GBrowse Details

Vigan.06G217600.01

Basic Information:
Name: Vigan.06G217600.01
Multiple alignment
Variant Information
Position: Chr06:35004105..35007421 (+ strand)
Length: 3317
Functional Information:
Description: Similar to Uncharacterized protein. [I1LJI7, Glycine max]
InterPro: Uncharacterised protein family UPF0497, trans-membrane plant (IPR006702)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:20.26,3.71,2.66,4.50,0.03,0.30,0.17,3.50
Automatic updates:
Name: NM_001252776 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CASP-like protein At1g49405-like (LOC100791311), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:35004105..35005362 (+ strand)
Length: 1258
Type: five_prime_UTR
Position: Chr06:35005363..35005493 (+ strand)
Length: 131
Type: CDS
Position: Chr06:35006504..35006636 (+ strand)
Length: 133
Type: CDS
Position: Chr06:35006728..35006922 (+ strand)
Length: 195
Type: CDS
Position: Chr06:35006923..35007421 (+ strand)
Length: 499
Type: three_prime_UTR

>Vigan.06G217600.01 class=Sequence position=Chr06:35004105..35007421 (+ strand)
TGGTAGATAT AATTATAGAT GTTTACATGA CGTGAAGGGT AGATAAATAG TTGACGGTTG AACTTGTGTG AGAGATGGAA
CGTTCTTGTT TTCACTGTAG AGGTTCCAAC ATTCAACCAA ATCAAAATGA AAGTAACTCA GTTGCAGTTA AGAGAAATTT
GAAGGCTCAA GTCTCCTTGC CCATATTGAG ATGTTGCACA GTTTTGTACC CTTTTGTTCA TCACCTAAAA AATAAAGTTT
CAGAAGTTAT GAAGCTAAAG TGAGACTAAA GAGAGTGAGT TGATCAGAAA AAGGTGCAGA ATTGAGTGTC CTTATAGGTT
TTTGTCCCAT CATTCTAAGT TACTCCACTA GCACTTGCAT CACATGATAA CATCATTTTC CAATGAAAAT GGGGTCAATA
CTAGTTTGAC AATTGGCGAA TCTGAGTTCC CTCTTTAGAA AGCACTGGCA CACAACCTGC CGCTAGTCAT TCCATTCATA
AATTCATTTT GGACACAGAT GCATCTCTTG TCTTGTCTGG TCCCTATTAA GAAAGAGTAA CGACCGTTCA AAACCATACA
AAATAATATA ACAAAATTTC CCAATGGAAA AAAGAACCAA ATCTTTAAGC AAAAAAACGC ATCTTTTGAT AACCCTTTTG
AATGTATCTC AAAATATTTT ACACTCTTCT TTCCATCATG ATGAGGTCAG AGTGGAGAAG GCAAAAACGT TTCTGTTCTG
CTATAAACAG AAGAGTTAGA ACTCATCCCA TTTGAAGTCC TGTCAAAGGA GCCTCAAATA TTTAGCGGCA CCGAATGGCG
AAGTAGCCCA TGTGTCAACA CCATCATCTT AATTAAAACA ACAGCATTAT TGTTCAATCA GCAGACAGAA AAAGTCTATG
CACATAGTCC AAACTTGCAC CTAACATAAA CTTGCCTAAA TTCTATCTTG AAGTTTCTAT TTGGAAGAGA AAGGTTTTCG
TTGTCATAAA GGGCAACCCA CGTGCTTATT ACATATTGGA TTTTCTTTCT TTTCTTCCTT GGCTTGTTTC AATCTCTACA
CAAGGGGAGA TAAGGGGCCA AGAATTTCAT ACAAGCTTGG GAGTTCTTAT CTACTTTAGA GAATGTTTTT GTACCACTAG
ATGGTTTCAG CTGAAAGAAG TAAACAATGA TCACAAGACG AGTTTGGTAT GATCTTGAAG AACAAATATG ATAGAAGAAT
ATCGCAAGGA AAGAGGAAAG TCCATAAATA GATTTTGTAC ATCCCATGTA CTGAGTTAAT GGATGAAGTA CCTGGCTCCT
TGGGCACAAC CGCTAGCTTC AGTCTGAGAA TGGGCCAGAC CATGTTCTCA TCTGCTTCCC TTCTCTTCAT GTCTTTTGGG
GTTGAATTCT ACAGCTACAC GGCTTTCTGG TACCTTTCTT TTATCTTTTA CTTGCACCCC TCACTTTGCT GATATTCTGA
TCTCAAAGGG TAGTTGATGT TTGCCATTAT GTTGCTCTGG TTTTTCTGGC TTGATTTTCT AAAAGGATTT CTCCCTGACA
TTCTGCATGC AATGTTTTAG CTTCTCTACC CTTTTCTTCC ATATATATGT TATTCTATAT AATCTAGCAC TGAGTTTGAG
CTCTAGAATA GAAAAAGGTG ATTTATTTGA GGCCAAGGAT GATACTGGTG AATATTTTAC AAATGATTAA CTCCTAAGTA
ATGTCCCTCT AGGATTAGAC AATTCAACTC ATTAAGAACA GGTAGCTTCA CTGTAGCTAT GTCATTTCTC TATAGACTGG
CTGAGAGGAT TCAATTATTT ACCTTTAAAT TTCCTACACC CTTTGACTGT TGTTTTGCTC CCAGCGATGA AACAGAAGGA
TGCTGCATTT CATTGTTCTA TTGACATTTC TTTAATACGA ACAATTTGGT AATAAAAACC TGTATTCTAT AGAATGATCT
AATGAATTAG CAGAAAAACT CTGTTCACAT ATAGTGTCAA GAACTTGTCA GTACAATGAA TTGGCATCAG AGTGATCTTT
GTTGATCCAA TTAGTGGGAA ACAACACAAG AGTGTAGGAC TCTATATGTC TAAAATTTAT TCTGAAATTA TAATAATGTT
TTCTCCTGGA GAGCAAATAA TTTCAGCTAG AAAGTCGTTT TATTAGTTTT TTACGGAAGG TTTTTGACTA CAAAATCCTA
CGTTTTACTG GAATTACTTT TTCTCGTCTC TCCACTTACA CAACAAAGCC GCAGTTCAGG TTGTCAGCAC ATTTGAACCT
TTTATTGATA ATGTTCTCTT ATATCTGTTA AATATCCTGC TTCTGTTATT TGCATCACTT AAATGCTAGG GGCTGAGCAG
ACATCATTAG TACAATCGAA TTTGTTGATT CTTCTGTTAA TCAACTGGTT TATTTTTGTG TTTACTATCC ATGTCCAAGC
TATTTGGTTA CAATTATGGG GTTGGTCATA CCGTGGAGTT TCACATTAGC ACTAGTAGAT GGATATTCGA TTCTGCTCAA
ATGCCCCATT CGTCAACCAG GAATTCTGCT GATTATTGTT GTGGGAGATT GGGTATGTAG TTTCTGATCC AGGTGCTATG
TATCAGTTGA TGTAGATAGA TAATGGCAAC CGTCTGTTCG TGACTTCAGT TCTTTTGCTA TAGGTACTAT CAACCCTCAC
ACTAGCAGCA GCTTCCTCAA CAGCTAGTGT TGTGGATCTT CTGCTCAACA CTCACGGCTC TTTTTGCCCT CCAAAGCTCT
GCAGCAGGTA CAGGATATCT GCAATTATGG CCTTCTTGTC ATGGTTTCTA TCTTTGGCAT CCTCTCTATT TAACCTTTGG
CTATTACCCT CTTTGTGATT CTCATTTACT TCCCCTGTAG AATCATTAGA TTAATCATTA TTTGTAATGC AATTTCCTCT
GTCATGTAAA ATACCCGGTG CAGGATTTTA AATGATGTAT ATTTATAACT ACAAAAGTTT GTTTGGAGAA GTTCCATAGA
AGCTAAATGT TAAACTTTAC ACAGGAGCAA AGTACCCCTT GAGTCCAATG AATCTCACGC TCAACTTCAT AGCAGATACA
AGATTGTAAA ATACTAACAT GTAAAGATGG CACACTGCAG TTCTGCTGTT TGGTAATTCC CTTCCCCGTA CAGGAGTTGA
ACACTTATCA TGTATTTCAC CATCAACACT TGCCCCCGAG TCCTCTGGTG GCCTTGTTGA GAATTTGCGG TGATATACAG
AACCAACAAA CAAAATAAAC AGTTAAATTT TCGAAGTACA GCTTCATCCT GAACTGAAAC CAGATCACAA ATATGGCCTT
TCTTCTTCAT TACTTTTATA AAAACACCAA AGCAAGC

>Vigan.06G217600.01
TGGTAGATAT AATTATAGAT GTTTACATGA CGTGAAGGGT AGATAAATAG TTGACGGTTG AACTTGTGTG AGAGATGGAA
CGTTCTTGTT TTCACTGTAG AGGTTCCAAC ATTCAACCAA ATCAAAATGA AAGTAACTCA GTTGCAGTTA AGAGAAATTT
GAAGGCTCAA GTCTCCTTGC CCATATTGAG ATGTTGCACA GTTTTGTACC CTTTTGTTCA TCACCTAAAA AATAAAGTTT
CAGAAGTTAT GAAGCTAAAG TGAGACTAAA GAGAGTGAGT TGATCAGAAA AAGGTGCAGA ATTGAGTGTC CTTATAGGTT
TTTGTCCCAT CATTCTAAGT TACTCCACTA GCACTTGCAT CACATGATAA CATCATTTTC CAATGAAAAT GGGGTCAATA
CTAGTTTGAC AATTGGCGAA TCTGAGTTCC CTCTTTAGAA AGCACTGGCA CACAACCTGC CGCTAGTCAT TCCATTCATA
AATTCATTTT GGACACAGAT GCATCTCTTG TCTTGTCTGG TCCCTATTAA GAAAGAGTAA CGACCGTTCA AAACCATACA
AAATAATATA ACAAAATTTC CCAATGGAAA AAAGAACCAA ATCTTTAAGC AAAAAAACGC ATCTTTTGAT AACCCTTTTG
AATGTATCTC AAAATATTTT ACACTCTTCT TTCCATCATG ATGAGGTCAG AGTGGAGAAG GCAAAAACGT TTCTGTTCTG
CTATAAACAG AAGAGTTAGA ACTCATCCCA TTTGAAGTCC TGTCAAAGGA GCCTCAAATA TTTAGCGGCA CCGAATGGCG
AAGTAGCCCA TGTGTCAACA CCATCATCTT AATTAAAACA ACAGCATTAT TGTTCAATCA GCAGACAGAA AAAGTCTATG
CACATAGTCC AAACTTGCAC CTAACATAAA CTTGCCTAAA TTCTATCTTG AAGTTTCTAT TTGGAAGAGA AAGGTTTTCG
TTGTCATAAA GGGCAACCCA CGTGCTTATT ACATATTGGA TTTTCTTTCT TTTCTTCCTT GGCTTGTTTC AATCTCTACA
CAAGGGGAGA TAAGGGGCCA AGAATTTCAT ACAAGCTTGG GAGTTCTTAT CTACTTTAGA GAATGTTTTT GTACCACTAG
ATGGTTTCAG CTGAAAGAAG TAAACAATGA TCACAAGACG AGTTTGGTAT GATCTTGAAG AACAAATATG ATAGAAGAAT
ATCGCAAGGA AAGAGGAAAG TCCATAAATA GATTTTGTAC ATCCCATGTA CTGAGTTAAT GGATGAAGTA CCTGGCTCCT
TGGGCACAAC CGCTAGCTTC AGTCTGAGAA TGGGCCAGAC CATGTTCTCA TCTGCTTCCC TTCTCTTCAT GTCTTTTGGG
GTTGAATTCT ACAGCTACAC GGCTTTCTGC TATTTGGTTA CAATTATGGG GTTGGTCATA CCGTGGAGTT TCACATTAGC
ACTAGTAGAT GGATATTCGA TTCTGCTCAA ATGCCCCATT CGTCAACCAG GAATTCTGCT GATTATTGTT GTGGGAGATT
GGGTACTATC AACCCTCACA CTAGCAGCAG CTTCCTCAAC AGCTAGTGTT GTGGATCTTC TGCTCAACAC TCACGGCTCT
TTTTGCCCTC CAAAGCTCTG CAGCAGGTAC AGGATATCTG CAATTATGGC CTTCTTGTCA TGGTTTCTAT CTTTGGCATC
CTCTCTATTT AACCTTTGGC TATTACCCTC TTTGTGATTC TCATTTACTT CCCCTGTAGA ATCATTAGAT TAATCATTAT
TTGTAATGCA ATTTCCTCTG TCATGTAAAA TACCCGGTGC AGGATTTTAA ATGATGTATA TTTATAACTA CAAAAGTTTG
TTTGGAGAAG TTCCATAGAA GCTAAATGTT AAACTTTACA CAGGAGCAAA GTACCCCTTG AGTCCAATGA ATCTCACGCT
CAACTTCATA GCAGATACAA GATTGTAAAA TACTAACATG TAAAGATGGC ACACTGCAGT TCTGCTGTTT GGTAATTCCC
TTCCCCGTAC AGGAGTTGAA CACTTATCAT GTATTTCACC ATCAACACTT GCCCCCGAGT CCTCTGGTGG CCTTGTTGAG
AATTTGCGGT GATATACAGA ACCAACAAAC AAAATAAACA GTTAAATTTT CGAAGTACAG CTTCATCCTG AACTGAAACC
AGATCACAAA TATGGCCTTT CTTCTTCATT ACTTTTATAA AAACACCAAA GCAAGC

>Vigan.06G217600.01
ATGGATGAAG TACCTGGCTC CTTGGGCACA ACCGCTAGCT TCAGTCTGAG AATGGGCCAG ACCATGTTCT CATCTGCTTC
CCTTCTCTTC ATGTCTTTTG GGGTTGAATT CTACAGCTAC ACGGCTTTCT GCTATTTGGT TACAATTATG GGGTTGGTCA
TACCGTGGAG TTTCACATTA GCACTAGTAG ATGGATATTC GATTCTGCTC AAATGCCCCA TTCGTCAACC AGGAATTCTG
CTGATTATTG TTGTGGGAGA TTGGGTACTA TCAACCCTCA CACTAGCAGC AGCTTCCTCA ACAGCTAGTG TTGTGGATCT
TCTGCTCAAC ACTCACGGCT CTTTTTGCCC TCCAAAGCTC TGCAGCAGGT ACAGGATATC TGCAATTATG GCCTTCTTGT
CATGGTTTCT ATCTTTGGCA TCCTCTCTAT TTAACCTTTG GCTATTACCC TCTTTGTGA

>Vigan.06G217600.01
MDEVPGSLGT TASFSLRMGQ TMFSSASLLF MSFGVEFYSY TAFCYLVTIM GLVIPWSFTL ALVDGYSILL KCPIRQPGIL
LIIVVGDWVL STLTLAAASS TASVVDLLLN THGSFCPPKL CSRYRISAIM AFLSWFLSLA SSLFNLWLLP SL*