GBrowse Details

Vigan.06G202200.01

Basic Information:
Name: Vigan.06G202200.01
Multiple alignment
Variant Information
Position: Chr06:33786725..33790697 (- strand)
Length: 3973
Functional Information:
Description: Similar to E3 ubiquitin-protein ligase SDIR1-like. [XP_006592188.1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, RING-type (IPR001841)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:54.92,49.12,4.60,3.47,3.95,25.70,0.89,8.88
Automatic updates:
Name: NM_001252856 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max E3 ubiquitin-protein ligase SDIR1-like (LOC100805406), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33786725..33786807 (- strand)
Length: 83
Type: three_prime_UTR
Position: Chr06:33786808..33786933 (- strand)
Length: 126
Type: CDS
Position: Chr06:33787680..33787805 (- strand)
Length: 126
Type: CDS
Position: Chr06:33788284..33788326 (- strand)
Length: 43
Type: CDS
Position: Chr06:33789012..33789126 (- strand)
Length: 115
Type: CDS
Position: Chr06:33789267..33789495 (- strand)
Length: 229
Type: CDS
Position: Chr06:33789601..33789653 (- strand)
Length: 53
Type: CDS
Position: Chr06:33789737..33789791 (- strand)
Length: 55
Type: CDS
Position: Chr06:33789905..33789982 (- strand)
Length: 78
Type: CDS
Position: Chr06:33789983..33790697 (- strand)
Length: 715
Type: five_prime_UTR

>Vigan.06G202200.01 class=Sequence position=Chr06:33786725..33790697 (- strand)
GGGAGCGTTT TGTGTGGGAA TTGAGTAAGT TGTTAAATAC ATGGGAAGGG GGAGTTTTTT TTCACTCTTT AAGTTATTAT
GTATACCTAC ATTTCTTTTT TGCAATGTTG GACCGGCCAT GATGTACAAT TCATTATTTC TTGTACTGAA TTTCATAAAA
CTGTTCTGAC ACTTACAATC TCCTGAGCTA ATGAGACATA AACCTATATA GGTCAATGGC TTTAGCTTTG GCCTCAAAAA
CAAAAATTAT TCACCATTGT TTTGACAAGA GAAAAGAATG GCCTATCCCG CTATCTTTCA GAAGTTATGA ATCTAATCTT
CAAGAGGTGG ATCTCGTTAG CTTCAAATTG TAGTTTTGCA AGCAATGCAC CTTGATGAGC CTAATGATCT ATTTCTCTGT
TTTGCAAAAA AATTGTCTAG ATAAGGTACT GGAATGTGAG ATGTGATTTA TCATCTAATC TTCAAACAAT AAAAATTATC
TTTGCTGCCA ATAACCATCA ATCTATAAAA ATGTGTTTAC TGCGACTAAT TATTCAGTAT TCACAAATTC ATGGGTGGAA
TTATGTGTGC TTGTTTGATT CTTGAATGAC TTAATATATG TTTATTCTTT CATAATCAGT TTACAAATTT GTGTTATTGT
AACGTTTGAA CATCGATTAA TAGCTCGCAG GTAGTGTTGT CGTGAATTGT TGGCTGAGCG AGCTCCTTTG CAATCATGAG
TTTTGTCTTC CGAGGGAGTA GGGGAGATAT TGAAAGTGGA TTTTCAGAAT ATGTTCCTGA AAGAACCTTG ATGGTACGTT
TGATGTGTGT GAATGTCAGT CTGTGTGCTA GTTTTCGCCT GCTAAACTCA AATTGTACAT AATTGGACTG TAATTCTCAT
TCTCTTTTCC TACTTCTTCC TATCAGAGGG TTCATCCAGC TCGCCCAGTT AATGGCAATT CTTTAGCTTT TCTTATCACA
GGTGATGTCT TCTCAGCTGT ATATAATGCT TTACTTCTTC ATAAAGCACA TTCTTAATCT GTATCTGACA TGCTTATTTG
CCAGTTATTT TGATATTCAT GATATTAAAC TCCCCTCAAA TGCTACATCA TTTTTTGGTA AGTAATCACT TAAAAAAATG
CTAAATTTGA TGTACTCACT GCCGTGCAAG TTACTTATCT GCATTGAAGT AAGAAATTAA TTCTTGGCAC ATAACATTTC
AGCTCTGGGT TGTACTGGCT ATCTTTGTGA TGGCTACAAG TCTGAGGATG TATGCAACTT GTCAACAACT TCAGGCACAG
GCTAGGGCTC ATGCTGCAGC AGCCTCTGGG TTGCTTGGCC ATACTGAACT CCGTCTTCAC ATGCCACCAT CGATTGCAAT
TGCAACCAGA GGAAGACTGC AGGGACTTAG ACTTCAGCTT GCACTTCTTG ACCGTGAATT TGATGAGCTA GGTATTATGT
TTATGAGTTG TACCTTTGAA TGTGTGTTTT AATATCTTTT CTTAGTTGAA AGGCCCCAAG ATGGATGCTG AAAGCAGATG
AAAGCTTATA TTGCTGTGTT TTGTTAAATT CTTTTCTTGA TTTTGTTGCA GATTATGATA CTTTGAGAGC TCTTGACACT
GATACTGCTC CTAGTACCCA TTCAATGACT GAGGAAGAGA TAAATGCCTT GCCTATTCAC ACATATAAAA TTCCAGTCCC
ACCAAAGTGA GTTGTAATGG TTTCTTAAAA AATAAATAAA TTGATAGTGA TAATGAATCA GAAGAAAGGC TAGCTGCATA
AGCTTGCATT TTTCCTTTCC TGAAGCTCAC TGTTTGGAGG GTCAGTGCAC CCTATTTTAA CTATTCTGTA GAAGGCACTG
ACTTCTGATA AGGATGGTTG AGTTTAAAGT CCACACTCCT TAGTATTTTG GTATAGAAAA CCATTGAATA TGGAGCATAA
ATCATGCTCC ATGGAGAAAT TGGCATGCTT CAGTGAAGCT GTTAAGGTTA GCTTTGCTAG AGGTGTACGG AGACCAGCAG
TTGTGACTCT AATTAAAAAA CCAAATAGTT GTTTGTTGCT AATAGTCATC CTACATTTGT GGTAAAATAG ATGTCATCTA
CAAGACTCAT AATCACTGGT AGTAGAATGA GGATCTTGAA GGGATTATTT TCACTCATTG CGTACTCGAT GACCATTTGT
GAAAAGAGGC TGTGCTGTTA CATCATTTCT TAGGAATCGT TAGTTAAAAT TATAGAGAAA AATACATTTG GTAGTCTTTT
TTTTATTTAT TTATGTATTT TAGGATTCTC AAGCCAGTTT AACTGGTTAT AAGACTAGTT TCCTCCTTTG CGTGCATTTG
CATTTATGTA AAGTTCTAAA CCATAATAAA TAATCTGATT TCTGTTAACA GGGATGGCTC AGCCGGTCTG GCATCCTCTT
CAGGTGCAGC TGAGGTAAAC ATATGTTAAC TGTCTCTGCT TTTGGTTTGT TTACCTTTTC TAGCCTAGGT TGTCAGGTCA
TTGTATTTTA GGGTTACAAT GGTGTAAATG TGTTGCCTGG TTTTACGCTT GGTTGTTAGT TTTGTATACT ACTGGTGGTC
TATATTGCTG TTAATGCCTC TCATAAGTAC TTTAGACAAT GCCCCAAGAT ATAGATAGCA AACTATTCGA TAATTGGCCC
TAATATGATG TTCTATTCAT TCTTCATGGT ATGCTTTTGA AGAAAAGATA TATATATATA TATATATATA TATATATATA
TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATATGATTC TTTTAATTCA
AGATGTTTGA AGAAATTGCC CCCACTTGAT GGCTTCCATA CTTATTCCTG GGAGGGAACA GTTTTTAGTG TCTTTGTTTA
ATGGTCAATC AGATTAAACA AGAATCTGGA GGAACAGAGG CAGGTATCAG AGGCTCAGAA GATGAGCTGA CATGTACTAT
ATGCTTGGAC CAAGTCAAGA GGGGGGAGCT TGTTCGTAGC TTACCATGCT TGCATCAGGT TTGATCACCG CCTTCCTTTT
CCTTTTTTCG TTGTTTTTCA AATTATTCGG CCCTAGTGGA AACTAGTACT TATCTCTCAT ATTATCAGAT TTATTTTGTG
ATAATCATTA GCCTTCTTAG TTTTCTCGTT ATACCATTCT AGCAAATCCA TTCGAATTAA AGCATACTGC TCATCTTTGT
CTGTATACTT AACTAATTCA CAATTATTCT AACTCTTTCA GTGAGGGTAT TTCAATCAAA GAAGACTGTT TTGTCGTAGT
AATTAGAGTA ATTTATACAT TTTAGAAGAT GCGTCATTAC CTTAAATGAT AAGAGAATTT GAAATGTGGG GAGGAACAAT
CAATATCTTG CCCATATCAA TTTTTTGTTT ACTAAACTGG ATTAATTTTT AAAATCTGTT ATTATTTGTT TCTGAACAAA
ACTTCAGACT AATACAGTAG GTGCTCTTAG TATTATTTTG GTATTAAAAT TCGAGTTTTT CTTTGATAAC TAGAACCAAC
TAATGCCAAG TTTTATTCTT CATATTGTCA TTGATATTAG ACTCTAACTT TATTTGAAAA ATAAAACCTA AGGCATCAAA
GACACTGCAC CTCAATCTTT TATTTTGTTT GATTAAAGCA TGATGGCTGT CAAGTAACTT CTGTTGCAAC TTATTCCTCC
TTCACAGTGG GTGCGTGTGT GCATGTGTGG GTGCGTGTGC GTGTGTATCA TAAATGGCTT ATTTTCTTTT TTCTTTTTGT
CTAGTTTCAT GCTAACTGCA TTGATCCTTG GCTCCAGCAA CAAGGGACAT GTCCTGTGTG CAAATTAAGG ATAGGGTCGG
GAAGTGGGGG AACCAGGGAG AGCGAATCCG ATGGTTCAGA TATTGCGTAA TCTGATGGTT TAGATATGGC TGTAAAATGC
ATAATGTGAT GCCTTGAAGT GTATCTTCAT GGAAACAAGT ATATATATAT ATA

>Vigan.06G202200.01
GGGAGCGTTT TGTGTGGGAA TTGAGTAAGT TGTTAAATAC ATGGGAAGGG GGAGTTTTTT TTCACTCTTT AAGTTATTAT
GTATACCTAC ATTTCTTTTT TGCAATGTTG GACCGGCCAT GATGTACAAT TCATTATTTC TTGTACTGAA TTTCATAAAA
CTGTTCTGAC ACTTACAATC TCCTGAGCTA ATGAGACATA AACCTATATA GGTCAATGGC TTTAGCTTTG GCCTCAAAAA
CAAAAATTAT TCACCATTGT TTTGACAAGA GAAAAGAATG GCCTATCCCG CTATCTTTCA GAAGTTATGA ATCTAATCTT
CAAGAGGTGG ATCTCGTTAG CTTCAAATTG TAGTTTTGCA AGCAATGCAC CTTGATGAGC CTAATGATCT ATTTCTCTGT
TTTGCAAAAA AATTGTCTAG ATAAGGTACT GGAATGTGAG ATGTGATTTA TCATCTAATC TTCAAACAAT AAAAATTATC
TTTGCTGCCA ATAACCATCA ATCTATAAAA ATGTGTTTAC TGCGACTAAT TATTCAGTAT TCACAAATTC ATGGGTGGAA
TTATGTGTGC TTGTTTGATT CTTGAATGAC TTAATATATG TTTATTCTTT CATAATCAGT TTACAAATTT GTGTTATTGT
AACGTTTGAA CATCGATTAA TAGCTCGCAG GTAGTGTTGT CGTGAATTGT TGGCTGAGCG AGCTCCTTTG CAATCATGAG
TTTTGTCTTC CGAGGGAGTA GGGGAGATAT TGAAAGTGGA TTTTCAGAAT ATGTTCCTGA AAGAACCTTG ATGAGGGTTC
ATCCAGCTCG CCCAGTTAAT GGCAATTCTT TAGCTTTTCT TATCACAGTT ATTTTGATAT TCATGATATT AAACTCCCCT
CAAATGCTAC ATCATTTTTT GCTCTGGGTT GTACTGGCTA TCTTTGTGAT GGCTACAAGT CTGAGGATGT ATGCAACTTG
TCAACAACTT CAGGCACAGG CTAGGGCTCA TGCTGCAGCA GCCTCTGGGT TGCTTGGCCA TACTGAACTC CGTCTTCACA
TGCCACCATC GATTGCAATT GCAACCAGAG GAAGACTGCA GGGACTTAGA CTTCAGCTTG CACTTCTTGA CCGTGAATTT
GATGAGCTAG ATTATGATAC TTTGAGAGCT CTTGACACTG ATACTGCTCC TAGTACCCAT TCAATGACTG AGGAAGAGAT
AAATGCCTTG CCTATTCACA CATATAAAAT TCCAGTCCCA CCAAAGGATG GCTCAGCCGG TCTGGCATCC TCTTCAGGTG
CAGCTGAGAT TAAACAAGAA TCTGGAGGAA CAGAGGCAGG TATCAGAGGC TCAGAAGATG AGCTGACATG TACTATATGC
TTGGACCAAG TCAAGAGGGG GGAGCTTGTT CGTAGCTTAC CATGCTTGCA TCAGTTTCAT GCTAACTGCA TTGATCCTTG
GCTCCAGCAA CAAGGGACAT GTCCTGTGTG CAAATTAAGG ATAGGGTCGG GAAGTGGGGG AACCAGGGAG AGCGAATCCG
ATGGTTCAGA TATTGCGTAA TCTGATGGTT TAGATATGGC TGTAAAATGC ATAATGTGAT GCCTTGAAGT GTATCTTCAT
GGAAACAAGT ATATATATAT ATA

>Vigan.06G202200.01
ATGAGTTTTG TCTTCCGAGG GAGTAGGGGA GATATTGAAA GTGGATTTTC AGAATATGTT CCTGAAAGAA CCTTGATGAG
GGTTCATCCA GCTCGCCCAG TTAATGGCAA TTCTTTAGCT TTTCTTATCA CAGTTATTTT GATATTCATG ATATTAAACT
CCCCTCAAAT GCTACATCAT TTTTTGCTCT GGGTTGTACT GGCTATCTTT GTGATGGCTA CAAGTCTGAG GATGTATGCA
ACTTGTCAAC AACTTCAGGC ACAGGCTAGG GCTCATGCTG CAGCAGCCTC TGGGTTGCTT GGCCATACTG AACTCCGTCT
TCACATGCCA CCATCGATTG CAATTGCAAC CAGAGGAAGA CTGCAGGGAC TTAGACTTCA GCTTGCACTT CTTGACCGTG
AATTTGATGA GCTAGATTAT GATACTTTGA GAGCTCTTGA CACTGATACT GCTCCTAGTA CCCATTCAAT GACTGAGGAA
GAGATAAATG CCTTGCCTAT TCACACATAT AAAATTCCAG TCCCACCAAA GGATGGCTCA GCCGGTCTGG CATCCTCTTC
AGGTGCAGCT GAGATTAAAC AAGAATCTGG AGGAACAGAG GCAGGTATCA GAGGCTCAGA AGATGAGCTG ACATGTACTA
TATGCTTGGA CCAAGTCAAG AGGGGGGAGC TTGTTCGTAG CTTACCATGC TTGCATCAGT TTCATGCTAA CTGCATTGAT
CCTTGGCTCC AGCAACAAGG GACATGTCCT GTGTGCAAAT TAAGGATAGG GTCGGGAAGT GGGGGAACCA GGGAGAGCGA
ATCCGATGGT TCAGATATTG CGTAA

>Vigan.06G202200.01
MSFVFRGSRG DIESGFSEYV PERTLMRVHP ARPVNGNSLA FLITVILIFM ILNSPQMLHH FLLWVVLAIF VMATSLRMYA
TCQQLQAQAR AHAAAASGLL GHTELRLHMP PSIAIATRGR LQGLRLQLAL LDREFDELDY DTLRALDTDT APSTHSMTEE
EINALPIHTY KIPVPPKDGS AGLASSSGAA EIKQESGGTE AGIRGSEDEL TCTICLDQVK RGELVRSLPC LHQFHANCID
PWLQQQGTCP VCKLRIGSGS GGTRESESDG SDIA*