593 (- strand)
Length: 101
Type: five_prime_UTR

>Vigan.06G243300.01 class=Sequence position=Chr06:36852888..36856593 (- strand)
CTTGTAATCA GAAATTGGCC ATTTACCAAT TTATCCAAAA AAAAGCGTAA GATTGTGTGA TATTGTTTGC TTCCTCAGAA
ACCCTAAAAG TTGAATCATA GATGGAACTG ACATGGTTGA GTGCCATTCT GGTGGGAGCT GGTTATCTTG CTTTGGGTTA
CTTCATTGGT TCTCAGTATC CTCCTCGTTT CATTTTCTCA CGTAAATTAT TGACGAAAGA CAACGATGCT ACACTTTTCA
ACGATACCAA CAATAAGAGA AATAGTAAGT CCAAACTCAA AGACCCTCTT CAGATTGAAC AACTAGCTGA CATTCTCGAT
GATTTTAAGA TGGTACGCAA AAATCCCTTC TTTTTTTTCT TTTCTCAATA CCCATCTACT CAATCTTAAT TGGCTGCCTC
AAAAATTGTT CCTTTTTCTG CAGATTCTCG TTGTCAGAAA TGATCTTAAA ATGGGCAAAG GGAAGATTGC TGCTCAGTGC
AGGTATGTAG TTTTTCAAAG TGTTAATTTT GAATGTGCTG AGAGTTTGAG ACTTCTATCA ATCTGGTTGT CTAGTTTGTG
GACTGATTTA TAGCTCTCTC TTTTTCATTT ATTTTTATCT TCTCTTAATT TCTATCGACT TTTATGTTAT TAATGTTCAA
TAAAAACCTG ATAAATGGTT CGAACTCACT ACTTCTTTCT GTTTTTTGGC AGTCATGCAA CGTTGGGTCT CTATAAAAAG
CTCCTTCATC GAGCACCAAA GGCGTTGAAT AGGTACCAGA GTAACTTTGA TTACGCTTGA AGGTTACTCT GCATTGTATA
ATTTCATTCT GAAGTCTACG TCAATATCAA TGTATACAGG TGGGAGATGT CTGCGCAGCC AAAGGTTGTT GTCAAAATTG
AAAGTGAAGA AGATATGCTT GCTATGCAGG TGAGTATTAT TTAGGGAAAT TTTCTGCATT AGCTATGTTT TTGTGTGATC
TATTTTATAA ATTGCATTTG GTACTTGGCT CCTATAATGC ATCTAGAAAG AATGTTAGCG GCACACTTTT TTATTCACTG
GATACTATCG ACAGAAAAAT ATTGAAAATC ACAATTTTTG GTTTTCTTAT ATTTCTGAGT CTCACTCACC GTTTTTGAAG
TTTCTAATGA GTTTTAACCA ATAATAAGTG TGTTATAAAG GATGCCTTAG AAAGAGTGTG TTGTTAGCAT TCCCTATACA
CATTAATCGG TTATTTGATC ACAATGAATT TTGATTGGAA ACCAATTAAC TTTAATTCAA TAAGAAAGAT GTAAAGTTGC
CTATCTTTTG CTTTATCTTG TAAAAATTAG GTTGCAAGTT TTGTTGTAGG ATTTGACCCT GTTAAAGGGG TGCACATTAG
AGGATAAATG TGGAGAGATA GCTGTTAATG GAAAAGTCAA TAGCTAGATT GTAACAGTAA ACGAACTGTT AAATGATGAA
GATATCAGTA GTTGATTTTC ACTCAATAGT TATAAGTCCA CACTTTTTCC CATGAAGTGA ACCACATGAA GTAGTTTGAC
CATTACATGA GAAAATATGC AAAGCAAGGT CAGCGACTAG GAGTAAAATA GAAAATTCAC ACTTTTTTTG ACACTTCAAC
TAGTGAATAG AAAAAGGAAA AGTCAGTTTT TAACTTATTG GAAGTGCCTA AAGTATTTTT TGCTACATTT TTTTCCTTAC
CATTTATCTT GATTCTTTTT ATGCATGGCT CCTTCTATCT AAAGCTGGTT TTTGTTTTTC CCAAAATATT GCTTAATGAG
TTAGGAAAGG GCTAAATCTC TGAAGTTACC CACCCATATC ACAATTGATG CTGGGAGAAC ACAGATTGCA CCAAGTGAGT
ATTTGAAAAT TCCTCTAAGT AGTTGCTTAT AGATATCAAA CAGCTTTTAT CAAGTATCAA CTAACTAGTT GTCAAGTTGT
ATGAAATTTT GTGAATGAGA AATTTCAATT CTTAAAAAGT TATTTAAACG ACAATACTTA CTCTTGCATT AAGGGAATCT
TCTCTTTCTC TCACACTTTT TGCCACAGAT CTTGGTTAAA TTGTGTATAA TGTTACTGTA TCTATGGAAG TCGTCGATAA
CCTTCTATGC CCGCATTTTC TCCGTGTATA TGTATTGGAT ATGTATCTGA TATGGAAACT CTTAGATGCT TCACCGGTAT
CTTTGAAGTA TATAAGTTTC TTGACTTTTT GAATCTAACG AAGACAGTAT ACGATAAAAG CATAATGGTA AAAGCATAGA
AACATTGCCC CTTGATGAAC TCAATGTTGA AGCTATCCTC TTTACCAATG ATATTCAAGG ACAGTATACG TTTTATTCCT
ATATGTTGGC AGTAGGCAAT GATATATGAT AGCAATTGAT TATAATTTTT TTTATTTCAT TACAGTTCAC CAACTCCTTG
ATTTAGATTT TTGGAATTGC AACTATATAT TTATTATCTG TTATGATGCC ATTATGTGTA TACATGTATC TTGCACATAT
TGTATCATAT ATATTTGAAG AGTAGTTGTA TTGTGTTGGG TTTGTATTTT ATCCAATACT TGGACTGTGT CTATGCATCA
TAGGAAGCTG TGGACAGCTA GAATTGCAAC TAGAGTGAGT TTCACAGCAT TCCACTGGAA AATGTTCATT CCATGGTCGT
TTTTTAATAT TGAACTTTAA TTCATGCTCG AAAATGTTGA TTCATGCACA CATTCTGAAT AGTAGAGTTG CTAAATTGGT
TCTTTGGACT GTATATAATT TGTCTATCTC GTGTGAGAAA AGCTTGTTTG ATTTCTATGT TCAATAGTAA AGTTAGATAA
ATGACTGGTT TTACTTTGGT TATTCTATAC GTATTCTACC TGTTTTATCT GTATAATATG ATTTTTTTGT ATATATTTAA
TACGTTTTGC AGTTAATTTA CATTTATTTT TCCTTTTTGT TCTAGATTCC AGAACAGTGA TGGCAATTCT TGGTAATACT
CTCCTCTACT GAATGAACTC TTTTGGTTAT GCAAATTCTT CTTCTTTTAA TTACAAAATA GTATTTTTTT TTGTCTGCTT
TCGAATATTT GTATATGAAA TAGTAAAAGG AAACAATAAA AAACTGTTTT ATTATTTTCT ATACAAATCT TTGAAACCGG
AAAATAAAAT GATAATTTGG TGACGTTTAA CAGAGAGTAA AAACTGATTC TTATCATTTA GATTTTCATT TTATAGAACT
AGAAGTAGTT TGATGTAAGG TGATATTGAT GTGCAGGACC CGTTGAGGTA GTAGATGAGG TAACAGGTGG ACTTAAACTA
CTATAGTCTT CTGTCGGATC AACATGGTGC TGTTGATCAT GAACCGCGAG TGTTCACGAA GGATAGCAGC TCGAACTAAT
TATGAACCGC GTGAAGATTT GCTGTGTTCT TTGTCTACAA AATGATTTGG GATTAATCTT TAGTTGACAG TGATGATGAT
GATAATGATG ATGATGAAAT TTTTGTTTTA AAATCCTGGC TGATAAAAAC TGTGGAACTG AGTTCAGTTT GTATGAGATA
TTATTTATAT CAGGGTGATT CTTGGCTTCC AAAATGTTAT TTATGGTGAT TCCATAGTTT TTGGATGGTG GTTCTTGATT
GATTTTCTAA GGTATTTGAA TTTCTCTGTC ATTGGATTTC ACTGCATAGA ATAATTTCTA TAGAAGTCAA GTCTTACAAC
AAAACCCTTG CAATCCAAAC CATTCA

>Vigan.06G243300.01
CTTGTAATCA GAAATTGGCC ATTTACCAAT TTATCCAAAA AAAAGCGTAA GATTGTGTGA TATTGTTTGC TTCCTCAGAA
ACCCTAAAAG TTGAATCATA GATGGAACTG ACATGGTTGA GTGCCATTCT GGTGGGAGCT GGTTATCTTG CTTTGGGTTA
CTTCATTGGT TCTCAGTATC CTCCTCGTTT CATTTTCTCA CGTAAATTAT TGACGAAAGA CAACGATGCT ACACTTTTCA
ACGATACCAA CAATAAGAGA AATAGTAAGT CCAAACTCAA AGACCCTCTT CAGATTGAAC AACTAGCTGA CATTCTCGAT
GATTTTAAGA TGATTCTCGT TGTCAGAAAT GATCTTAAAA TGGGCAAAGG GAAGATTGCT GCTCAGTGCA GTCATGCAAC
GTTGGGTCTC TATAAAAAGC TCCTTCATCG AGCACCAAAG GCGTTGAATA GGTGGGAGAT GTCTGCGCAG CCAAAGGTTG
TTGTCAAAAT TGAAAGTGAA GAAGATATGC TTGCTATGCA GGAAAGGGCT AAATCTCTGA AGTTACCCAC CCATATCACA
ATTGATGCTG GGAGAACACA GATTGCACCA AATTCCAGAA CAGTGATGGC AATTCTTGGA CCCGTTGAGG TAGTAGATGA
GGTAACAGGT GGACTTAAAC TACTATAGTC TTCTGTCGGA TCAACATGGT GCTGTTGATC ATGAACCGCG AGTGTTCACG
AAGGATAGCA GCTCGAACTA ATTATGAACC GCGTGAAGAT TTGCTGTGTT CTTTGTCTAC AAAATGATTT GGGATTAATC
TTTAGTTGAC AGTGATGATG ATGATAATGA TGATGATGAA ATTTTTGTTT TAAAATCCTG GCTGATAAAA ACTGTGGAAC
TGAGTTCAGT TTGTATGAGA TATTATTTAT ATCAGGGTGA TTCTTGGCTT CCAAAATGTT ATTTATGGTG ATTCCATAGT
TTTTGGATGG TGGTTCTTGA TTGATTTTCT AAGGTATTTG AATTTCTCTG TCATTGGATT TCACTGCATA GAATAATTTC
TATAGAAGTC AAGTCTTACA ACAAAACCCT TGCAATCCAA ACCATTCA

>Vigan.06G243300.01
ATGGAACTGA CATGGTTGAG TGCCATTCTG GTGGGAGCTG GTTATCTTGC TTTGGGTTAC TTCATTGGTT CTCAGTATCC
TCCTCGTTTC ATTTTCTCAC GTAAATTATT GACGAAAGAC AACGATGCTA CACTTTTCAA CGATACCAAC AATAAGAGAA
ATAGTAAGTC CAAACTCAAA GACCCTCTTC AGATTGAACA ACTAGCTGAC ATTCTCGATG ATTTTAAGAT GATTCTCGTT
GTCAGAAATG ATCTTAAAAT GGGCAAAGGG AAGATTGCTG CTCAGTGCAG TCATGCAACG TTGGGTCTCT ATAAAAAGCT
CCTTCATCGA GCACCAAAGG CGTTGAATAG GTGGGAGATG TCTGCGCAGC CAAAGGTTGT TGTCAAAATT GAAAGTGAAG
AAGATATGCT TGCTATGCAG GAAAGGGCTA AATCTCTGAA GTTACCCACC CATATCACAA TTGATGCTGG GAGAACACAG
ATTGCACCAA ATTCCAGAAC AGTGATGGCA ATTCTTGGAC CCGTTGAGGT AGTAGATGAG GTAACAGGTG GACTTAAACT
ACTATAG

>Vigan.06G243300.01
MELTWLSAIL VGAGYLALGY FIGSQYPPRF IFSRKLLTKD NDATLFNDTN NKRNSKSKLK DPLQIEQLAD ILDDFKMILV
VRNDLKMGKG KIAAQCSHAT LGLYKKLLHR APKALNRWEM SAQPKVVVKI ESEEDMLAMQ ERAKSLKLPT HITIDAGRTQ
IAPNSRTVMA ILGPVEVVDE VTGGLKLL*