GBrowse Details

Vigan.06G190500.01

Basic Information:
Name: Vigan.06G190500.01
Multiple alignment
Variant Information
Position: Chr06:32667718..32672307 (- strand)
Length: 4590
Functional Information:
Description: Similar to Uncharacterized protein. [C6TJJ5, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Tetraspanin (IPR000301)
Tetraspanin/Peripherin (IPR018499)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,5.05,48.17,27.46,14.49,76.33,33.25,68.77
Arabidopsis thaliana homolog: AT3G45600.1
Automatic updates:
Name: NM_001254635 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788977 (LOC100788977), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:32667718..32667919 (- strand)
Length: 202
Type: three_prime_UTR
Position: Chr06:32667920..32668264 (- strand)
Length: 345
Type: CDS
Position: Chr06:32671563..32672075 (- strand)
Length: 513
Type: CDS
Position: Chr06:32672076..32672307 (- strand)
Length: 232
Type: five_prime_UTR

>Vigan.06G190500.01 class=Sequence position=Chr06:32667718..32672307 (- strand)
CTCACGCGCT CGCAAATGTT ATTGTCAAAA TATTATGAGA CTCCATAATT AACGAAAAGA AAAGAAAAAA AGAAAAAACA
CATCTTTCGT TTTATTTCAT GCTTACAACA CAGACTGCAT TTATAAATAC AACTCAAGCT TCCATTACTG TCATAACTCT
ATTTTCCGAG CTTAAGAAAG GAACAGAAGA AGATAAGAAG AAAGTAAGAA AGAAGAAGAA GAAGATTGTA AGATGAGAAC
AAGCAACCAC CTGATCGGTG TGCTAAACTT CCTAACGTTT CTGTTGTCGG TTCCGATCCT AGGTGGTGGG ATATGGCTGA
GCAGCAGAGC GAACAACACG GACTGTCTGA AGTTCCTGCA GTGGCCGTTG ATCATAATCG GAGTGAGCAT CATGGTGGTG
TCGCTGGCGG GTTTCGCCGG CGCGTGTTAC CGGAACACGT TTCTGATGCG GCTGTACCTG GTGGTGATGT TCGTGGTGAT
TGCGGTGCTG ATCGGCTTCA TCATATTCGC GTACGTGGTG ACGGACAAAG GGTCGGGTCG GAGGGTGATG AACCGGGCGT
ATTTGGAGTA CAACTTGGAG GACTATTCAG GGTGGTTGGA GGAGCGCGTG GCGAGTGATA GCTACTGGGG GAAGATAGGT
TCGTGCATTA GGGATTCCAG AGTGTGTGCG AAGATGGGGA GAACCATTAA TGGAGTTCCT GAAACTGCTG AAATGTTCTA
CGTTAGACAC CTCACACCTA TTCAGGTATA TGCATTAATC TCTCTTCACT CATTTTCTTT CTTTTTTCTT CTTTTCTGTT
TCTGTTTCTT CAATAATCTG GACCAATCTC TGAATTGATT TTTTATACTA TTTCTTCCAT CGTTTTTTCA ACTGAAAAAA
ACTCTGAAAT AGGAGATTGT TATTTGTTTT TTGAATTTTG AAACACATAA GATAGGGCAC CCTATAGTTT GTTGACTGAT
TTGAAACGGT TGTTGGAGCA GGAATTGCAG TTATTTACTT TTTGATTGGT TGTTGGCAGT TCAACTTTTT CTGTAATTGA
TTAAAAGAAA ACAATCAACG TTAAAAATAA TATAAAAAAA TGTGTTATAT TATGGATGTT GTAAGAAATG ATTTATAGAG
TAATTAACGT TAAAGTTTAT AAAAAATATA TTTTCTTTTT GAGGAAAGGT TTTTGTTCAG TGGTTCCAAA GAAAGTATGG
GTGAAACAAA GTTGAAGGAA AGGAAGAGCA TGTATTAAAT GAGTAGATCT TAAATCTCTC TGCAAGAAAC CCTGCGGCAT
GTGGGGTGAT GGGTTTTCAT TTGTCAATTC CGGAAGTTAT GGTTCTCTGT CTAATTCATT GAACCCTAAA CAAATGGAAA
TAAATAAAAT GAAAATACCT ATTATGCATA TACTTTATTT TCCTGTTTCT AATCATATGT TTTATAAAAC TCTTTTTTCT
TTAGCTATAG AAATGATTGT TTTAGATGTT TATAAAACAT TTTTTTTTTA TAAAACAGGA AAGAAAATAT AGCATCAGTA
ACTATAGTGT ATTGTGATAA TTGATGTACT TTGTTATGGA AAGGGGTGGC ATCACTACTA GATACCAAAT GGGTCATGGT
CACATATTTG GCTTTGGTCT TTACATAATT GTGTATACAC ATCATATGAA AGAGTGATCA TGTTAGATAA CATGCCATGA
AGGGATTTTT CTTATGCAGA CTATTGAACA GGTTTGTTAG TAATGACAGA TAGACAATGA TGTGTCATGG TAGGACCATT
TTTGGGGGTG CCCATGTTGC TGATAAGTAA TAGATTATGG TACTGAACGA CATTCATTAA ACATAATCAT GGTACCAAAG
AATTATAGTT TGTTATAATT GCTTAATTTT GAATCATTAT ATCATTTACC ACGAAATAAT ACAGTTCTTA ACTAGTGAGG
GGCTTAATGA TATTATCTCT TTCAGCATTG TTTTTGTCCA TATTCCTAAC CTTTTTCTTT CTTGATAATT AAGCATTGCA
TAATGAGTTA GAATTATTGA CTTCTTATGC GTTTCTGTTT AGGCTTTATT TACACCTGTA TACTTTTTTT GGCTGGGCCA
AGCATGATGT ATACATATAA CCTAACTACC TGTCGCTTTC TCCTTTCTAC AAGCTCCCCC AAATGTTCTA GGATACGTTT
TAAACTTTGA AGATGATTTT ATCTTTTAGG TTCTTTGTTG TTTCCATGTG TAGTACATGT ATTAAGAATC TTGAGGTGAC
AAAATTGTGG AAGATGCTAC AAGGCCATAC TTTTTATACA CATTATCATT CAATAATGGA ATTTGTACAA TGTGTTTTAG
ATGTTAAATT GCTTAACTAT AGCTATCTAT AGTTGATACT ATGTTGTTCA ACATTATTGG TAAAGATCTG TAGATAATGG
CTACTTCTTA CTTATACTGT CTATTTAAAA TAATAATATT TTAACAAATT TTTTTATACT AGTTTTTATT ACTTTTTACT
TTTGTTTTTA AAAGTATAAA AATTTACTCT TTGATGATTA TTTTATTCTC ACACTGTTAC GTGTCATCAT CTACCATTAT
TCATAGTTTT ATGATTTATT AAGGTTTTGA CTTCAGAGTG TTGATTTCTT ATGTTGTACT GGCTGATTTT TTGATCTTTT
AGAATATCTT GACGGTTTCC TTATCTAAAT TATGATTCGT GTGTTTAGGA TTCGTGTGTT GCTCCAATTG GTAGATGAGA
CACACACTGA CAATTTTGTT CTCAGCATGT TGTAATCCAT GTCTCTAGAG AAAGTAACTT TTTAGTGCAT GCTCATGCCA
TAAGATTTTT CTGGGGGAAA GAAAAAGGGT AATTAAACAA TAACTGCCAC GCGGCACAAA CGATAAAGAC AAACACAAAA
TCTCTTCTTT TTTAAAACAC AAAATATTCA TGCAACTGTT TTCACAAACT CAGCACAGGA CAGCAGGTGG GGTGGTAGTT
TCAAGGTTCT GTTTGTTGAA AGCAGTCCTG GTTAAATAAA GGAAGATTAT CATATTTTTT TTACTAAAAT ACACTTTTGA
TTTTTTATTT TTATTTAATT AAATTTTTCA CAGTTTAAGA TTTTTTTTAC TGAGTCTCTA AAGGGTTAGA TCATGTTTGT
CTTTATGTCT GTCAGGAAAT CATACAGAAT TTGATAGCAT GTCATGAATA GTAATGGTTT CATTAGAAGA GTAGTGATAC
AAAACCAGAA GAGAAATAAA TTTGTTTGAG TTCTATGCAC TTTTTCATTT TATTTTTAGT TATTTTTCTT ATCTCACATT
TTTCGTATTT TTTAAAATTA AATATCTTAA TTTCTACTTC ATTTCCACTT ATTTTTATCC ATTTTTTAAA TTCCATTTAC
CCTTTTTCTT TGTACCTAAC AGACCAAAAG TACGACTAAT TATGAGAGAG TCTTTTGGGT CAGCCAAAAT TATCAAGAAC
TGTATAAAAG AACTGACCAA AATACCAATA ATGCAGACAC TTTAAGATAC TACTTTGAAA TTTGTTCAAC TTAAAAGTTC
AAAATTAATC AAATAATTGA TAAGAGACTG GAAATGTATG TATAAGTTCA TGGTGATGCG TTGAAAGGGA GACATTATTT
AAAACCAAAT AAGAATAATA TATAATTCAA ATGACTCAAA AATGTATTGA CTGTTTTAAT TAAAAATAGT GTTTTGATTT
TTATATGAAT TTATTGACGA CTTATTGATG TTAAATATTC TGAATTGTTT CTGTTTGTAT CATACCTAAT ACTTTTACGT
TGATTAGGAA TCTGATATAT ATGTTTTTAT CATACCTAAT ACTTCTATCT TGTTTAAGAA TGGAAATATA AGACAATTTA
AATATTTTTT ATTTTATTTT ATTTTTTAAA GTATTTCGGA TTTATGGTAA TTAATCATAA CAATGTCATT TGACATATTT
GAGATCCGAA CAATTATTTT TAAATTTTTT GTTTGATTCA AACCAAAATG ACCTTAATAT TTTGTTGTTA AACCTATATG
TCATGCAGTA GAATGAAGTA ATGTTCTGTT TTGTGTGTTA CAGTCTGGTT GCTGCAAGCC CCCCGCAGAA TGTGGTTATG
TGTATCAGAA TGAGACTGTG TGGAACCTAG GATCAGGATT GATGGGAGCC AATGCAGATT GCACAAGGTG GAGCAATGAT
CAAGAACAAC TTTGCTATGC CTGTAATTCC TGCAAGGCTG GTGTGCTGGC AAGTCTGAAG AAGAGTTGGA GGAAGGTCTC
AGTGATCAAC ATTGTTGTTA TGATCCTCCT TGTCATTGTT TACATAGTTG CTTATGCAGC ATATAGGAAC AACAAGAGGA
TGGATAATGA TGAACCCTAT GGTGAAGCCA GGATGACAAA GTCACAACCT AGTGCCTTTC ATCTTTAGTG CCATGCCAAA
CATGTCTTAG GATTTTGAGC CTTTTTTTTC CTTTGTAACT AGGATGTTCT AATGGTTTTG TCTCAAACAT GAATTTGGTT
TTCATCTTCC AAGAATGAGT ATTTAATTAT TATATATTTG CTTGGTAACT TCACATTTTT TAATGTTGGA ATTAGTATGG
ATGGATTTGT AAGGATAGAG AAAATATTTT 

>Vigan.06G190500.01
CTCACGCGCT CGCAAATGTT ATTGTCAAAA TATTATGAGA CTCCATAATT AACGAAAAGA AAAGAAAAAA AGAAAAAACA
CATCTTTCGT TTTATTTCAT GCTTACAACA CAGACTGCAT TTATAAATAC AACTCAAGCT TCCATTACTG TCATAACTCT
ATTTTCCGAG CTTAAGAAAG GAACAGAAGA AGATAAGAAG AAAGTAAGAA AGAAGAAGAA GAAGATTGTA AGATGAGAAC
AAGCAACCAC CTGATCGGTG TGCTAAACTT CCTAACGTTT CTGTTGTCGG TTCCGATCCT AGGTGGTGGG ATATGGCTGA
GCAGCAGAGC GAACAACACG GACTGTCTGA AGTTCCTGCA GTGGCCGTTG ATCATAATCG GAGTGAGCAT CATGGTGGTG
TCGCTGGCGG GTTTCGCCGG CGCGTGTTAC CGGAACACGT TTCTGATGCG GCTGTACCTG GTGGTGATGT TCGTGGTGAT
TGCGGTGCTG ATCGGCTTCA TCATATTCGC GTACGTGGTG ACGGACAAAG GGTCGGGTCG GAGGGTGATG AACCGGGCGT
ATTTGGAGTA CAACTTGGAG GACTATTCAG GGTGGTTGGA GGAGCGCGTG GCGAGTGATA GCTACTGGGG GAAGATAGGT
TCGTGCATTA GGGATTCCAG AGTGTGTGCG AAGATGGGGA GAACCATTAA TGGAGTTCCT GAAACTGCTG AAATGTTCTA
CGTTAGACAC CTCACACCTA TTCAGTCTGG TTGCTGCAAG CCCCCCGCAG AATGTGGTTA TGTGTATCAG AATGAGACTG
TGTGGAACCT AGGATCAGGA TTGATGGGAG CCAATGCAGA TTGCACAAGG TGGAGCAATG ATCAAGAACA ACTTTGCTAT
GCCTGTAATT CCTGCAAGGC TGGTGTGCTG GCAAGTCTGA AGAAGAGTTG GAGGAAGGTC TCAGTGATCA ACATTGTTGT
TATGATCCTC CTTGTCATTG TTTACATAGT TGCTTATGCA GCATATAGGA ACAACAAGAG GATGGATAAT GATGAACCCT
ATGGTGAAGC CAGGATGACA AAGTCACAAC CTAGTGCCTT TCATCTTTAG TGCCATGCCA AACATGTCTT AGGATTTTGA
GCCTTTTTTT TCCTTTGTAA CTAGGATGTT CTAATGGTTT TGTCTCAAAC ATGAATTTGG TTTTCATCTT CCAAGAATGA
GTATTTAATT ATTATATATT TGCTTGGTAA CTTCACATTT TTTAATGTTG GAATTAGTAT GGATGGATTT GTAAGGATAG
AGAAAATATT TT

>Vigan.06G190500.01
ATGAGAACAA GCAACCACCT GATCGGTGTG CTAAACTTCC TAACGTTTCT GTTGTCGGTT CCGATCCTAG GTGGTGGGAT
ATGGCTGAGC AGCAGAGCGA ACAACACGGA CTGTCTGAAG TTCCTGCAGT GGCCGTTGAT CATAATCGGA GTGAGCATCA
TGGTGGTGTC GCTGGCGGGT TTCGCCGGCG CGTGTTACCG GAACACGTTT CTGATGCGGC TGTACCTGGT GGTGATGTTC
GTGGTGATTG CGGTGCTGAT CGGCTTCATC ATATTCGCGT ACGTGGTGAC GGACAAAGGG TCGGGTCGGA GGGTGATGAA
CCGGGCGTAT TTGGAGTACA ACTTGGAGGA CTATTCAGGG TGGTTGGAGG AGCGCGTGGC GAGTGATAGC TACTGGGGGA
AGATAGGTTC GTGCATTAGG GATTCCAGAG TGTGTGCGAA GATGGGGAGA ACCATTAATG GAGTTCCTGA AACTGCTGAA
ATGTTCTACG TTAGACACCT CACACCTATT CAGTCTGGTT GCTGCAAGCC CCCCGCAGAA TGTGGTTATG TGTATCAGAA
TGAGACTGTG TGGAACCTAG GATCAGGATT GATGGGAGCC AATGCAGATT GCACAAGGTG GAGCAATGAT CAAGAACAAC
TTTGCTATGC CTGTAATTCC TGCAAGGCTG GTGTGCTGGC AAGTCTGAAG AAGAGTTGGA GGAAGGTCTC AGTGATCAAC
ATTGTTGTTA TGATCCTCCT TGTCATTGTT TACATAGTTG CTTATGCAGC ATATAGGAAC AACAAGAGGA TGGATAATGA
TGAACCCTAT GGTGAAGCCA GGATGACAAA GTCACAACCT AGTGCCTTTC ATCTTTAG

>Vigan.06G190500.01
MRTSNHLIGV LNFLTFLLSV PILGGGIWLS SRANNTDCLK FLQWPLIIIG VSIMVVSLAG FAGACYRNTF LMRLYLVVMF
VVIAVLIGFI IFAYVVTDKG SGRRVMNRAY LEYNLEDYSG WLEERVASDS YWGKIGSCIR DSRVCAKMGR TINGVPETAE
MFYVRHLTPI QSGCCKPPAE CGYVYQNETV WNLGSGLMGA NADCTRWSND QEQLCYACNS CKAGVLASLK KSWRKVSVIN
IVVMILLVIV YIVAYAAYRN NKRMDNDEPY GEARMTKSQP SAFHL*