VIGGS:GBrowse

Vigan.06G154500.01

Basic Information:

Name:	Vigan.06G154500.01 Multiple alignment Variant Information
Position:	Chr06:28639350..28641778 (+ strand)
Length:	2429

Functional Information:

Description:	Similar to uncharacterized LOC101202853. [XP_004170381.1, Cucumis sativus]
InterPro:	Protein of unknown function DUF1068 (IPR010471)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:30.04,27.45,46.61,27.27,42.98,82.86,27.96,48.51

Automatic updates:

Name:	NM_001248775 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527412 (LOC100527412), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:28639350..28639569 (+ strand)
Length:	220
Type:	five_prime_UTR

Position:	Chr06:28639570..28639771 (+ strand)
Length:	202
Type:	CDS

Position:	Chr06:28640689..28640712 (+ strand)
Length:	24
Type:	CDS

Position:	Chr06:28641355..28641701 (+ strand)
Length:	347
Type:	CDS

Position:	Chr06:28641702..28641778 (+ strand)
Length:	77
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G154500.01 class=Sequence position=Chr06:28639350..28641778 (+ strand)
AAATCTGCGA AGAAAGAATG AAAGAAAAAA AAACATTAAA AATGGAGAAA GAAAAGGGAA GACAGAAGAG GAAGCAGTGT
GAACAATTTC TCAAAGTTTC CACTTTCGAC ATTGCCGACG GCCCCAAAAG ACACCATCAT TCGCTCCTTT TCTCTCACTA
GATTTCTTAT ATTTCTGTCT TCATTTGTGT TTGTGTGTGC CAAAGCACAG AGAGAGAAAG ATGGCTATGA ACCAATCAAA
GGCTGTGTTG CTGAGAGTGA GTTTGGTGGT GGTGGCTCTC TGCATAGCAG GATACATAGT GGGTCCCCCT CTCTACTGGC
ATTTCGTTGA AGGTTTGGCT GCAGTCAGCC ACTCTTCTCC TTCTGCTTGT GCCCCCTGCG TCTGTGATTG CTCTTCTCAA
CCTATTCTTT CCATTCCTCA AGGTCTTTCT CTGTTCTGTT TCAGATCTGA TTTCCTTAAT TACTCAATTA CCCGTTTCGT
GATCTTGCTA AAAAAATCAT CTTTTCTTAA TTGGGCGGAC TTTGGGCGAG TTTTTTGAGA TCTGGGTACT GTTGGTATTT
TTATTTTTAG TTTTGTTATA CTTGTGTAAG GTGGGTGTTA GCTCAATCGT TGAAGTTGAA TCATGAGTGC TTCAACTGAT
TTGAGCAAAT AATTCTTAAA CTTCTGGTTC TGTTTTCCGG GAATAGTGAT TTGATGAGAC GACAGTGTTG ATAAAACTTG
TCAAACGATG GTGCAGATGG GTTTGTTTCT TTAACTTTAT TGTGCTAGGG TTTTTGGTTT TTGCTTTGAG ACTTCAGTAG
ACCAGTGAAA AGTTACAGGT TTCAAACCTT TACATGAATC GCTTTTGATG GGACTTACTA TAACTGTTGT TAGAGCAACG
AAAACGGTGC GGTTTTGATG AATTGCTGAG AATAATTTGC TCTTGAACTT TCAAGTGGAT GTTAGTGCCT AAGAAACTTG
ATCTAGCTCT CCCCCTTCCT CATTACACTT TCCCATTGTT TTAAATTTGA TATTAAGAAT AAGTTATAAA GAAAGTGATT
GTCAATTGCA AGTTAAAAAC TGCGTGCATG TTGATCTGCA CTTTCACTGT CAAATTTATG AAACTACTTA CAACAAATAT
GAAACTAAGT ACCGTAACCT TGGGTTGCTA TTGTTTCCTT CGGTTATCAC TAATGAACTG ATAAATCCAC AATCATATTG
ATTGTAATTT CATTTTTTCG TACTGTTACA ACTATTATAG CTCTAATTGA GTGTCATCGT GATTCATATA GTGCTCACTT
CTCTTCATCT AATTGCAAAT TGAGCAGTAC TTATTCAGTT TCTTTCTGTG ATTCTGCAGG CCTGAGCAAC ACTTCCTTTG
GAGGTTGGTT TCGTCTCCTG GATGAACTAC CGCGAATTAT ATAATAATCC ATCTTCATCT TGATATACAT TTTTTCTATC
TAACACCTAT ATGACTGTAG AACTGTTGGA GTTGAAGTTA CAATGTTAAG TAACTTAAGT AGTAAGATAG CTATTATTAG
TTCTCATAAT TTAGGATCAT AAATTTCATG CATCACTCGC ATGTTTTTCC TTTGATTGTG AAAAGGAAAA GGAAAAATGT
TAATTATTGG CCTACTTTCA TGTTTAAAAC ATCCATTTTT CTTGAAGTAT GACCACTGTA GCTTTTTGTT TTGTTACCTT
TGTATTCATG TCAACTGCTT TCAGGCGACT TACATGATTG TGGATAGCAA ACTAAATAAT AACGCCAAAA TCCTTATTGT
ACTAAACTTT TCCTTAGGTT ACATGTTGCT TTATGATTCA TTGCCCACTT TAACAACAAA TTTTAATCTT GTACTGGATA
AGCCTCTACT AGAAAACAAC TTGAAAACTC AATGGCAGAA GTTGTCATCC AGCAGCAGCA GCAGCATTGT CACAAAACAT
GCTATATTCA TTTTTATTTT TATTTTGTGA TTTCAAGTAA CATTAACAGC TGCTTTTCCT TTTCTTGATT GGAACTGTTA
TTCAGATTGT GCAAAGTCTG ATCCAGAAGT GAGTGGAGAC ACTGAGAAAA ACTTTGCAGA GCTATTGACA GAGGAACTGA
AGCTGCGGGA GAACCAAGCC ATGGAAAATC AGCAACATGC TGACATGGCA CTGCTTGAGG CAAAGAAGTT TGCATCACAG
TATCAGAAGG AAGCTGACAA GTGCAATTCA GGGATGGAAA CTTGCGAAGA GGCTAGGGAG AAGTCTGAGT TGGCATTAGT
GGAGCAGAAG AAGCTAACTG CATTGTGGGA ACTTAGAGCA CGTCAGAAAG GTTGGAAAGA AGGGCTTGCC AAATCTCATG
CACGCTCTCA AGGAAAAGTG CAGAGTTCTT AGATACAGTA CATGCTTTCA TAATAGTTTT CAATACTGAT AATAGAAAAA
GCAAGTAATC CTGTCTCTCA CTTGTGTTT

[show][hide][copy]TRANSCRIPT

>Vigan.06G154500.01
AAATCTGCGA AGAAAGAATG AAAGAAAAAA AAACATTAAA AATGGAGAAA GAAAAGGGAA GACAGAAGAG GAAGCAGTGT
GAACAATTTC TCAAAGTTTC CACTTTCGAC ATTGCCGACG GCCCCAAAAG ACACCATCAT TCGCTCCTTT TCTCTCACTA
GATTTCTTAT ATTTCTGTCT TCATTTGTGT TTGTGTGTGC CAAAGCACAG AGAGAGAAAG ATGGCTATGA ACCAATCAAA
GGCTGTGTTG CTGAGAGTGA GTTTGGTGGT GGTGGCTCTC TGCATAGCAG GATACATAGT GGGTCCCCCT CTCTACTGGC
ATTTCGTTGA AGGTTTGGCT GCAGTCAGCC ACTCTTCTCC TTCTGCTTGT GCCCCCTGCG TCTGTGATTG CTCTTCTCAA
CCTATTCTTT CCATTCCTCA AGGCCTGAGC AACACTTCCT TTGGAGATTG TGCAAAGTCT GATCCAGAAG TGAGTGGAGA
CACTGAGAAA AACTTTGCAG AGCTATTGAC AGAGGAACTG AAGCTGCGGG AGAACCAAGC CATGGAAAAT CAGCAACATG
CTGACATGGC ACTGCTTGAG GCAAAGAAGT TTGCATCACA GTATCAGAAG GAAGCTGACA AGTGCAATTC AGGGATGGAA
ACTTGCGAAG AGGCTAGGGA GAAGTCTGAG TTGGCATTAG TGGAGCAGAA GAAGCTAACT GCATTGTGGG AACTTAGAGC
ACGTCAGAAA GGTTGGAAAG AAGGGCTTGC CAAATCTCAT GCACGCTCTC AAGGAAAAGT GCAGAGTTCT TAGATACAGT
ACATGCTTTC ATAATAGTTT TCAATACTGA TAATAGAAAA AGCAAGTAAT CCTGTCTCTC ACTTGTGTTT

[show][hide][copy]CDS

>Vigan.06G154500.01
ATGGCTATGA ACCAATCAAA GGCTGTGTTG CTGAGAGTGA GTTTGGTGGT GGTGGCTCTC TGCATAGCAG GATACATAGT
GGGTCCCCCT CTCTACTGGC ATTTCGTTGA AGGTTTGGCT GCAGTCAGCC ACTCTTCTCC TTCTGCTTGT GCCCCCTGCG
TCTGTGATTG CTCTTCTCAA CCTATTCTTT CCATTCCTCA AGGCCTGAGC AACACTTCCT TTGGAGATTG TGCAAAGTCT
GATCCAGAAG TGAGTGGAGA CACTGAGAAA AACTTTGCAG AGCTATTGAC AGAGGAACTG AAGCTGCGGG AGAACCAAGC
CATGGAAAAT CAGCAACATG CTGACATGGC ACTGCTTGAG GCAAAGAAGT TTGCATCACA GTATCAGAAG GAAGCTGACA
AGTGCAATTC AGGGATGGAA ACTTGCGAAG AGGCTAGGGA GAAGTCTGAG TTGGCATTAG TGGAGCAGAA GAAGCTAACT
GCATTGTGGG AACTTAGAGC ACGTCAGAAA GGTTGGAAAG AAGGGCTTGC CAAATCTCAT GCACGCTCTC AAGGAAAAGT
GCAGAGTTCT TAG

[show][hide][copy]PROTEIN

>Vigan.06G154500.01
MAMNQSKAVL LRVSLVVVAL CIAGYIVGPP LYWHFVEGLA AVSHSSPSAC APCVCDCSSQ PILSIPQGLS NTSFGDCAKS
DPEVSGDTEK NFAELLTEEL KLRENQAMEN QQHADMALLE AKKFASQYQK EADKCNSGME TCEEAREKSE LALVEQKKLT
ALWELRARQK GWKEGLAKSH ARSQGKVQSS *