GBrowse Details

Vigan.06G200900.01

Basic Information:
Name: Vigan.06G200900.01
Multiple alignment
Variant Information
Position: Chr06:33702931..33705370 (- strand)
Length: 2440
Functional Information:
Description: Similar to Rab5-interacting family protein. [Q6NKV4, Arabidopsis thaliana]
InterPro: Rab5-interacting (IPR010742)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.89,9.87,12.74,9.65,20.77,15.86,25.39,11.72
Arabidopsis thaliana homolog: AT5G59410.1
Automatic updates:
Name: NM_001249327 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526939 (LOC100526939), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33702931..33703430 (- strand)
Length: 500
Type: three_prime_UTR
Position: Chr06:33703431..33703605 (- strand)
Length: 175
Type: CDS
Position: Chr06:33704547..33704650 (- strand)
Length: 104
Type: CDS
Position: Chr06:33704988..33705092 (- strand)
Length: 105
Type: CDS
Position: Chr06:33705093..33705370 (- strand)
Length: 278
Type: five_prime_UTR

>Vigan.06G200900.01 class=Sequence position=Chr06:33702931..33705370 (- strand)
AAGAAAAGTA ATCTCTTATT CGATTGTTGA GATTTTAGGG AAAAAAGAGA TAGATTCTGA GTTGTTACTG TTAATGTAGA
TGAAATGCCA GATCGAACAT TAACAACCAA TTTCTGCAAT TTTTAATTTG CATTCAGATT CTCTTTTCCT TTCTAATCCT
AAACCCTAAT TTTCTTTTTT CACCCTCCAG CGTCGCCGAA ATCCCGAATT CTGTGTGAAG TACTTCACTC CCGATTACTC
TTTGTTTTTG ATTCTTATTC GTTGCTTCTT CTTCCACTAT GAAAGAGGGT AAATCCGTTA ACCATCAACA GCCGCACCAG
AACGGTCACC TCTCGCCTTC AAAATTCGCC AAATTGTTTG ATCCCGAAGC TTCCTGGGAC AAGGTTTGTT CTTTCAGTAC
ATCCTTCATA GATCCATTCC TGTTGCCAAT TTGACCCGTA GATGTTTGCT GAAATTTACT TAAAATGAAA TAATTAATTT
TGAAGATGCT GAGCTGAATT ATTTGCCTGC CTGAAATTTG GGTTAGCAGA AAGTTGTGTT ACTGATACAA GACGTTCTCA
ACTTCTTTTA TAGTATGCGA TTGAAATTGA GAATAACGGT ATATAGTTTT GTAAGGATGT AAATTAGTGG TTATCACACG
TTTTTATGCT GTGTGCAGTC GTTACTTAAT TTTCCCAATG ATATGCTAAG AACCGTTGTC TGTGGGTTAC CTCCAAGCAG
GATCAGTTGG GAGACGTTTT GCATTGGATT AGACAAGGGC TTGGCCTTGT GTGTGGATTC CTTTGGGGTT CCATACCTTT
GGTTGGAGGC ATATGGTTCA TCCTGTAAGT GCTTTTTTTT TGTGCAATAT GTTTATCTTG TATTTGTACG TCGTTGAAGT
TCTAGATTGA GTATTAACTG AACCAGTTGA TATTGTGCTA TCCTTTGCAA ATAATGTTCA GGGTCTTGTT CATTAATTTT
GATTGTCTGC TGAATGGTGC CATGCATAGG ATCTAGAACC ATCCTGTGTA TATGTTTCGT TGTGGCACTA ATATTCTTGA
GTGGTCCTAT ATCATATTGG TTAGAGTTGG GATCAACTTT TGTTCACAAC TTTTATGAGA TAACGAGGTA CATAGTGGAG
AAGGAGACAA TGAGTGTTTT ATCAATGATT AATTGACCTA TGAGAAAGGA CTATGCAGAT CTATGGGAGG TGATATTTAA
CATGAATTTG GCAACAGGGT GGGTGTTATA CATATGAAGA TGTTGTTCTA GTTACAAAAC TTAGTAAATT GCATGTTTAT
GACTTTTGTT GTGCTACAAC AACATTAACT CTGGAAATAT AGGAGAGGGC CTCATCAGGG ATAACAATCT TTTGAAGTTG
TTATGCTAGT GTTTCTTGAT TTATGGTTTT ATCATTCACT GTGAAGATTT GTTTAGAAAA TCATCTAGTA ATCTATAGAA
ATAAATTTTT AACGAGCTTT AGGCTGCAGT AATGAAGTTA ACTTTTGTTG CAAAGATCAG TTATGCTTTG TGCAATCATC
AATTTTATAA ACAGAATAAT TGATGAATTG TTGCGACTTT CCTAAGTATA ATTTTTCTCT TACATGAATC GTTGATGTCA
TATTGATTTT TTAACATCAT ATAAGTTATC TTTGTCCAAA TTGAAATCCT TAGTTAGTAA TTTCTTCCAT TGCATTTTTG
TATCATTAAG AATGAAATGC GGGACCTAGT CTTAACACAC TAAAGTTCTA TGTTCATTTG TTAAATATTT TTCTGTGTCT
TGCAGCTTTT TGGCACTATC CACCGGGATT ATATATAGTT ATTATGCAGT AATATTAAAG GTTGACGAGG AAGAGTTTGG
TGGTCATGGA GCCCTCCTTC AAGAGGGGCT ATTTGCTTCT GTAACTCTTT TCCTGGTATT ATGCTCTGTT GTTCATTGCT
TTATATACTG TAGAAAATGA GGCTTTTATG GTTCGACAGT CTGACTTCAA CTTAATATAT GTGCAGCTTT CCTGGATTCT
AGTTTACAGT TTAGCACACT TCTGATTGGC TGGGCTTTGA AGATTTAACA GAGTAGAGAG ATTTACTTGA TTACATTTGC
CCAAATTGCA GTTATCTGCT TTACTTCTAT GTAAAATGTT CTAATTTTGC AATGCATGCA TGAACACTAG CTTCTGCATC
CCATGGTAAT TGCTGTTTTA GTCAAGCATT TCTAGTGTGA CACATTGTAT TACAACAAAT TTTGTGGATT GAACCCTGAA
ATAAAGTTGT TTGCAGACAA ATCGTGAAGG ACCATTTATC CTTGATGTTT ATGCCATAAA CATAGAATTC TCAAATAGTC
TCCCTCATTT TGTTGGGGTG TTAGTGTTGC TGGTAGGGGA TATATATTTT ATTGTGGGGG AATTTGGTTG CAGCTGCTAG
CAACTGATTG TTTAAGGATC CAGTCTTGTG TATTTATGCC 

>Vigan.06G200900.01
AAGAAAAGTA ATCTCTTATT CGATTGTTGA GATTTTAGGG AAAAAAGAGA TAGATTCTGA GTTGTTACTG TTAATGTAGA
TGAAATGCCA GATCGAACAT TAACAACCAA TTTCTGCAAT TTTTAATTTG CATTCAGATT CTCTTTTCCT TTCTAATCCT
AAACCCTAAT TTTCTTTTTT CACCCTCCAG CGTCGCCGAA ATCCCGAATT CTGTGTGAAG TACTTCACTC CCGATTACTC
TTTGTTTTTG ATTCTTATTC GTTGCTTCTT CTTCCACTAT GAAAGAGGGT AAATCCGTTA ACCATCAACA GCCGCACCAG
AACGGTCACC TCTCGCCTTC AAAATTCGCC AAATTGTTTG ATCCCGAAGC TTCCTGGGAC AAGGATCAGT TGGGAGACGT
TTTGCATTGG ATTAGACAAG GGCTTGGCCT TGTGTGTGGA TTCCTTTGGG GTTCCATACC TTTGGTTGGA GGCATATGGT
TCATCCTCTT TTTGGCACTA TCCACCGGGA TTATATATAG TTATTATGCA GTAATATTAA AGGTTGACGA GGAAGAGTTT
GGTGGTCATG GAGCCCTCCT TCAAGAGGGG CTATTTGCTT CTGTAACTCT TTTCCTGGTA TTATGCTCTG TTGTTCATTG
CTTTATATAC TGTAGAAAAT GAGGCTTTTA TGGTTCGACA GTCTGACTTC AACTTAATAT ATGTGCAGCT TTCCTGGATT
CTAGTTTACA GTTTAGCACA CTTCTGATTG GCTGGGCTTT GAAGATTTAA CAGAGTAGAG AGATTTACTT GATTACATTT
GCCCAAATTG CAGTTATCTG CTTTACTTCT ATGTAAAATG TTCTAATTTT GCAATGCATG CATGAACACT AGCTTCTGCA
TCCCATGGTA ATTGCTGTTT TAGTCAAGCA TTTCTAGTGT GACACATTGT ATTACAACAA ATTTTGTGGA TTGAACCCTG
AAATAAAGTT GTTTGCAGAC AAATCGTGAA GGACCATTTA TCCTTGATGT TTATGCCATA AACATAGAAT TCTCAAATAG
TCTCCCTCAT TTTGTTGGGG TGTTAGTGTT GCTGGTAGGG GATATATATT TTATTGTGGG GGAATTTGGT TGCAGCTGCT
AGCAACTGAT TGTTTAAGGA TCCAGTCTTG TGTATTTATG CC

>Vigan.06G200900.01
ATGAAAGAGG GTAAATCCGT TAACCATCAA CAGCCGCACC AGAACGGTCA CCTCTCGCCT TCAAAATTCG CCAAATTGTT
TGATCCCGAA GCTTCCTGGG ACAAGGATCA GTTGGGAGAC GTTTTGCATT GGATTAGACA AGGGCTTGGC CTTGTGTGTG
GATTCCTTTG GGGTTCCATA CCTTTGGTTG GAGGCATATG GTTCATCCTC TTTTTGGCAC TATCCACCGG GATTATATAT
AGTTATTATG CAGTAATATT AAAGGTTGAC GAGGAAGAGT TTGGTGGTCA TGGAGCCCTC CTTCAAGAGG GGCTATTTGC
TTCTGTAACT CTTTTCCTGG TATTATGCTC TGTTGTTCAT TGCTTTATAT ACTGTAGAAA ATGA

>Vigan.06G200900.01
MKEGKSVNHQ QPHQNGHLSP SKFAKLFDPE ASWDKDQLGD VLHWIRQGLG LVCGFLWGSI PLVGGIWFIL FLALSTGIIY
SYYAVILKVD EEEFGGHGAL LQEGLFASVT LFLVLCSVVH CFIYCRK*