VIGGS:GBrowse

Vigan.06G170000.01

Basic Information:

Name:	Vigan.06G170000.01 Multiple alignment Variant Information
Position:	Chr06:30300835..30302336 (- strand)
Length:	1502

Functional Information:

Description:	Similar to 60S ribosomal protein L2, mitochondrial-like. [XP_004489795.1, Cicer arietinum]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: large ribosomal subunit (GO:0015934)
	Molecular Function: RNA binding (GO:0003723)
	Molecular Function: structural constituent of ribosome (GO:0003735)
	Molecular Function: transferase activity (GO:0016740)
InterPro:	Ribosomal protein L2 (IPR002171)
	Ribosomal protein L2, bacterial/organellar-type (IPR005880)
	Translation protein SH3-like domain (IPR008991)
	Ribosomal protein L2 domain 2 (IPR014722)
	Ribosomal protein L2, domain 3 (IPR014726)
	Ribosomal protein L2, C-terminal (IPR022669)
	Ribosomal protein L2, conserved site (IPR022671)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:16.71,23.97,7.05,8.99,6.34,14.24,14.84,8.12

Automatic updates:

Name:	NM_001250640 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L2-like (LOC100527286), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001289271 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 60S ribosomal protein L2, mitochondrial-like (LOC100792418), mRNA; nuclear gene for mitochondrial product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:30300835..30301134 (- strand)
Length:	300
Type:	three_prime_UTR

Position:	Chr06:30301135..30301652 (- strand)
Length:	518
Type:	CDS

Position:	Chr06:30302176..30302266 (- strand)
Length:	91
Type:	CDS

Position:	Chr06:30302267..30302336 (- strand)
Length:	70
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G170000.01 class=Sequence position=Chr06:30300835..30302336 (- strand)
TTTTCTTTAT ATAATTTACA ATCTGCTTTT GTAAGTTTAA GCAAATGAGC CCTGAATTTG TAGGCATTGC ATGTTTGAAA
TGGCTATGTC ACTGTGGAGA AGTCGCACTG CTTCATCAAC ACTCAACTTG TTAGCCAATA CTCTTCGCGG ATTCTCTTCT
GGTACATTCG TTTCTCCTTT AATACTCAGC AATAAGAACA TTAATTTCGT AGTATTTTGT AGCAAATGGA ACAAGACGAG
GAAAATATTG GAAAGAAGTC TCTGTTGCTT GGGGTTTCTT TTTATGACTG CTCTTCAGTT TAGTTCCACA GCTTTGCACA
AATGACTTGA TTGCTTTACA CCCTAACCTT ATTCTAATAA AGCCTTAGTC TTTTCAATGC TGTTTAATGG TGGCTTACGA
AATCATTCAT CTTAATAAAC ACTGTCAAAT CAAGCAATGG CCTTGTTCAT GCTCTACTTC AAGATAATGT TGTTTAAGGT
AGCATTGGGT ACACTAACCA AAGAAAATTT ATATGGGTTG CGTTTTAAAA TTAAAGAAAA CGGAAAGTGG GGTTTGAAAT
TTGTACATTT TATTTGGCCT ATGGGCTAAA TGCTATGCAA AATGGAAACT ATGGCTTCTA TGCTACCCCT GATTGCTTCT
TTCTCCATCG TTTAGTCACA TGTACTTGTT CTGCCTTTTC TCAGAGGTGA CAAACACTAG CGCTCAAAGA ACGCGAGAGA
GTATGATGAA TCAAATGGTG TATTCTGACA TAAACTCACG AATTGGGAGT TGCATGCCAC TGTCTGCAAT GCGAATTGGA
ACAATCATTC ACAACATTGA GTTGAACCCA GGGCAAGGTG GCAAGCTTGT CCGAGCTGCA GGAACCAGTG CAAAGATCTT
GAAAGAGCCC ACATCAGCAT ACTGTTTGAT CCAGATGCCC TCTGGTGTTA AAAAGTTAAT TGATTCTAGG TGTAGGGCCA
CCATTGGTGT TGTGTCTAAT CCAAGTCATG GAGATCGGAA GCTTAGGAAG GCTGGTCACA GCCGATGGCT TGGTCGACGA
CCCGTTGTTC GAGGAGTGGC AATGAATCCG GTAGATCATC CTCATGGAGG AGGAGAGGGT AAAAGCAAGA GTAGTGGAAA
ATGGGGGAAA GGATCTCGCA CTCCTTGGGG CAAGCCAACG AAGGGTGGCT ATAAGACAGG ACCCTTGAAG CGCAGAAGGT
AGTGGTAGTA TATACAACAT TCACTACCAG CTGCTTCTGA TGCTTAACAT GCTTGTAATA ATTTTGGAAA CTGTTAGAAA
ATTCATGGAA CTGATTAGAT TCAGTCAAAC TGTGCATGTT ATAGGTTCAA ATTTTGTTGT TGCTTAAGTA AAATGTTTTT
GCATTTTCTC TGAACTAGTC TTGCATTCAG CTTACACCCT CCATTGTTCA CACTGAGTTT TTCTTGACTG CCTATTATGC
TTTTATGAAT TGGTTTGGAT TAATTTTGTT GACTTGCTTA ATTGAGACAG CGGTTTTTTG TT

[show][hide][copy]TRANSCRIPT

>Vigan.06G170000.01
TTTTCTTTAT ATAATTTACA ATCTGCTTTT GTAAGTTTAA GCAAATGAGC CCTGAATTTG TAGGCATTGC ATGTTTGAAA
TGGCTATGTC ACTGTGGAGA AGTCGCACTG CTTCATCAAC ACTCAACTTG TTAGCCAATA CTCTTCGCGG ATTCTCTTCT
GAGGTGACAA ACACTAGCGC TCAAAGAACG CGAGAGAGTA TGATGAATCA AATGGTGTAT TCTGACATAA ACTCACGAAT
TGGGAGTTGC ATGCCACTGT CTGCAATGCG AATTGGAACA ATCATTCACA ACATTGAGTT GAACCCAGGG CAAGGTGGCA
AGCTTGTCCG AGCTGCAGGA ACCAGTGCAA AGATCTTGAA AGAGCCCACA TCAGCATACT GTTTGATCCA GATGCCCTCT
GGTGTTAAAA AGTTAATTGA TTCTAGGTGT AGGGCCACCA TTGGTGTTGT GTCTAATCCA AGTCATGGAG ATCGGAAGCT
TAGGAAGGCT GGTCACAGCC GATGGCTTGG TCGACGACCC GTTGTTCGAG GAGTGGCAAT GAATCCGGTA GATCATCCTC
ATGGAGGAGG AGAGGGTAAA AGCAAGAGTA GTGGAAAATG GGGGAAAGGA TCTCGCACTC CTTGGGGCAA GCCAACGAAG
GGTGGCTATA AGACAGGACC CTTGAAGCGC AGAAGGTAGT GGTAGTATAT ACAACATTCA CTACCAGCTG CTTCTGATGC
TTAACATGCT TGTAATAATT TTGGAAACTG TTAGAAAATT CATGGAACTG ATTAGATTCA GTCAAACTGT GCATGTTATA
GGTTCAAATT TTGTTGTTGC TTAAGTAAAA TGTTTTTGCA TTTTCTCTGA ACTAGTCTTG CATTCAGCTT ACACCCTCCA
TTGTTCACAC TGAGTTTTTC TTGACTGCCT ATTATGCTTT TATGAATTGG TTTGGATTAA TTTTGTTGAC TTGCTTAATT
GAGACAGCGG TTTTTTGTT

[show][hide][copy]CDS

>Vigan.06G170000.01
ATGTTTGAAA TGGCTATGTC ACTGTGGAGA AGTCGCACTG CTTCATCAAC ACTCAACTTG TTAGCCAATA CTCTTCGCGG
ATTCTCTTCT GAGGTGACAA ACACTAGCGC TCAAAGAACG CGAGAGAGTA TGATGAATCA AATGGTGTAT TCTGACATAA
ACTCACGAAT TGGGAGTTGC ATGCCACTGT CTGCAATGCG AATTGGAACA ATCATTCACA ACATTGAGTT GAACCCAGGG
CAAGGTGGCA AGCTTGTCCG AGCTGCAGGA ACCAGTGCAA AGATCTTGAA AGAGCCCACA TCAGCATACT GTTTGATCCA
GATGCCCTCT GGTGTTAAAA AGTTAATTGA TTCTAGGTGT AGGGCCACCA TTGGTGTTGT GTCTAATCCA AGTCATGGAG
ATCGGAAGCT TAGGAAGGCT GGTCACAGCC GATGGCTTGG TCGACGACCC GTTGTTCGAG GAGTGGCAAT GAATCCGGTA
GATCATCCTC ATGGAGGAGG AGAGGGTAAA AGCAAGAGTA GTGGAAAATG GGGGAAAGGA TCTCGCACTC CTTGGGGCAA
GCCAACGAAG GGTGGCTATA AGACAGGACC CTTGAAGCGC AGAAGGTAG

[show][hide][copy]PROTEIN

>Vigan.06G170000.01
MFEMAMSLWR SRTASSTLNL LANTLRGFSS EVTNTSAQRT RESMMNQMVY SDINSRIGSC MPLSAMRIGT IIHNIELNPG
QGGKLVRAAG TSAKILKEPT SAYCLIQMPS GVKKLIDSRC RATIGVVSNP SHGDRKLRKA GHSRWLGRRP VVRGVAMNPV
DHPHGGGEGK SKSSGKWGKG SRTPWGKPTK GGYKTGPLKR RR*