GBrowse Details

Vigan.06G183400.01

Basic Information:
Name: Vigan.06G183400.01
Multiple alignment
Variant Information
Position: Chr06:32053204..32057240 (- strand)
Length: 4037
Functional Information:
Description: Similar to double-stranded RNA-binding protein 2. [XP_003538171.1, Glycine max]
InterPro: Double-stranded RNA-binding domain (IPR014720)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:55.43,30.96,11.25,10.82,8.20,16.47,11.25,12.48
Arabidopsis thaliana homolog: AT2G28380.1
Automatic updates:
Name: NM_001254313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dsRNA-binding protein Drb2a (DRB2A), mRNA.
PubMed ID: 29087011 NCBI(pubmed)
18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:32053204..32053780 (- strand)
Length: 577
Type: three_prime_UTR
Position: Chr06:32053781..32054547 (- strand)
Length: 767
Type: CDS
Position: Chr06:32055978..32056197 (- strand)
Length: 220
Type: CDS
Position: Chr06:32056720..32056965 (- strand)
Length: 246
Type: CDS
Position: Chr06:32056966..32057240 (- strand)
Length: 275
Type: five_prime_UTR

>Vigan.06G183400.01 class=Sequence position=Chr06:32053204..32057240 (- strand)
TTTTCTTTCT TTTCTTTCCT TCTAGCTAAC TCTTCATCTT CTTCTCGTTC TTCTCGTTCT TCTTCGTTTT CTCTCTCTTC
TCTGGTTTTT GTGCCTGTGC TGTTACGGCA CTGTCTTCTT CTCATTTGCC GAGGTCCAAG GCCTCACCGG AGAGAGGGGT
TCGATTTGGC CGGACTGGAA TCTCCGGCGA CAATTAGCGG CCGAGGGGAT CGGATCAGTT CTTGAGAGAG AAAGTGTGGT
GAGGTTAGCG AGGGAGAGAG TGTGAGGGGG GGAAAATGTA CAAAAACCAG CTTCAGGAGC TGGCACAGCG AAGCTGCTTC
AACCTGCCTT CCTACACGTG CATTCGGGAA GGTCCTGATC ACGCGCCGCG TTTCAAGGCC ACGGTTAACT TCAACGGCGA
GATCTTCGAG AGTCCTCAAT ACTGCTCCAC GCTCCGTCAG GCGGAGCACT CCGCCGCCGA GGTCGCGCTC AATTCGCTCT
CCAACCGTGC TCCCTCTCAC TCCCTCGCCG CCAGGATCCT CGTGAGTTTC TCTCTCCATA GCTTTTTTTT CTTGTGTGTG
AAATTACCGA ACTATCCTTG CTCTGTGAAC TTTGCCGTTG CGCCTTCGTT TGTTGTGCAA TGCCGTTTCG CCTTTGTTTG
GTTTTTGAAT TTAAGGTTAT TGGGGAATTT TGAAGCTAAT TTTAGTAATT GTTATTATTG GAAATCGATT CTGTGAATGA
GATCGTGAGA TTCGTTTCTT AAAAAGTGCT TCAGCTTTTC ACTCCTCTGT TGTGAATTTT CTTAATTTTA TGCTGATGCT
CTTCCTTTTT CTTGTGTTAA CTTGAGAATA ATTGTAAGCA TTGTTTGTTT GCTTCACCGA GAACTCTCGC TCTCTTCTTT
CCGCTGCGCG AATATTTTAT GCACGTTTAA GAGTGTTTTA TTCGAAATTT ATGTTTAAAA GCTTCGTTTT CACTGTATGT
GTGAAGATAT TATTGATGGT TTTTTGGTTT GTGTTCTTAT TATACTTTTC GGGTTGATGT GCTTACTGGA TGTAAATTGT
TAGGATGAAA CGGGAGTGTA CAAGAACCTT CTGCAGGAAA TTGCTCAGAG GGTAGCGGCG CCATTGCCGC AGTACTTTAC
GTTCAGGTCA GGATTAGGAC ATCTTCCTGT GTTTACTGGG ACAGTGGAGT TAGCTGGAAT TATGTTTACT GGTGAACCTG
CTAAGAACAA GAAACAAGCG GAGAAAAATG CGGCTATGGC GGCTTGGTCT TCTCTAAAGC AATGTAAGTG ACTGGCTAGC
TTTTGTCTGA ATGTTTTTCT TTCATGTGAA AAGATATGGA ACTTTTACAT CAGTTTGTCG TATGAATATT GCTTCAAGAT
GCCATAAAAG GGAACAGTGG CGATTCCCGG CCCACCACTG TATTCCTAAT TCGTGTAACT AATTTTGCAA TTAACCATGA
GGAAATTTTC ATATTATGGG ATTGCTGAGG CAGTGTACTC GCTGTTCCTA CCCAATATGC TCTCTTGTAG TTTCCTCTTA
TCCGTGGTAG AGGCCAAAAG CATCTTTGAA GATTCATCCT TGCCCCTTTC GACTTTCCTT TGAGAAACAT TATATTATGT
GCCAGATGGT TTTACCTGCT TACGTGCCTT TCTAAACTAC CTTCAATCCA CTCCTTTTTG TATTCTAGTG AGTTTTAAGT
GGGCTTCCTA ATAGCAGAAA ATCACACTGC TAAAGTGGCA ATGCAGGGTG GGGTGGTTCA TGGCTGCTGT AAATTATTCT
CTATCTTAAT GCCCTTGAGC AAGTTGTAGT TGATATTAAT TGGGGCAAAA CTACACCTTT AGCACTGTAA ACTCTAGGGG
TGTAATGCCT GTTTTATGGT AAGCTCCGCA TGTCTGTCCC AGCTTAAATC CAGTGAAGAA ATCTTTTATT TATCAACTCT
GGAAGTTTAC AAAATATGTA ATCGTGTTTC CTAATTAAGG TGAACTGATT AGAAAAAGGC CACACCTGTT TAACCTTAAG
TTTTCTTCCA ATTTGCTTTA CAACTAAATT CTGGAAATTC AAGCATTCTC CCGTCAGAAC TACCTTCTTT GGGGCAGACC
AGTCTATGCA TGTTATCTGG TCTTTGCTCT GTCACTACTG TTTCCTACAA CTTTATAGAT ACAGTATGAC CTTTCTATCT
TATTACACCT GTTACTTAAC TGACTAATTA TTTTTTTCGT TTGGTGCACA GACCAGCGTT CAAAGTTGTT TGGCAATAGT
AGTCCCCAGC CACTGTTCTA GTTCCAGCCA TTCAAACTTT TCTGCTTCCA AATTCCTGTG CTTGATATAC TGACTTGTTT
ATTGCCTAAG TTGAGTATAG TTCAAACTAG TTTGACAATA GTAGTCCCCA GCCACTGTTC TAGTTTCAGC CATTCCAACT
TTGCTGCTTC CATTTTTCTG TGTTTGATAT GCTAACTTGT TTATTGCCTT AGGTTGAGTA TGATTGTGCG CCTAGACTAA
TAATGTAGTC TTCAATTTTG ATAGCTTTTA GTTTTTTGAG TGTTTGTTCA TGTGTAGTAT AAATTTCCTG TCTCCATAAC
ATTTAAATAC ACTGGCAATT TTTGGGTTTG CGGGTCAGAC TGCTATCTGC TATTATCTGT CACTAACAAC TGTGGCCCTT
AAGATATGTA TAGCTGATGA GTATGAATTA ACAATAATTT TCTTTCTTGA CAGTGGCAAA AGAAACTGCA AGGTCTTCAA
CTGAACCTGA GAACAACGAC GAACTGGAAC AGATCACTAT AGCACGGGCT TTGCGAAACT ACCGTCTGAA GGAAAAGATT
TCAATGTCAA ATCCAAATGC GCCTATTCCA TTTCCAAAGA AGTTTCAAAT TCAAAATCCC AGACCAACCA GTCCTCAGCC
TCCTCCTGCT GCTACATCAA AGATTCTTCC CTTAATATGC CAAAAGGCAG CTTCTCGAAG CAGGCATCCT GTCGCAGCAT
CGCCAGCACC AGCAGTCAGT GACAATTCTG CTATGCCACA ACTCTCTGCC ACATCAGATA GCCGAAGAAT TCGTCGCCCT
AAGTTCCCTG CTGCTGGAGC AGCACCTTAT GTTCCCATTA GACAGATGAG ACCACCTTGC CAGGGAATGG CACCTCCGGT
GACGATAAGG ACTTCTATAC CTGTATTCTC TCCACCACCG CCAACAGCTG CCACAATGTC TCTTCCAGTA CTACGAGCTC
CTCCTGTACG AGTTGCTCCT CCTGTTACTA TTAGGCAAGC TGTTCCAGTA TTTGCGGCTC CACCTGTAAG AATAGACGAA
CCTGTTCCCA GCCTTACCAG CCTAGAACCC GTTCCTACCC GAAAAGACGA TGCTCCAACT ATTAGTTCCC CCAGCCTGGA
AGACAAACTA CCAGTTAAAA CTCCAGAGAC AGAGATGAAG ACTGAGAAAA TTTCAGCTGA ATCTGAGACA GTGCAGAGCT
TGGCACAGCT GAAAATTTGA TGCTTCATTG GAGTTGAGGT CTGAATCCAT GAGACTGTGG TCATGGTTCT ATGACGATGT
GGAGTTTGCT TCTCATGTTA TAATGAGTGA TGTAATATCA TCCCTTCCTT TTGTCCTGTT AAAATCAGAC AGTTGGTGCC
GGATAGCATC AGCGGTCCAA ATATCTGTGA AATTCAAGAG CGGTTTACCA TATAATTTGC CCTTTTTATG TTTATTTTTT
TATGTAGTTA GTCATTTACT ATTTATTATG CAGATTCATG CGCCATCACT CTTATTTGAG CAGGCAATTG GGGCTGATTT
GAGTTTTGTC TTTTGTTTTG AAATGTTAGC TCGTTCACAA AGAAGCCTCA GACACAGGAA TTGCATTGGA CGCAGTTCTA
TATACATCCT AGCTCACTGT TCTTGACATA TCAATGCACC TATCTGACCA CTATCAGATT CTCCAACTTC ATAAACTTTT
TCATCCAAAG TTGTTTATAG TCGTTTGGAT GGAAAATCGT AAATATAATA ATAAATTTAT CTCAAATGAA TTAAATGTGT
ATTGGTATAG AAAAAATTTA TTCAACATAA ATACGGG

>Vigan.06G183400.01
TTTTCTTTCT TTTCTTTCCT TCTAGCTAAC TCTTCATCTT CTTCTCGTTC TTCTCGTTCT TCTTCGTTTT CTCTCTCTTC
TCTGGTTTTT GTGCCTGTGC TGTTACGGCA CTGTCTTCTT CTCATTTGCC GAGGTCCAAG GCCTCACCGG AGAGAGGGGT
TCGATTTGGC CGGACTGGAA TCTCCGGCGA CAATTAGCGG CCGAGGGGAT CGGATCAGTT CTTGAGAGAG AAAGTGTGGT
GAGGTTAGCG AGGGAGAGAG TGTGAGGGGG GGAAAATGTA CAAAAACCAG CTTCAGGAGC TGGCACAGCG AAGCTGCTTC
AACCTGCCTT CCTACACGTG CATTCGGGAA GGTCCTGATC ACGCGCCGCG TTTCAAGGCC ACGGTTAACT TCAACGGCGA
GATCTTCGAG AGTCCTCAAT ACTGCTCCAC GCTCCGTCAG GCGGAGCACT CCGCCGCCGA GGTCGCGCTC AATTCGCTCT
CCAACCGTGC TCCCTCTCAC TCCCTCGCCG CCAGGATCCT CGATGAAACG GGAGTGTACA AGAACCTTCT GCAGGAAATT
GCTCAGAGGG TAGCGGCGCC ATTGCCGCAG TACTTTACGT TCAGGTCAGG ATTAGGACAT CTTCCTGTGT TTACTGGGAC
AGTGGAGTTA GCTGGAATTA TGTTTACTGG TGAACCTGCT AAGAACAAGA AACAAGCGGA GAAAAATGCG GCTATGGCGG
CTTGGTCTTC TCTAAAGCAA TTGGCAAAAG AAACTGCAAG GTCTTCAACT GAACCTGAGA ACAACGACGA ACTGGAACAG
ATCACTATAG CACGGGCTTT GCGAAACTAC CGTCTGAAGG AAAAGATTTC AATGTCAAAT CCAAATGCGC CTATTCCATT
TCCAAAGAAG TTTCAAATTC AAAATCCCAG ACCAACCAGT CCTCAGCCTC CTCCTGCTGC TACATCAAAG ATTCTTCCCT
TAATATGCCA AAAGGCAGCT TCTCGAAGCA GGCATCCTGT CGCAGCATCG CCAGCACCAG CAGTCAGTGA CAATTCTGCT
ATGCCACAAC TCTCTGCCAC ATCAGATAGC CGAAGAATTC GTCGCCCTAA GTTCCCTGCT GCTGGAGCAG CACCTTATGT
TCCCATTAGA CAGATGAGAC CACCTTGCCA GGGAATGGCA CCTCCGGTGA CGATAAGGAC TTCTATACCT GTATTCTCTC
CACCACCGCC AACAGCTGCC ACAATGTCTC TTCCAGTACT ACGAGCTCCT CCTGTACGAG TTGCTCCTCC TGTTACTATT
AGGCAAGCTG TTCCAGTATT TGCGGCTCCA CCTGTAAGAA TAGACGAACC TGTTCCCAGC CTTACCAGCC TAGAACCCGT
TCCTACCCGA AAAGACGATG CTCCAACTAT TAGTTCCCCC AGCCTGGAAG ACAAACTACC AGTTAAAACT CCAGAGACAG
AGATGAAGAC TGAGAAAATT TCAGCTGAAT CTGAGACAGT GCAGAGCTTG GCACAGCTGA AAATTTGATG CTTCATTGGA
GTTGAGGTCT GAATCCATGA GACTGTGGTC ATGGTTCTAT GACGATGTGG AGTTTGCTTC TCATGTTATA ATGAGTGATG
TAATATCATC CCTTCCTTTT GTCCTGTTAA AATCAGACAG TTGGTGCCGG ATAGCATCAG CGGTCCAAAT ATCTGTGAAA
TTCAAGAGCG GTTTACCATA TAATTTGCCC TTTTTATGTT TATTTTTTTA TGTAGTTAGT CATTTACTAT TTATTATGCA
GATTCATGCG CCATCACTCT TATTTGAGCA GGCAATTGGG GCTGATTTGA GTTTTGTCTT TTGTTTTGAA ATGTTAGCTC
GTTCACAAAG AAGCCTCAGA CACAGGAATT GCATTGGACG CAGTTCTATA TACATCCTAG CTCACTGTTC TTGACATATC
AATGCACCTA TCTGACCACT ATCAGATTCT CCAACTTCAT AAACTTTTTC ATCCAAAGTT GTTTATAGTC GTTTGGATGG
AAAATCGTAA ATATAATAAT AAATTTATCT CAAATGAATT AAATGTGTAT TGGTATAGAA AAAATTTATT CAACATAAAT
ACGGG

>Vigan.06G183400.01
ATGTACAAAA ACCAGCTTCA GGAGCTGGCA CAGCGAAGCT GCTTCAACCT GCCTTCCTAC ACGTGCATTC GGGAAGGTCC
TGATCACGCG CCGCGTTTCA AGGCCACGGT TAACTTCAAC GGCGAGATCT TCGAGAGTCC TCAATACTGC TCCACGCTCC
GTCAGGCGGA GCACTCCGCC GCCGAGGTCG CGCTCAATTC GCTCTCCAAC CGTGCTCCCT CTCACTCCCT CGCCGCCAGG
ATCCTCGATG AAACGGGAGT GTACAAGAAC CTTCTGCAGG AAATTGCTCA GAGGGTAGCG GCGCCATTGC CGCAGTACTT
TACGTTCAGG TCAGGATTAG GACATCTTCC TGTGTTTACT GGGACAGTGG AGTTAGCTGG AATTATGTTT ACTGGTGAAC
CTGCTAAGAA CAAGAAACAA GCGGAGAAAA ATGCGGCTAT GGCGGCTTGG TCTTCTCTAA AGCAATTGGC AAAAGAAACT
GCAAGGTCTT CAACTGAACC TGAGAACAAC GACGAACTGG AACAGATCAC TATAGCACGG GCTTTGCGAA ACTACCGTCT
GAAGGAAAAG ATTTCAATGT CAAATCCAAA TGCGCCTATT CCATTTCCAA AGAAGTTTCA AATTCAAAAT CCCAGACCAA
CCAGTCCTCA GCCTCCTCCT GCTGCTACAT CAAAGATTCT TCCCTTAATA TGCCAAAAGG CAGCTTCTCG AAGCAGGCAT
CCTGTCGCAG CATCGCCAGC ACCAGCAGTC AGTGACAATT CTGCTATGCC ACAACTCTCT GCCACATCAG ATAGCCGAAG
AATTCGTCGC CCTAAGTTCC CTGCTGCTGG AGCAGCACCT TATGTTCCCA TTAGACAGAT GAGACCACCT TGCCAGGGAA
TGGCACCTCC GGTGACGATA AGGACTTCTA TACCTGTATT CTCTCCACCA CCGCCAACAG CTGCCACAAT GTCTCTTCCA
GTACTACGAG CTCCTCCTGT ACGAGTTGCT CCTCCTGTTA CTATTAGGCA AGCTGTTCCA GTATTTGCGG CTCCACCTGT
AAGAATAGAC GAACCTGTTC CCAGCCTTAC CAGCCTAGAA CCCGTTCCTA CCCGAAAAGA CGATGCTCCA ACTATTAGTT
CCCCCAGCCT GGAAGACAAA CTACCAGTTA AAACTCCAGA GACAGAGATG AAGACTGAGA AAATTTCAGC TGAATCTGAG
ACAGTGCAGA GCTTGGCACA GCTGAAAATT TGA

>Vigan.06G183400.01
MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNSLSN RAPSHSLAAR
ILDETGVYKN LLQEIAQRVA APLPQYFTFR SGLGHLPVFT GTVELAGIMF TGEPAKNKKQ AEKNAAMAAW SSLKQLAKET
ARSSTEPENN DELEQITIAR ALRNYRLKEK ISMSNPNAPI PFPKKFQIQN PRPTSPQPPP AATSKILPLI CQKAASRSRH
PVAASPAPAV SDNSAMPQLS ATSDSRRIRR PKFPAAGAAP YVPIRQMRPP CQGMAPPVTI RTSIPVFSPP PPTAATMSLP
VLRAPPVRVA PPVTIRQAVP VFAAPPVRID EPVPSLTSLE PVPTRKDDAP TISSPSLEDK LPVKTPETEM KTEKISAESE
TVQSLAQLKI *