GBrowse Details

Vigan.06G190300.01

Basic Information:
Name: Vigan.06G190300.01
Multiple alignment
Variant Information
Position: Chr06:32654531..32656635 (- strand)
Length: 2105
Functional Information:
Description: Similar to Uncharacterized protein. [I1LKC5, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.49,1.26,5.81,5.09,7.30,3.05,0.90,0.86
Automatic updates:
Name: NM_001317549 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LOB domain-containing protein 1-like (LOC100797804), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:32654531..32654939 (- strand)
Length: 409
Type: three_prime_UTR
Position: Chr06:32654940..32655302 (- strand)
Length: 363
Type: CDS
Position: Chr06:32656142..32656393 (- strand)
Length: 252
Type: CDS
Position: Chr06:32656394..32656635 (- strand)
Length: 242
Type: five_prime_UTR

>Vigan.06G190300.01 class=Sequence position=Chr06:32654531..32656635 (- strand)
CAGCCACGTA GGTTAACGAA ATTCAACTGT GACATCACTT TTCCATGCCA TGACATGCTT CCAGCTTCTC CTTTTCTTTA
TAAAAAGGAT TAGGATTCAG CTTCCATTAA CAAACCCCAC CAAGCCACAA GCACACCCTC TTCTTCTTTC TTTCTTTCTT
TGTGTCCCTC AAACACGACA CAACCAGAGA ACAGAAACAC ACAAAGGAAC AGACAAACAA ACAAACAAGG TTAGAAACTG
AGATGGAGAG CAGTGACACA TACACCCCTA CTTCCTCTGC TCCACTTTCT CACTCCCCCA CTTCCTCTTC TTCTTCACCA
CCACCTCCTC CACCTCCCAC TGTTGTCATG AGCCCTTGTG CTGCATGCAA GATTTTGAGG AGAAGATGTG CTGAGAAATG
TGTTCTGGCA CCTTATTTCC CTCCCACTGA ACCTGCAAAG TTTACCATTG CTCACCGTGT GTTTGGTGCC AGCAACATCA
TCAAGTTCCT ACAGGTTCTG CTCACATCAC CCTTTAAAAC CATACTTATT TGATTCCCTG TCTTCAATCT AAACCAAATC
AAAAACGTTT TTCAACATGT TTCTGCTATC TGAAGTCTGT GTGTGAGATA TCGTGGTACA TGTTAATTAA TTCCTTCATA
TGCATTATTA ATTTTCACAA AATTAAGCAT TGATCTTTGA GATCATGGAG TTCCAACAAG ATTTTAGGAA ACTCTCCATT
TTTGTACTTA TCACCCGACA AAGCATCCTC TGCACACACA CACACACAAT ATTCACTTCT AGCCTCTAAA AATAATCTCT
CCTACAAAAA AAAAAAACTG TCTTTTCTCT TTCTTTTTAT TTGTGAAAAG AGATGACAGA TAACATATTT CTACACATGA
TGAGTAAACA GTTTTCTTTA TGGATTCAAA ACAAAAATTA CTTTATAAGA AGTAACAGAT TTGATTTTTG TAAAAAGTAT
TCCCTACTTT AGCAGTGAAA CTTGAAAAGT AAAAGGTACT AAAGACTAAT TATGCCAAGC TTCTGACTTT AATTGTTTTT
TCTAAGGTCA ATGAGGGCCT TTACCCGATT AGAAGAAATG GAGCATAGTG TTCTAATACG ATAACAAATG CGTTATCAAC
CACCTAATTT TAACAAACAC CTGGTGGGGT CTCCAAGTGG TGATATTCAT TTAACAATCT TCTGTATTCC AAGTCTCGGT
CTTTGATAAG TCTTTAAAAA TGAAATCTGA GATCTAGAAG CAATCAACAG ATACCTAATT TTGGAACCAA TAAATGCTTT
TGTCAAGGTT TTTCATTTCG TCATCTAAAC ATGTTGTTGC ACATACCTTT CAGGAACTTC CAGAGTCTCA GAGGGCTGAT
GCAGTGACCA GCATGGTTTA CGAGGCTAGT GCAAGAATAA GAGACCCTGT TTATGGCTGT GCAGGAGCAA TCTGCCAGCT
CCAGAAGCAG GTGAATGAAC TTCAAGCACA ATTGGCCAAA TCACAAGCTG AGCTTGTAAC CATGCAACTT CAGCAAGCCA
ATCTTGTGGC TCTGATCTGC ATGGAAATGG CACAGAGTCC ACAGGAATCA CCACAACAAT CAGTCGACAA TTTCATTTCA
ACTCCTCCTC ACACCGGTGG CTATCAAAGC GGCGTGAACA ACTTCTTTGA GGAGAACACT AGCCCAAACT CACTATGGGA
GCCCCTTTGG ACTTGAAAAA CAAAATCATA TCAATTTTAA TTAAATATAA AACATATAGT TTAGACATTC ACAAAAAATG
TTCCAATGAT TGTCTCCTAA GGAGAACTTC AAGGAATCAA TTAGAACTAA TAAAAATCAA TTCAGGGCTA GGATTTATTA
GGCTAATTCA ATTCCATGCA TGAGGAAAAG AATGTCATTG CTGCTATATC TGGTAAGAAG TTCCTGTTTT CAGTCCTATG
ATCATGTTAG TCAATCCAAT TTGCTTCGTA TGAAAAATCC AATGTTAAGA GATTCATTCA CTTGCTGATC ACAGTCTCCA
ACTTGTTGTA ACACCTAAAT TAAACATCAT CATCATACAA ATAGTTGATG GTGTTTTGCT CCATGTAATC TTTGAAATTT
AAGAGAAAGA AAATTGTTCT TACAA

>Vigan.06G190300.01
CAGCCACGTA GGTTAACGAA ATTCAACTGT GACATCACTT TTCCATGCCA TGACATGCTT CCAGCTTCTC CTTTTCTTTA
TAAAAAGGAT TAGGATTCAG CTTCCATTAA CAAACCCCAC CAAGCCACAA GCACACCCTC TTCTTCTTTC TTTCTTTCTT
TGTGTCCCTC AAACACGACA CAACCAGAGA ACAGAAACAC ACAAAGGAAC AGACAAACAA ACAAACAAGG TTAGAAACTG
AGATGGAGAG CAGTGACACA TACACCCCTA CTTCCTCTGC TCCACTTTCT CACTCCCCCA CTTCCTCTTC TTCTTCACCA
CCACCTCCTC CACCTCCCAC TGTTGTCATG AGCCCTTGTG CTGCATGCAA GATTTTGAGG AGAAGATGTG CTGAGAAATG
TGTTCTGGCA CCTTATTTCC CTCCCACTGA ACCTGCAAAG TTTACCATTG CTCACCGTGT GTTTGGTGCC AGCAACATCA
TCAAGTTCCT ACAGGAACTT CCAGAGTCTC AGAGGGCTGA TGCAGTGACC AGCATGGTTT ACGAGGCTAG TGCAAGAATA
AGAGACCCTG TTTATGGCTG TGCAGGAGCA ATCTGCCAGC TCCAGAAGCA GGTGAATGAA CTTCAAGCAC AATTGGCCAA
ATCACAAGCT GAGCTTGTAA CCATGCAACT TCAGCAAGCC AATCTTGTGG CTCTGATCTG CATGGAAATG GCACAGAGTC
CACAGGAATC ACCACAACAA TCAGTCGACA ATTTCATTTC AACTCCTCCT CACACCGGTG GCTATCAAAG CGGCGTGAAC
AACTTCTTTG AGGAGAACAC TAGCCCAAAC TCACTATGGG AGCCCCTTTG GACTTGAAAA ACAAAATCAT ATCAATTTTA
ATTAAATATA AAACATATAG TTTAGACATT CACAAAAAAT GTTCCAATGA TTGTCTCCTA AGGAGAACTT CAAGGAATCA
ATTAGAACTA ATAAAAATCA ATTCAGGGCT AGGATTTATT AGGCTAATTC AATTCCATGC ATGAGGAAAA GAATGTCATT
GCTGCTATAT CTGGTAAGAA GTTCCTGTTT TCAGTCCTAT GATCATGTTA GTCAATCCAA TTTGCTTCGT ATGAAAAATC
CAATGTTAAG AGATTCATTC ACTTGCTGAT CACAGTCTCC AACTTGTTGT AACACCTAAA TTAAACATCA TCATCATACA
AATAGTTGAT GGTGTTTTGC TCCATGTAAT CTTTGAAATT TAAGAGAAAG AAAATTGTTC TTACAA

>Vigan.06G190300.01
ATGGAGAGCA GTGACACATA CACCCCTACT TCCTCTGCTC CACTTTCTCA CTCCCCCACT TCCTCTTCTT CTTCACCACC
ACCTCCTCCA CCTCCCACTG TTGTCATGAG CCCTTGTGCT GCATGCAAGA TTTTGAGGAG AAGATGTGCT GAGAAATGTG
TTCTGGCACC TTATTTCCCT CCCACTGAAC CTGCAAAGTT TACCATTGCT CACCGTGTGT TTGGTGCCAG CAACATCATC
AAGTTCCTAC AGGAACTTCC AGAGTCTCAG AGGGCTGATG CAGTGACCAG CATGGTTTAC GAGGCTAGTG CAAGAATAAG
AGACCCTGTT TATGGCTGTG CAGGAGCAAT CTGCCAGCTC CAGAAGCAGG TGAATGAACT TCAAGCACAA TTGGCCAAAT
CACAAGCTGA GCTTGTAACC ATGCAACTTC AGCAAGCCAA TCTTGTGGCT CTGATCTGCA TGGAAATGGC ACAGAGTCCA
CAGGAATCAC CACAACAATC AGTCGACAAT TTCATTTCAA CTCCTCCTCA CACCGGTGGC TATCAAAGCG GCGTGAACAA
CTTCTTTGAG GAGAACACTA GCCCAAACTC ACTATGGGAG CCCCTTTGGA CTTGA

>Vigan.06G190300.01
MESSDTYTPT SSAPLSHSPT SSSSSPPPPP PPTVVMSPCA ACKILRRRCA EKCVLAPYFP PTEPAKFTIA HRVFGASNII
KFLQELPESQ RADAVTSMVY EASARIRDPV YGCAGAICQL QKQVNELQAQ LAKSQAELVT MQLQQANLVA LICMEMAQSP
QESPQQSVDN FISTPPHTGG YQSGVNNFFE ENTSPNSLWE PLWT*