GBrowse Details

Vigan.06G200300.01

Basic Information:
Name: Vigan.06G200300.01
Multiple alignment
Variant Information
Position: Chr06:33653914..33655731 (+ strand)
Length: 1818
Functional Information:
Description: Similar to mitochondrial import inner membrane translocase subunit Tim9-like. [XP_004505864.1, Cicer arietinum]
InterPro: Tim10/DDP family zinc finger (IPR004217)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.56,14.72,24.04,13.60,59.93,70.16,43.39,19.19
Arabidopsis thaliana homolog: AT3G46560.1
Automatic updates:
Name: NM_001249644 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100526964 (LOC100526964), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249885 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500613 (LOC100500613), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:33653914..33654106 (+ strand)
Length: 193
Type: five_prime_UTR
Position: Chr06:33654107..33654201 (+ strand)
Length: 95
Type: CDS
Position: Chr06:33655065..33655251 (+ strand)
Length: 187
Type: CDS
Position: Chr06:33655252..33655731 (+ strand)
Length: 480
Type: three_prime_UTR

>Vigan.06G200300.01 class=Sequence position=Chr06:33653914..33655731 (+ strand)
AAATATACGT GGAACGATGC GTTTTAGTTA AAAGCTGAAA CCCTGAATAA TTTTAGGTTA AGTGGAAACT GGTGGTGTGA
CCTATATATA CCTTCTTCTT TTTTCTCTAC AGCGTTAGGG TTTTGTCTCG ATCGCAGTTT CTTCCGTACT TTCTAGCAAA
ACCCTTCGAC GGTTACTGAT CGGTGGATCA AGTATGGACA AAAGCATGTT AGCGGATCTG GAATCGCTTC CTGAGGCAGA
TAGGCAAAGA ATGTCTGCCA TGATGGAACA GCTCCAAATC CGTGATAGGT TTAATTCCGT TTTGATTCTC ATCACCTTCA
GTTTGCTACA TTTATTCGTT TTCCATTTTT CGAAACTTGG AATTTATGTA TATTGTATGA GCTTGTGTGT TGATGACTAC
CTTTTAGATT TGGGGCTTTC ATGCTAATTT GTTAGTGATG GGCAACACTA TTTTCTTTAT AGAATATCTG TGTGTGCCCT
TTCCATGAAG CCCAGAATGA AGTTCTCCTT AAAACCAGCG CAGCACGCGA ATGTTGCTTC TGGACGTTTT GGGAACTACA
TTTGTTGAAA CCGGCCTAGA TGGTTTCAAA TAAGTTCCAT TCAATCAAAT TAACGCCCTT TACCATTCTC CATTTTGTAA
TTATGGGAAC TTACTGCTGT GGTTCCTCTA AAAATCTTTG CATAGCTGTG AAATTGTGGT GACTTACTCT GGTATTCTAA
TTATCAATTT TTTCTTAAAT ATCCCTAAAG TTATAAAACT AATACGGTGA TGTATTTATG TTTGATATAT TTTACCACCG
TGGATTAATC ATGGATGGTT TTTCAATACT GGATGAACTA CTTGGAATGG TTTCTACTAA TTGAAGAGGT TTAACTATAT
AGCTCATTAC TTTATGCGCC CTTTAGGTGA TATATCTATT CTATAAAGAA TGAAGTTAAT AATTTATTAT GTTTTAAAAT
TATGCCGAAA TGTTTTAGTT TGGGACATTT TGACAGTCTA TTTTATCTGT GAAAGGTAAA TGTTTGAATA TATGAATAAC
TTTCTGTTTT GAAATTGACA TTGTCAATTA TGAGATAGCA AATCTTTGTT TAGTTGATCT TTTGCTTTGT ATAAGGTGGC
ATTCCTGAGT AAGATTTATG TTTCATTGCA GTCTGAGAAT GTATAATTCA CTTGTTGAGA GATGCTTTAC TGATTGTGTT
GACACATTTA AGCATAAATC CCTGCAAAAG CAAGAGGAAT CCTGTGTTCG AAGATGTGCA GAGAAATTTC TGAAGCATTC
TATGCGGGTT GGCATGAGGT TTGCCGAGCT CAACCAAGGA GCTGCAACTC AAGATTGATG TCTGTCAACT TCTTTAAATG
GATAACTGTT TATCATTATT TTGAATGCAC TTTACTTACA TTTTTGGTCT TGAGAAATGA GATACTGTAG AGAACACTAA
TTTGCTATTA GTACGCAACA ATCCTTGTTA AATAAATTTG TGGTGATACA ATCACAGTGC TTTGGAATCC TGACACTTGT
TTAAATGAGG TTTTTAGTTA CCTAACTAGT TTTTATCCAT TGTGAAGATC ATTACTATTA AGGACTTTCC TTCTCCCAGT
CCCTAAGGTC CATTTCACGC ATACCTGGTT CATTACTATG CAGAAAGCCT ATGCCACTAA CTGCATGGGA TTAGGTGCAT
TCAGTAGTAT TTAACATTAT GTAAATATGC CTCCGTTGAT CTCCGATTTA TATGTAATTT GTTAGCAAAT AACGATTTCA
CTTTTTATTG ACATGTTTTT TAAGATGAGA TTATGGTTTT GGTTTTATTG TTATAAAC

>Vigan.06G200300.01
AAATATACGT GGAACGATGC GTTTTAGTTA AAAGCTGAAA CCCTGAATAA TTTTAGGTTA AGTGGAAACT GGTGGTGTGA
CCTATATATA CCTTCTTCTT TTTTCTCTAC AGCGTTAGGG TTTTGTCTCG ATCGCAGTTT CTTCCGTACT TTCTAGCAAA
ACCCTTCGAC GGTTACTGAT CGGTGGATCA AGTATGGACA AAAGCATGTT AGCGGATCTG GAATCGCTTC CTGAGGCAGA
TAGGCAAAGA ATGTCTGCCA TGATGGAACA GCTCCAAATC CGTGATAGTC TGAGAATGTA TAATTCACTT GTTGAGAGAT
GCTTTACTGA TTGTGTTGAC ACATTTAAGC ATAAATCCCT GCAAAAGCAA GAGGAATCCT GTGTTCGAAG ATGTGCAGAG
AAATTTCTGA AGCATTCTAT GCGGGTTGGC ATGAGGTTTG CCGAGCTCAA CCAAGGAGCT GCAACTCAAG ATTGATGTCT
GTCAACTTCT TTAAATGGAT AACTGTTTAT CATTATTTTG AATGCACTTT ACTTACATTT TTGGTCTTGA GAAATGAGAT
ACTGTAGAGA ACACTAATTT GCTATTAGTA CGCAACAATC CTTGTTAAAT AAATTTGTGG TGATACAATC ACAGTGCTTT
GGAATCCTGA CACTTGTTTA AATGAGGTTT TTAGTTACCT AACTAGTTTT TATCCATTGT GAAGATCATT ACTATTAAGG
ACTTTCCTTC TCCCAGTCCC TAAGGTCCAT TTCACGCATA CCTGGTTCAT TACTATGCAG AAAGCCTATG CCACTAACTG
CATGGGATTA GGTGCATTCA GTAGTATTTA ACATTATGTA AATATGCCTC CGTTGATCTC CGATTTATAT GTAATTTGTT
AGCAAATAAC GATTTCACTT TTTATTGACA TGTTTTTTAA GATGAGATTA TGGTTTTGGT TTTATTGTTA TAAAC

>Vigan.06G200300.01
ATGGACAAAA GCATGTTAGC GGATCTGGAA TCGCTTCCTG AGGCAGATAG GCAAAGAATG TCTGCCATGA TGGAACAGCT
CCAAATCCGT GATAGTCTGA GAATGTATAA TTCACTTGTT GAGAGATGCT TTACTGATTG TGTTGACACA TTTAAGCATA
AATCCCTGCA AAAGCAAGAG GAATCCTGTG TTCGAAGATG TGCAGAGAAA TTTCTGAAGC ATTCTATGCG GGTTGGCATG
AGGTTTGCCG AGCTCAACCA AGGAGCTGCA ACTCAAGATT GA

>Vigan.06G200300.01
MDKSMLADLE SLPEADRQRM SAMMEQLQIR DSLRMYNSLV ERCFTDCVDT FKHKSLQKQE ESCVRRCAEK FLKHSMRVGM
RFAELNQGAA TQD*