GBrowse Details

Vigan.06G234400.01

Basic Information:
Name: Vigan.06G234400.01
Multiple alignment
Variant Information
Position: Chr06:36181257..36186492 (+ strand)
Length: 5236
Functional Information:
Description: Similar to Peroxisomal ascorbate peroxidase. [Q5QIA9, Vigna unguiculata]
GO: Biological Process: response to oxidative stress (GO:0006979)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: peroxidase activity (GO:0004601)
Molecular Function: heme binding (GO:0020037)
InterPro: Haem peroxidase, plant/fungal/bacterial (IPR002016)
Plant ascorbate peroxidase (IPR002207)
Haem peroxidase (IPR010255)
Peroxidases heam-ligand binding site (IPR019793)
Peroxidase, active site (IPR019794)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:125.81,103.64,71.05,123.77,36.00,76. 24,47.97,47.41
Arabidopsis thaliana homolog: AT4G35000.1
Automatic updates:
Name: NM_001251432 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal ascorbate peroxidase (LOC100170727), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Name: NM_001354113 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ascorbate peroxidase (LOC100170737), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:36181257..36181454 (+ strand)
Length: 198
Type: five_prime_UTR
Position: Chr06:36181455..36181570 (+ strand)
Length: 116
Type: CDS
Position: Chr06:36181725..36181849 (+ strand)
Length: 125
Type: CDS
Position: Chr06:36182097..36182146 (+ strand)
Length: 50
Type: CDS
Position: Chr06:36183460..36183525 (+ strand)
Length: 66
Type: CDS
Position: Chr06:36183612..36183660 (+ strand)
Length: 49
Type: CDS
Position: Chr06:36183803..36183885 (+ strand)
Length: 83
Type: CDS
Position: Chr06:36183971..36184050 (+ strand)
Length: 80
Type: CDS
Position: Chr06:36184186..36184288 (+ strand)
Length: 103
Type: CDS
Position: Chr06:36185903..36186094 (+ strand)
Length: 192
Type: CDS
Position: Chr06:36186095..36186492 (+ strand)
Length: 398
Type: three_prime_UTR

>Vigan.06G234400.01 class=Sequence position=Chr06:36181257..36186492 (+ strand)
CGTGGCAATA GCGAAGTGGG AAGGCATGGG AATATGCCAT GGTAATGGGA GCACCACCCA TACATACAGC ACAATTATCC
ATTCACTCAT TCATTCAATA CATTCTCAGT TAGCAGTTAG CAGTGCAGTG AGTTTTGCTT CTTTCTTGTT TGGTTTCTCC
TTTGTGCGTG TCCAAACAGA TTCCGTTATC CCCTGAGCAT GGCGTTGCCG GTGGTGGTGG ACTCAGAGTA CCTCAAGGAG
GTCGACAAGG CTCGCCGCGA TCTCCGTGCA CTAATCGCTA ACAGGAACTG CGCTCCTCTC ATGCTTCGGC TAGCGTATGT
TTTCCTTCTC TATTTCTTTT ATTTTTTCCA GCTAAACAGT TTGATGCTGA TACTTAGGTT TCGAGTTTTC GTTTCTTACG
CGGTCAACGC CGCCATCGTG CGATTATATT TCGTTTTTCC GTGCTTGAAA TTGCTTAATC TGATGCAGCT GGCACGATGC
CGGCACTTAC GATGCCAAAT CCAAGACCGG TGGACCTAAC GGTTCTATCC GAAACGAGGA AGAGTTTTCT CACGGTTCCA
ACAATGGCTT GAAAAAGGCT ATTGATTTCT GCGGTATGCT TTTTCTTGTC TCGCTCGCTT TTATTTGCGC CTTGTGCTAT
TTGAGTATTG AATTTATAAT AGGATATATA GGCTTGAATT TTATTTGTAT ATTGGCGTGG TCCTGCGTTG TGTTGAATCG
AGATTCGAAC CTATTCCAAT CGAACTTGCT TAGGATATTT TTTACCAAAA TAGTATGCTG GTTGTAATTA TGCCGGTCCC
CTTATTTTTC TAAGAGTTGG CTTATTTTCT GATGTCACAG AGGAAGTGAA GGAAAAACAT CCTAAGATTA CGTACGCAGA
TCTTTACCAG GTGATCATTC TGTTTTCATT CAGTTGTTTG TTATGAAAGT CTGTAGTGAA TCTGATAATT TGGTACTGAA
TTGTTTTGCG ATAATTGTAG AATGTGGTAA ATGAACTTCC AAAGTTGTGT GAGATGTATA TGGTAATTGA TTCAGGGTTC
CATTTTCTGC AACTTTTGAT TCAATTTACT CTTTTCGTAC GCTGTTTTTT ATGCAAATCT CGTGGATGCT GGCTAGGCAT
TGGCTTTTCC GTAGTGCCAG GTGGTGTAGT TTATGACTCA TGTTTCATTT TTGTTGCCTG ATATTGAATT TCAGTACGAG
GTCGATGGAT GAATAGTAAA GTTACAGACC TATCTAGTCC AGTGATGCAG TGCCCTTTTA CACTTAAGGC CATGCTGTCA
TAATGTGTTA CATCCCTGAC TACTTATAGT TTAACTTTAC AACCCTTTAT GCGGCTGTGA TATTGTGATT AGTGGTTGTG
ACTATCATAC CTTTTTGATA TGTTTGAAAA TCACCAAAGG ATCTGCAACG TAAGTGCAAT CAAAGTCCTC AAACAAAATT
TTCTTCATTC TTTCTCTTTC TTTACTTGGT AGATTTAGGA AACTTTGAAG GGTGGGGGGA TTTTAGGATG TTGGCAAATT
GGTGAACGGA AGGTATTATT TTAAAGGCAT TTACGGCCTG TTTAATACTA CATATGAAAT GTCTCCCTCT CAAAAGAGGG
CGGGAAATCC TTAATACAAT AATTATGGGT AGCTATGTCA ATTTTTGATA AAGAGCTATA CTACACCTAG ATGTTGCCAG
TTAAAAAGCT TGCAGGAGTA CAATTAAAGG TGGAGCTCCT CTGTTCGTTA ATGCAATGCG TTTCAAGTTT TAATAGTTTA
ATCATTTCCC TCCTTGTGGT TCAATTCTTT TGTAGCTAGT TTTGACATGC ATATAATTAA CGTTAGTGCT TAAGATTTCT
GCAACGAAAT TGAACACCAT TTGACTGGAT TTTCTTATGC ATTTTTGTAC TAATGTTAAG GTTAGCAAAT GTGAGCAATT
TCATATTCTG AAAATAAAAG TTTCCCTTAA CGTTTCTGAA ATATTTTATG TCAGAATCAA GCGTTTACTG GATATTTGTG
TATATGACGC ACCAGTCCAT TAAATCCGAT GAGTGCATGA ATTTAGATTC TGTTGAAACA GAGAGGGGGG AGATTATCAC
TCATGGGGCT TACGTTATAT AAAATAAGAC TCACATTCTT AAGTAGAGAA ATAAATTAAC TGCCTTATAG ATTAGATTAT
ACAATCTGCT CTAAAATAAT TTCTTTCTCC ACGTGCTTTC CAGCTTGCTG GTGTTGTTGC AGTTGAGGTT ACGGGGGGTC
CCACAATTGA TTTTGTCCCT GGTAGAAAGG TTGGTTGTGC CATACAAAAT TGGAATATTT CTTGTTATGA AATAATGGAA
TCTTGTTTAA TTGATGTTAT CTTCTATTCT TGCAGGATTC AAAAGTATCC CCTAAAGAAG GGCGGCTTCC TGATGCTAAA
CAAGGTGTGT TTTTAAATTT TGTCAGTAGT AGAACTGTTC CCTTTTCCTG GACGGTGAAA TATGTTATAT ATTTTCTATT
CCCTTCACAA TGGACTAGGT TAAGAATTTT AATGAAAGCA TAAGAATTTG TCAATGCTAT TTGTAGGTGT TTCACATCTC
CGTAATATCT TCTATCGAAT GGGCTTGACT GATCGAGATA TCGTTTCACT GTCTGGAGGG CATACGCTGG TAATTCTCCT
TGTGTAATAT CTCTTATATT ACTTGCTGTG ATTATGGATA GATATACTTA CCTTAATTTC TGTGGTCTTA TAAGGGGAGA
GCACATCCAG AGAGATCAGG GTTTGATGGA CCTTGGACGG AGGACCCTCT GAAGTTTGAT AACTCTTACT TTGTGTAAGA
CTCGTGTTGT GTGCAATAAT ACTATTAGCT TTATCTGTTC TAGAAAAACA TTTTATAGAG CTTCACTAGT GCTTTGCAAT
ACATAAAGAG TTTGATTTTT GTCTACAACT GAATATCACC GTTAAACAGG GAACTTTTGA AAGGCGAGTA TATTGGGCTG
CTCAAACTTC CAACAGACAA GGCTTTGTTG GAGGACCCTG AATTTCGCCG TTACGTTGAA CTATATGCGA AGGTAATTGA
GATTAATTTA AATAACTACC ATTGGATATC TGTTTGTGCC GTGTCCAAAT TACCAATTAA TGTTTCTCAG TCGTGTTTCA
TCGGTCTGTT TGTCTAGTAT AAGCACCATT AAGCTTGTAA ACTTATTGCA TTAATTATTA GGTCAATCTT TGTCCTGATT
TATCTCTAGG GTTGGTCTAG TGGTGAGCGA TTTGTGTTGT ATTCGTAAGG TAGTAGGTTC TATTCTCATT GCGACATTGG
CACCGTTGTC CATAATAAAA TCTCTTGGCC TGAGTTCATT AAGTAGTGAT TGATTAGTCG GACCCTTCTT ACCCATAAGC
GTTGTGCTTT GGAGTTTACT ACGCTATCTT GGCACTTCAT AAGTTAAGAT GGTATATTTC CCGTTGTTAG GTTGGTGGCT
AAACCAACAA ATTAACTTAC TTAATGTGAC ATCGACCTTT TATCCATTGG TTGGTCAGGT ATAAATAAAA CTATTTACTT
TTCCGGCTAT TGACCATACC TTGTCCGTTA TTTTTTTTCT TTTTACATTG ATGAAACTAA TTTTTACATT AGACTATATA
ACATGCCTGT TAGCCTGGGA TATCGCTAGA CTTAGATTAT TGGGTGTCCA ACCGTAGAAC AATTTTACAT AAACATAACT
CTCAAGTTTC CATGCTTACA TAAATTATAA GAGAATTACA ATTATAATTT AATTGTCTAA TGAATTGCAT TGCACCCACT
GAGCCCTTGT GATTTCCTGC ATTACATTCA ACTTTTAAAA TAACTATAGT ACTTATTTAA TTGAAATATT TTGCAGTTAT
TATAAAAAAA TATTATAATG TTTTCCATGG TCCGTGGCTT TGGTACAATA TTCACGGACA CGGTAATTTC CTTAAAACCT
TTGAATAATT TAGGTCATAT AGGTGTCAAA ATGTGATCAA ATCATGGTAG AGACTCAGAG ATTATAATAA ATCAATGGTT
GAATTAGAAT AAGGAAAAAG AAGATAGCGA TCATTCTTAA ATCATAGGTC CCTCATTCTA TTTCTGTTAC AAACGCACAG
TCTCACCCAA GGAAAAATAA GTAGGGAAGG GGATTGAAAT TTGAAGGTTG TGCAACTCTC TATGTGCTTT CAAATAAGAG
CACGGTGCAT GAGAGGACAA ATAAGAGAGA AAAAGGATTT CGAAAAGGTT AAGGAGTTTA CTATATTTCA TGTATGACTT
CCTTTACAGT CCATAAATAT GATTAAATCA TAAAGTAAAG AAATTATAAC TCGCACTATA AATAACCAAT AATTATACTA
AAACTGTCTA ATGATGAACA TCAACAATTC TGCTTCCCGT TTAAAAGTGA TGGTCTAGTA ATACTATTGT GAAAGAGTGG
TATTCTATTT GAATTGTGAT TTTTTTCGTT ACACGTTCAC AGACTATTCT AATTGGTGTC CCTGCTCTTA GCGCTTATGT
AGAGTTTTAG ATTAACTTTA GACATTTAGG AGAAGTTTAT GTTTTGCTCT ATTAAAGAAA ATTAAGAGCA TAGCTATTTG
AAGCAAAGTT GTGATTTCTG TTAGTGTATC ATTGAATTGC TTGAATCTGT CCGTTGTCTT ATATTTTTAA ACTGTCACTC
GGGCAGGACG AGGATGCATT TTTCAGGGAT TATGCTGAAG CGCATAAGAA ACTTTCAGAG CTAGGCTTTG TGCCAAGTTC
AAAGGCGATT TCTATTAAGG ATGGGACCGT ACTGGCACAA GGTGCTGTAG GAGTTGTAGT TACTGCGGCG GTGGTGATCC
TCAGTTACTT GTATGAAGTT CGCAAAAGGG GGAAGTAGAC CGGGACATGT TCATCTCTCT TGGATGTTAC ATTTGGTTGA
CCCCGACCCA TTATGTGCAA AATAGGGTTC ATTTTTGCAG CTTCAGTTTC TGTTTACTTG GCACCAATAA AGAATAATGC
CACAGCCACG CTGACTTTTA TATGAATAGA CTAAAAATAT CCTGAATACT CAATTTAAGC GCAACGTCAT AATACGTAAA
TACAAAAAAT TTAGCATTCC CAGTTACGTG TTATTCACTG TAAGGTTAGA GGAGGGTAGA CATGCTCATT TGCTCAAATC
AAAAAGGCTA ATTTGTCATG CATGTTTCGT GCCAGGAAAT CAGAATTACA AAAACTGGTA CTGCGCTAGC TGAGATTTAA
GAAAATCATG CATTAAGTTA GTCTGCAGTA GACTAG

>Vigan.06G234400.01
CGTGGCAATA GCGAAGTGGG AAGGCATGGG AATATGCCAT GGTAATGGGA GCACCACCCA TACATACAGC ACAATTATCC
ATTCACTCAT TCATTCAATA CATTCTCAGT TAGCAGTTAG CAGTGCAGTG AGTTTTGCTT CTTTCTTGTT TGGTTTCTCC
TTTGTGCGTG TCCAAACAGA TTCCGTTATC CCCTGAGCAT GGCGTTGCCG GTGGTGGTGG ACTCAGAGTA CCTCAAGGAG
GTCGACAAGG CTCGCCGCGA TCTCCGTGCA CTAATCGCTA ACAGGAACTG CGCTCCTCTC ATGCTTCGGC TAGCCTGGCA
CGATGCCGGC ACTTACGATG CCAAATCCAA GACCGGTGGA CCTAACGGTT CTATCCGAAA CGAGGAAGAG TTTTCTCACG
GTTCCAACAA TGGCTTGAAA AAGGCTATTG ATTTCTGCGA GGAAGTGAAG GAAAAACATC CTAAGATTAC GTACGCAGAT
CTTTACCAGC TTGCTGGTGT TGTTGCAGTT GAGGTTACGG GGGGTCCCAC AATTGATTTT GTCCCTGGTA GAAAGGATTC
AAAAGTATCC CCTAAAGAAG GGCGGCTTCC TGATGCTAAA CAAGGTGTTT CACATCTCCG TAATATCTTC TATCGAATGG
GCTTGACTGA TCGAGATATC GTTTCACTGT CTGGAGGGCA TACGCTGGGG AGAGCACATC CAGAGAGATC AGGGTTTGAT
GGACCTTGGA CGGAGGACCC TCTGAAGTTT GATAACTCTT ACTTTGTGGA ACTTTTGAAA GGCGAGTATA TTGGGCTGCT
CAAACTTCCA ACAGACAAGG CTTTGTTGGA GGACCCTGAA TTTCGCCGTT ACGTTGAACT ATATGCGAAG GACGAGGATG
CATTTTTCAG GGATTATGCT GAAGCGCATA AGAAACTTTC AGAGCTAGGC TTTGTGCCAA GTTCAAAGGC GATTTCTATT
AAGGATGGGA CCGTACTGGC ACAAGGTGCT GTAGGAGTTG TAGTTACTGC GGCGGTGGTG ATCCTCAGTT ACTTGTATGA
AGTTCGCAAA AGGGGGAAGT AGACCGGGAC ATGTTCATCT CTCTTGGATG TTACATTTGG TTGACCCCGA CCCATTATGT
GCAAAATAGG GTTCATTTTT GCAGCTTCAG TTTCTGTTTA CTTGGCACCA ATAAAGAATA ATGCCACAGC CACGCTGACT
TTTATATGAA TAGACTAAAA ATATCCTGAA TACTCAATTT AAGCGCAACG TCATAATACG TAAATACAAA AAATTTAGCA
TTCCCAGTTA CGTGTTATTC ACTGTAAGGT TAGAGGAGGG TAGACATGCT CATTTGCTCA AATCAAAAAG GCTAATTTGT
CATGCATGTT TCGTGCCAGG AAATCAGAAT TACAAAAACT GGTACTGCGC TAGCTGAGAT TTAAGAAAAT CATGCATTAA
GTTAGTCTGC AGTAGACTAG 

>Vigan.06G234400.01
ATGGCGTTGC CGGTGGTGGT GGACTCAGAG TACCTCAAGG AGGTCGACAA GGCTCGCCGC GATCTCCGTG CACTAATCGC
TAACAGGAAC TGCGCTCCTC TCATGCTTCG GCTAGCCTGG CACGATGCCG GCACTTACGA TGCCAAATCC AAGACCGGTG
GACCTAACGG TTCTATCCGA AACGAGGAAG AGTTTTCTCA CGGTTCCAAC AATGGCTTGA AAAAGGCTAT TGATTTCTGC
GAGGAAGTGA AGGAAAAACA TCCTAAGATT ACGTACGCAG ATCTTTACCA GCTTGCTGGT GTTGTTGCAG TTGAGGTTAC
GGGGGGTCCC ACAATTGATT TTGTCCCTGG TAGAAAGGAT TCAAAAGTAT CCCCTAAAGA AGGGCGGCTT CCTGATGCTA
AACAAGGTGT TTCACATCTC CGTAATATCT TCTATCGAAT GGGCTTGACT GATCGAGATA TCGTTTCACT GTCTGGAGGG
CATACGCTGG GGAGAGCACA TCCAGAGAGA TCAGGGTTTG ATGGACCTTG GACGGAGGAC CCTCTGAAGT TTGATAACTC
TTACTTTGTG GAACTTTTGA AAGGCGAGTA TATTGGGCTG CTCAAACTTC CAACAGACAA GGCTTTGTTG GAGGACCCTG
AATTTCGCCG TTACGTTGAA CTATATGCGA AGGACGAGGA TGCATTTTTC AGGGATTATG CTGAAGCGCA TAAGAAACTT
TCAGAGCTAG GCTTTGTGCC AAGTTCAAAG GCGATTTCTA TTAAGGATGG GACCGTACTG GCACAAGGTG CTGTAGGAGT
TGTAGTTACT GCGGCGGTGG TGATCCTCAG TTACTTGTAT GAAGTTCGCA AAAGGGGGAA GTAG

>Vigan.06G234400.01
MALPVVVDSE YLKEVDKARR DLRALIANRN CAPLMLRLAW HDAGTYDAKS KTGGPNGSIR NEEEFSHGSN NGLKKAIDFC
EEVKEKHPKI TYADLYQLAG VVAVEVTGGP TIDFVPGRKD SKVSPKEGRL PDAKQGVSHL RNIFYRMGLT DRDIVSLSGG
HTLGRAHPER SGFDGPWTED PLKFDNSYFV ELLKGEYIGL LKLPTDKALL EDPEFRRYVE LYAKDEDAFF RDYAEAHKKL
SELGFVPSSK AISIKDGTVL AQGAVGVVVT AAVVILSYLY EVRKRGK*