GBrowse Details

Vigan.06G204200.01

Basic Information:
Name: Vigan.06G204200.01
Multiple alignment
Variant Information
Position: Chr06:33944670..33946520 (- strand)
Length: 1851
Functional Information:
Description: Similar to Uncharacterized protein. [V4SCF6, Citrus clementina.]
GO: Biological Process: response to stress (GO:0006950)
InterPro: Universal stress protein A (IPR006015)
UspA (IPR006016)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:199.33,103.11,147.11,104.61,108.71,275.98,226.71,160.68
Automatic updates:
Name: NM_001248261 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499728 (LOC100499728), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306505 (LOC100306505), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33944670..33945083 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr06:33945084..33945174 (- strand)
Length: 91
Type: CDS
Position: Chr06:33945734..33945852 (- strand)
Length: 119
Type: CDS
Position: Chr06:33946009..33946118 (- strand)
Length: 110
Type: CDS
Position: Chr06:33946221..33946395 (- strand)
Length: 175
Type: CDS
Position: Chr06:33946396..33946520 (- strand)
Length: 125
Type: five_prime_UTR

>Vigan.06G204200.01 class=Sequence position=Chr06:33944670..33946520 (- strand)
GACAAAAGAT AAACGTTTTC ATAAATTGGA CAGTTCCTCC CAACTGTGAA GCTCCAACAA ACATTTCGGA AGCTCAAAGG
TAAACAGTGA ATTAACAATA AAAAACACCA GAATTTGTTG AAACGATGAG CAGTGAAAGG AGAATTGGGG TGGCTTTGGA
TTTCTCTAAG GGAAGTAAGA TCGCTCTCAA ATGGGCTATT GATAATCTTC TCCGCAACGG CGACACACTA TTCATCATCC
ACATCAAGCA CGGCCAAGGC AGTGAATCCC GAAATCTTCT ATGGTCCACC ACTGGATCAC GTAAGCTTCT ATTTTGATTC
TACCCTTATA ATAAATTCAA TTAATTTTTC TAGAATTTTG ATCTTTGAAT TCTGATTGTG GTGTGGTGTG ATGTGGGTGA
AGCACTGATT CCGTTGTCGG AGTTTCGTGA TAAGGATGTG ATGCATCATT ATGAGGTGGA TTCTGATGCC GAGGTGTTGG
ACCTGCTTGA CACCGCTTCT AAGCAGAAAC AGGTTTTTAC TGTTTAACTT TACTAATTAA TTTCTCTGCT AGTGTACTAC
CTTGTCGTGT GTTGTTGGAT TGAGTTCTTA GGTTTTGATT TGACTTTGTT AGGGTTGTTC TAGTCATACG TTGATTGCTG
AATGTGTTTG AATTTTCCTT GGATACAGGT GGCTGTGGTT GCAAAGCTGT ACTGGGGCGA TGCAAGGGAG AAAATTTGTG
AAGCTGTTGG GGATTTGAAG CTTCACTCTT TGGTCATGGG TAGCAGAGGC TTAGGTGCCA TACAGAGGTG GTTTTTTTTC
CCCTCTAGTT TAGAGATAAG TGCATGCAAA TAATGATTTA ATTGTTTAAA TTAAGTGCAG TTTCTTAGAT TCATTTACTG
TTGATCTCTA GTTAGAATTT GAAATGTCAC CTTTATAATA CATGTTTACC TTTAATGCAT GTCTTTATTA CATTAGTTAA
TGAAATGAAA TCCAAATTGT AATGGGGGAT CAACACTAAT GAAATAAAAG CTCCCAAAGA AGTGCATCGA TGTTTTTGTC
CCATCTTAAA TGCATCTTGA CTCATGTTTT GGCTCTAGTG GTAGTCTTGA GTCAACTCCA AAAATAAGGG GCTTCATAGA
TTTGTCGACA CCTAATGTTC TGGAGATAGT TTTTGGATGA AAAGAAAGAG GGAGGATCTA TTTTTTTTGT CTTTAACTAC
AAATAGTATA AATATTCCCA TTGAAAAAAT GTATTCCCAA ACATATAAAA CAGAAAACAA AACATACTTA CAAATTTATA
AGTTGTATTG ATGAACAGAA CAGTGATGAT CTAATGATGT TGTTTTTCAA AATTGGTTGA TCGTAGGGTG TTGCTGGGGA
GTGTGACCAA CTATGTCACC ATAAATGCAA GTTGCCCTAT AACGATTGTG AAAGACTCTG CCCCTTCCAC TATCTGATAT
GCTACTGAAT TTGATTGGTC TTGCAATCGG TTGTTCCATC TTCATCAGTG ACCAGACTGT GTTTTCCTCC TTCGTCTTAC
ACGTGTAGTT GGGATTTTGA ACACACTTGA AGTTAAGGAT TCGCCAAGCA AAATGTCTAG TGTTAGCACT CTCTTTTAAG
TGCTTAGTTA TGACCAAAAT TGTGCTTATA AATAAGCTTT GTGTTGGATC TGTACTGAAC TTACAAGTGC AAATGATGAT
GTGGTGGTGT TAAATGTTTG ATATTCTATT TGATTCTTGC TGTCTTTGCT GCATCACAAT GATGTGTTAG TGGTTTTTAA
TATGGTAGCT TTCTTTAACT GCATATTCAC CCCTACTTTT GTCAATCAAC TTGAACACAG TTATTCATTC TGTTTTTACC
TAAGAATTCA A

>Vigan.06G204200.01
GACAAAAGAT AAACGTTTTC ATAAATTGGA CAGTTCCTCC CAACTGTGAA GCTCCAACAA ACATTTCGGA AGCTCAAAGG
TAAACAGTGA ATTAACAATA AAAAACACCA GAATTTGTTG AAACGATGAG CAGTGAAAGG AGAATTGGGG TGGCTTTGGA
TTTCTCTAAG GGAAGTAAGA TCGCTCTCAA ATGGGCTATT GATAATCTTC TCCGCAACGG CGACACACTA TTCATCATCC
ACATCAAGCA CGGCCAAGGC AGTGAATCCC GAAATCTTCT ATGGTCCACC ACTGGATCAC CACTGATTCC GTTGTCGGAG
TTTCGTGATA AGGATGTGAT GCATCATTAT GAGGTGGATT CTGATGCCGA GGTGTTGGAC CTGCTTGACA CCGCTTCTAA
GCAGAAACAG GTGGCTGTGG TTGCAAAGCT GTACTGGGGC GATGCAAGGG AGAAAATTTG TGAAGCTGTT GGGGATTTGA
AGCTTCACTC TTTGGTCATG GGTAGCAGAG GCTTAGGTGC CATACAGAGG GTGTTGCTGG GGAGTGTGAC CAACTATGTC
ACCATAAATG CAAGTTGCCC TATAACGATT GTGAAAGACT CTGCCCCTTC CACTATCTGA TATGCTACTG AATTTGATTG
GTCTTGCAAT CGGTTGTTCC ATCTTCATCA GTGACCAGAC TGTGTTTTCC TCCTTCGTCT TACACGTGTA GTTGGGATTT
TGAACACACT TGAAGTTAAG GATTCGCCAA GCAAAATGTC TAGTGTTAGC ACTCTCTTTT AAGTGCTTAG TTATGACCAA
AATTGTGCTT ATAAATAAGC TTTGTGTTGG ATCTGTACTG AACTTACAAG TGCAAATGAT GATGTGGTGG TGTTAAATGT
TTGATATTCT ATTTGATTCT TGCTGTCTTT GCTGCATCAC AATGATGTGT TAGTGGTTTT TAATATGGTA GCTTTCTTTA
ACTGCATATT CACCCCTACT TTTGTCAATC AACTTGAACA CAGTTATTCA TTCTGTTTTT ACCTAAGAAT TCAA

>Vigan.06G204200.01
ATGAGCAGTG AAAGGAGAAT TGGGGTGGCT TTGGATTTCT CTAAGGGAAG TAAGATCGCT CTCAAATGGG CTATTGATAA
TCTTCTCCGC AACGGCGACA CACTATTCAT CATCCACATC AAGCACGGCC AAGGCAGTGA ATCCCGAAAT CTTCTATGGT
CCACCACTGG ATCACCACTG ATTCCGTTGT CGGAGTTTCG TGATAAGGAT GTGATGCATC ATTATGAGGT GGATTCTGAT
GCCGAGGTGT TGGACCTGCT TGACACCGCT TCTAAGCAGA AACAGGTGGC TGTGGTTGCA AAGCTGTACT GGGGCGATGC
AAGGGAGAAA ATTTGTGAAG CTGTTGGGGA TTTGAAGCTT CACTCTTTGG TCATGGGTAG CAGAGGCTTA GGTGCCATAC
AGAGGGTGTT GCTGGGGAGT GTGACCAACT ATGTCACCAT AAATGCAAGT TGCCCTATAA CGATTGTGAA AGACTCTGCC
CCTTCCACTA TCTGA

>Vigan.06G204200.01
MSSERRIGVA LDFSKGSKIA LKWAIDNLLR NGDTLFIIHI KHGQGSESRN LLWSTTGSPL IPLSEFRDKD VMHHYEVDSD
AEVLDLLDTA SKQKQVAVVA KLYWGDAREK ICEAVGDLKL HSLVMGSRGL GAIQRVLLGS VTNYVTINAS CPITIVKDSA
PSTI*