GBrowse Details

Vigan.06G176700.01

Basic Information:
Name: Vigan.06G176700.01
Multiple alignment
Variant Information
Position: Chr06:31147605..31152816 (+ strand)
Length: 5212
Functional Information:
Description: Similar to Uncharacterized protein. [C6TD23, Glycine max]
GO: Biological Process: protein transport (GO:0015031)
InterPro: Snf7 (IPR005024)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.61,27.77,27.94,36.40,30.80,31.11,33.80,34.10
Arabidopsis thaliana homolog: AT5G22950.1
Automatic updates:
Name: NM_001253033 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar protein sorting-associated protein 24 homolog 1-like (LOC100797244), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254341 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar protein sorting-associated protein 24 homolog 1-like (LOC100780989), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:31147605..31147764 (+ strand)
Length: 160
Type: five_prime_UTR
Position: Chr06:31147765..31147876 (+ strand)
Length: 112
Type: CDS
Position: Chr06:31147965..31148041 (+ strand)
Length: 77
Type: CDS
Position: Chr06:31148794..31148896 (+ strand)
Length: 103
Type: CDS
Position: Chr06:31151939..31152060 (+ strand)
Length: 122
Type: CDS
Position: Chr06:31152168..31152359 (+ strand)
Length: 192
Type: CDS
Position: Chr06:31152451..31152531 (+ strand)
Length: 81
Type: CDS
Position: Chr06:31152532..31152816 (+ strand)
Length: 285
Type: three_prime_UTR

>Vigan.06G176700.01 class=Sequence position=Chr06:31147605..31152816 (+ strand)
AGAACGATGG TGGGTATTAT TCGTGGAATC GAATTTCAGT AGGATCTAAT CTTCAGAGGT TTTGCCAAAA GAACAAAATT
TGAAGCAATT GTTTTTGTGA GCAAACTCTA ATTCCTTACG ATCTCTTGAA AATCAATTAT CGATTTGGGG ATCAGAGGGA
ATGGAGAAGG TGATGAACAT TCTGAAGCCG AAGCCAAATC CGCAACAACT ATTGAGGGAT TGGCAGCGCA GGCTTCGTCA
GGAGTGTCGC AACATCGAGC GCCAAATTCG CGGTATTCCT TTCTCTTTCT TAAACCCTAA CCATTTTTAT TTTATGATTT
TTTTGGTTTG CTTGATTTTA TGTTTATGGG TTTCTATTAG ATATACAGAG AGAAGAAAAA AGTGTGCAGA AGGCGATCAG
AGAAGCTGCA AAGAGGAATG ACATGGGCTC CGCAAAGGTT TGGCCTTTGT TGTTCTTTTG TTTTGTGACT TGTAATTTGT
TTATTTGATA TTGATTTCCT ATTGTCACTG CCAGTGAGTT CTTTTGGTAG TCATGCAATA ATTTGCCTAA GTTTGAGAGA
TTGAGGAATG TGGGTATATC ACCTCTTAAA TTTATTTGTT GATTATGTAA GTTGTGAGCA GAGTTGATTC TGAATGGAAG
GATATTGGTT TTCTTGGTTG AATGTGGGTT TGGAAGATAT TAATTTATCT TTTACTGCAT ATTTTCATCT TGCTTAATAC
TGTGAGATGT TTCTCTAATT AGATATATAA GCCGATATAC CAAAAATAAA ATATACTTTC CAGTGTAATT TCTAGTGTAG
TGGTGGATGT AGGCATTTGT ACAACCACAT TAAATTCTTA TGTGATTTAT TTTTCTCTTT CCTCTTTTAT CGTCTTGTTC
CTTACAATAC ATTGTGTGTA TTTGTGTTGA ATCTAATGAA TTTTGGGATT GACCAATTGG ATTATGCAAG CATTGGAGGA
AGAACTAGCA GTTATGTAGC TTAAAGTTTG TATGGATTGT GTCCGTTGGT GGGCTGGTTA GGATCAGTCA CAATATTCAG
TAAACTAATA GTGAAAGGAT TTTTGGGATG CATTTGTTTG TGGCCTTCTA GGCATCTATA TGTTATCATT TGAGATTTTA
AGGTTCAAAG GATATGGTTA GTATTTTGAG AAAAAATTCT CCTTATTGTG ATATTTGTAA AATTTGCAGG CACTTGCCAA
GGAACTTGTG AGATCTAAGA AGACTGTTAA CCGTCTCTAT GAAAATAAAG CACAAATGAA TTCTATATCG ATGCACCTTG
GAGAGAGCGT TGGTAGGTTT CTCCATGTTT TATTAGCCTT AACTTAATTT TGCCTTGTAA CAGATAAGGA CTGTCTAAGT
TAGTTACTTG TGTTTGATTC CAGGTTTTTG ATAATTGATC CTTAACTGTA GTAATTTTCT TTTATCTCTC TTGTAACTGA
ATGGTATGGA TAAATTTGTC AACATAGTTG ATTTTATTAA TGATTGAATT TTTGGTTGAG GGAAATGATC ACCTGACATT
TGTTGCTTCT GTCTTTAGTT TTCTTGGATA GAGAGGAGAG AGGTACCGGG ATGTTAATCT AGTGTGCAAA ATGCTGATGG
TTTTTGGTTT TGCCTTGTGG GTTGTTCTTT GGAGGTACCG GGATGTTAAT CCAGTGTGCA CAATTTACCC TCCATCAACC
TAGGTCTTGT CCTTAGGACC TGATCTAAGA AGACAAATCA AAATTTGGAA ACTGCTGTTG CATTTGGTGA AGTTCACGCC
ATACTGCATC TTCTATATTT GTTTCGGTCC ATTGAATCAA AACTTCTGTG GCTGCTCAAA ACTCTTGGGT ATCATGTGAT
TCCCTGCACA ACATTATGTG AATTCCGATC ATCTACTTCT TTAATCAAAT CAATGATATG ATTAATAAAA ATTTGATCAG
TTTCATAATC TGTTGCTCAA CCTATTTCTG AACTCAATTG CTTCGTTAAC AGAGAAGATA TCATTGAGTT TACCCCAAAC
TTTACATTTC AACCTATGGT TTTTATCCCA TTGCTCACCA CAAAATCTAC ATAAACCTTT AGCAATTCTG TCACTAACAT
CTTTGCGAGA TATAGAAGAT GAATTTTTAC CTTTAGTATC CATATTAGCT AAAACAAAAT TCAAACTGGT GATAGAAGAT
GTATGATAAG AATTACATGG TGCCAACCCT GTGCTTACAC ATGTGGTTTG AGTATTGGAA CTTATCACCC TACCTTGCAG
CATTTTCTTC TCTAAATCCT TTAAAATATC CAATTGAAGT CTGCTCAAAT GCACCGCTTC TTGCAAAGGT CGAGGCATAC
GAATGCGGAC AATTTCCTCT AAGTCAATCT TTAATCTGGA CAAAAAGAAA CTCAAGGCCA TGGATTCAGA CACAATCACC
TGAGCCAATA GAGAATCAAA AACCTCCAAA TACTTGTCCA ATTATCCTTG TTTTAATCTT GATAACTCCA CTATTGGTTC
ATCACACACA CTATCATCAA ATTGGCATGC CATATCCTGT AAAATTTGTT GCCAAGACTT ATTCTTGAAA TCAGGTTGAT
GTATGTAATG TCGTTGCCAA GAGAGCTTTT CCATCCATGG ACAGCAGCAA CAATTTTCCT CGTTGAGCCA CCAGAGTAGA
TTCCAATTCA AAGAATTGTT CAGCCTTAGC CCTCCACTTC CTCTAATTGA TTCCATCAAA AGATGGAAAT TGAAGCTCTG
CACGTCCAAG AATTGAAGCT CTGCACGTCC AAGAATTGAA GCAGAAACAT ATGAAGATTC TTGGATACTT TATGTAGATG
GTTCTTGATG ACCCAAATTC AACAGAGCTA AATAAGATTC TAGATTTTCA ATGGACTGCT GTAACATTGT TAATTTTTGC
TGAATAATAT CTTGAGTTGC TGACATATCT GACAAGGTCT TTTTGATAAT ATCTACTCTG CTTTCTAACT CCTTGTTAGT
AACCATCCTT CCCGGCTTAT ACCAATTTTT AATAACTTTT CTCCTTCTTC CGCAACCACA GACAGATACT CTGTCCCCTG
CTATCAACCT TTTCCACCTC TTCCAGTGCC AAACCTGTTC ATGTAACTGC TACCTACTCC ACAAATTTCT CCACCTCCAC
AATTCCTTAA AGCAATGCAC TGACGCACAC TCACAGCTAT ATTACCGGAA CCCAGGTAAC ACTGCCAAAC TTCTCACACA
ACTTATCTGA ATATTTCTGC TTATCTTTTA TCATCAAGGA TAGGGTTTTT ATAACCCAAA ATTACTAGAT TTGTTACAAC
CCACTAACTG AAAACTGAAA GCGATAAAAA ACCCTAATCT AGCAAAGGGG TTTTTACTGT ATTTTTCTTC TCTCTATTTC
CATCAACCCT ATTTCTCACC TATTTCTATC CTTCCCACCT CGCACTCTGT GAGTGTTAGT TTGTAATTTT AAGGTGATTA
TTGTTATACG ATATGAATTT AGTTTCATGT TTTTAAATAG GATCTTACAA TCTGTCATAT TTTCTGTTTC ATTCTCTGTC
TTTGCTGATC CTTAGGTAAG ATCTCCATTT TTTACTACCT TTGTAACCTG AGGTCGAAAC TCCATAATCT ACAAGGAGTA
AAAAAACTTA AATATAACTT CTACCCACTG GAGTTGTTGG CTACATGGAT GGAATGATAC CGTAATGTGA TGTTGTAAAT
CTTGTATATA GATAGACCAT TTTGATTCAA GGAAACTTAA GAAAATCATT GGAGTGATAT GACAAGCTTT GTTGTATACT
GTTTTACAAA TAAGAGGCTA TTTTATATGC ATAACATAGT TTGGGTGGCA ATTATCATCG AGGACTTTCC TTCTTGATAT
ATTGGACTCA AATTCTACAA CTACATTAAA TTTTATTAAT CTAAAATACT AAATAAAATT TGTAAAATTA AATTCATACG
AAAATCAAAA TAAGATATTA AAAGAATAAA CTCCATTGTA ACTCACCGCC TTGTGGTGAA TCTTTATGGT TCAGTACGGG
GAGGAAATTG TTGTACCCAA TTTGTAAGCT GAGAGGGCCC TTTAAAACCA AGACAGAGGG AATGTTTGTT ATGGGCTAGA
GGATGATTTG TATATAGTCA GCCTTCTTCG GTGAGATTTT TTTTCGATTT GGCTTGATGT GGTGACTAAT GTGACATATC
GTATACTTGT AATACTCTCA TGTACCTGTT TATTATAAAT ATACTTATAT GTAATATATA AATTAATCAA TTACTGTTTT
AGCTGTGAAC TCTTATGCAA CTAGTCATCA TGACGGGTTT GTGTCATTAG AATTTTGTTC TTTGGAAATT CATGATTTTT
GGTTGTTTAT GCAGCAATTG CTCGTACCGT GGGGCATCTG TCAAAAAGTG CTGAGGTTAT GAAGCTGGTC AATAATCTCA
TGAAGGCTCC CGAAATGGCT GTGACAATGC AAGAGTTCAG CAAAGAAATG ACTAAGGTAT ACCTACAAAA TCCTTTTAGT
GGTGTGGAAG AATATCACTT TCAATCTTGG TTAGAGAAGA TAGTTGTCGC ATATGTATTT ATGAGTAGTG TTGTCTCTAT
CAGGCAGGAG TTATCGAGGA GATAGTAAAT GATGCTGTGG ACACAGCACT AGATTCCGAG GATATAGAAG ATGAGATAGA
AGAAGAAGTC GATAAAGTGT TGACTGCAAT AGCTGGTGAG ACAGCTGCAC AACTTCCTGA AGCTGTGAGG AAAGAAAGGG
TGAAACAACC TGGTCAAAGT GTTGGAGCCT CAGAGGTATG TTCAGTTGTA GCTAATTTTC TTTATCAACA TGACTCTTTC
TTGCCTTACA CATAACACCA ATCATGGAAT TCATTATTAT TTGCAGGAAG AGGCTATAGC AGAGGGTGTT GATGATGAGG
AAGAAATGGA AGAAATTAGG GCCCGACTTG CTAAAGTTAG ATCATAAGCA AGTATTATAA TCTCGCACCC TCTACCTTGT
ACTCTGGTGT GTTATAAGGG AGATTGAGAT GTTGACAGGT TTGTATCTTA TTTGTTGAAA CAGACAATTG ATAATTATAA
TGGCTAATAT AGTATTGTGA AGGGAGGTTC GTATGTAATT ACACGAAGTT CTTGAAAATG TCTCGAGCTG TAGTTATTTT
TTTTCTTCCT GTGACAAGAT TTAAAGTAAC TTCATGCATT ATTTGGCTCC AAGCAAAACT TAGTTAAATA AAATTAGTAA
AATTAATCAG CA

>Vigan.06G176700.01
AGAACGATGG TGGGTATTAT TCGTGGAATC GAATTTCAGT AGGATCTAAT CTTCAGAGGT TTTGCCAAAA GAACAAAATT
TGAAGCAATT GTTTTTGTGA GCAAACTCTA ATTCCTTACG ATCTCTTGAA AATCAATTAT CGATTTGGGG ATCAGAGGGA
ATGGAGAAGG TGATGAACAT TCTGAAGCCG AAGCCAAATC CGCAACAACT ATTGAGGGAT TGGCAGCGCA GGCTTCGTCA
GGAGTGTCGC AACATCGAGC GCCAAATTCG CGATATACAG AGAGAAGAAA AAAGTGTGCA GAAGGCGATC AGAGAAGCTG
CAAAGAGGAA TGACATGGGC TCCGCAAAGG CACTTGCCAA GGAACTTGTG AGATCTAAGA AGACTGTTAA CCGTCTCTAT
GAAAATAAAG CACAAATGAA TTCTATATCG ATGCACCTTG GAGAGAGCGT TGCAATTGCT CGTACCGTGG GGCATCTGTC
AAAAAGTGCT GAGGTTATGA AGCTGGTCAA TAATCTCATG AAGGCTCCCG AAATGGCTGT GACAATGCAA GAGTTCAGCA
AAGAAATGAC TAAGGCAGGA GTTATCGAGG AGATAGTAAA TGATGCTGTG GACACAGCAC TAGATTCCGA GGATATAGAA
GATGAGATAG AAGAAGAAGT CGATAAAGTG TTGACTGCAA TAGCTGGTGA GACAGCTGCA CAACTTCCTG AAGCTGTGAG
GAAAGAAAGG GTGAAACAAC CTGGTCAAAG TGTTGGAGCC TCAGAGGAAG AGGCTATAGC AGAGGGTGTT GATGATGAGG
AAGAAATGGA AGAAATTAGG GCCCGACTTG CTAAAGTTAG ATCATAAGCA AGTATTATAA TCTCGCACCC TCTACCTTGT
ACTCTGGTGT GTTATAAGGG AGATTGAGAT GTTGACAGGT TTGTATCTTA TTTGTTGAAA CAGACAATTG ATAATTATAA
TGGCTAATAT AGTATTGTGA AGGGAGGTTC GTATGTAATT ACACGAAGTT CTTGAAAATG TCTCGAGCTG TAGTTATTTT
TTTTCTTCCT GTGACAAGAT TTAAAGTAAC TTCATGCATT ATTTGGCTCC AAGCAAAACT TAGTTAAATA AAATTAGTAA
AATTAATCAG CA

>Vigan.06G176700.01
ATGGAGAAGG TGATGAACAT TCTGAAGCCG AAGCCAAATC CGCAACAACT ATTGAGGGAT TGGCAGCGCA GGCTTCGTCA
GGAGTGTCGC AACATCGAGC GCCAAATTCG CGATATACAG AGAGAAGAAA AAAGTGTGCA GAAGGCGATC AGAGAAGCTG
CAAAGAGGAA TGACATGGGC TCCGCAAAGG CACTTGCCAA GGAACTTGTG AGATCTAAGA AGACTGTTAA CCGTCTCTAT
GAAAATAAAG CACAAATGAA TTCTATATCG ATGCACCTTG GAGAGAGCGT TGCAATTGCT CGTACCGTGG GGCATCTGTC
AAAAAGTGCT GAGGTTATGA AGCTGGTCAA TAATCTCATG AAGGCTCCCG AAATGGCTGT GACAATGCAA GAGTTCAGCA
AAGAAATGAC TAAGGCAGGA GTTATCGAGG AGATAGTAAA TGATGCTGTG GACACAGCAC TAGATTCCGA GGATATAGAA
GATGAGATAG AAGAAGAAGT CGATAAAGTG TTGACTGCAA TAGCTGGTGA GACAGCTGCA CAACTTCCTG AAGCTGTGAG
GAAAGAAAGG GTGAAACAAC CTGGTCAAAG TGTTGGAGCC TCAGAGGAAG AGGCTATAGC AGAGGGTGTT GATGATGAGG
AAGAAATGGA AGAAATTAGG GCCCGACTTG CTAAAGTTAG ATCATAA

>Vigan.06G176700.01
MEKVMNILKP KPNPQQLLRD WQRRLRQECR NIERQIRDIQ REEKSVQKAI REAAKRNDMG SAKALAKELV RSKKTVNRLY
ENKAQMNSIS MHLGESVAIA RTVGHLSKSA EVMKLVNNLM KAPEMAVTMQ EFSKEMTKAG VIEEIVNDAV DTALDSEDIE
DEIEEEVDKV LTAIAGETAA QLPEAVRKER VKQPGQSVGA SEEEAIAEGV DDEEEMEEIR ARLAKVRS*