VIGGS:GBrowse

Vigan.06G149700.01

Basic Information:

Name:	Vigan.06G149700.01 Multiple alignment Variant Information
Position:	Chr06:27943411..27945163 (- strand)
Length:	1753

Functional Information:

Description:	Similar to Transmembrane protein. [G7JVY4, Medicago truncatula]
InterPro:	Transmembrane protein 6/97 (IPR016964)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.76,9.43,5.23,1.68,13.99,11.70,7.50,6.59
Arabidopsis thaliana homolog:	AT2G32380.1

Automatic updates:

Name:	NM_001249778 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527741 (LOC100527741), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:27943411..27943739 (- strand)
Length:	329
Type:	three_prime_UTR

Position:	Chr06:27943740..27943919 (- strand)
Length:	180
Type:	CDS

Position:	Chr06:27944684..27945007 (- strand)
Length:	324
Type:	CDS

Position:	Chr06:27945008..27945163 (- strand)
Length:	156
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G149700.01 class=Sequence position=Chr06:27943411..27945163 (- strand)
TTTTTCTAAT GAAATAGAAG ATCATAGAAC ATAACGAAAA GAGTGTTGGG GAATTTGCAG GCTCCAAGAT CCCTCTTTTC
GTAAGAACCC TTTTCTCCTT GATCCTCCAA TCTTCATTCT TTGCCCTTTA GAGGCTTCAA ATCCGCGAAT CAACAAATGG
GTGTTGTGTT AAAGCTAGTA GACGCCATTC TGTTCCTGTT CTTCCTCGTG ATAGCAGTAG CTGCTCCTCT CATTGATGCT
CAAACATGTC TTCCTCTGAG TTATTTCCCT GAAATTCTTG TCCAACTCAA GGACCACTAC ACCCACGACT ATGGTGATTA
CCTTGTGGCT GAAAAGCCAC ACTTTTTTGT AGGTCTTGTG TGGCTTGAGC TTCTATTCCA ATGGCCCCTT GCACTCCTCA
ACCTCTATGC CATTCTCACT TCCAAGCCTT GGTTCAACAC CACTTGCTTG ATGTATGGTG TCTCTACCTC TACCTCCATG
GTAACCCTAT CATCTTTCTT TCTATCTATC TATATGTCTG TCAACTTTAA ATTCATATTT TACTTCTTCA AATTTTTTCC
CATTTTTTAT AATCCTATGA GCAGGACTGC AGAGAATACT TATTTTTCTT ACAGGGAAAA AGTTTCTACC TTTTTAATGG
CCCCTCTTTT TTATTTTTTG TATTTTGATT AATATGGTTG CATGTTTGTA TGGATCATGT GTTAATGTGA ACGATTATGC
TTCTGGGGGA AGACAGAAAA TGGATATTAT TCTCTTTTCT GATGTTTGGA TCTTTGGATC TAGAAAAGCT CTAACCTTTT
GGAGTTACTA GCGACCATTC AATTAGAACC AATGCACTCT TTGTTTACAG GGATCTGCTA TTATTGTTGG TTATTATTAC
TTTGTTCTAG CACGAAAAAA TGTCTTTTTG CAGCTGTTAG ATCATGTTGA ATTGATTACA TAGGTTGCTG TCTAAATATA
ATGAAAGCAA AATTTAGGCA ATGCAATTGT ATAGGTTCGA TTTTGATTTT AATCGGAAAC TATGGTCAAG ATGTATTGAG
TGGCTTTATA GGTTACTTGC TTAGGTGTTA ATTACACTTT GGTTAGAATT ATTGTTAAGT TGAAACTCTG AGAATGAGAA
AATATACAAT CATTTGACTT TTCACAAGGA TACTTGTTTC ACTGAAGATG GAGGTGTAAT ATTAGTCTTT GATCCAGCCA
TAGATGTGAG TAACAATGAG ACATTGGTTG TTTGTGGGTT GCAGGTCGCT ATATTATCAG AAATGATGAA TTCGAATAGG
GCATCTGATA AGCTATTAAC ACTGTATGCC TCTTTCATGG GTTTGGGTGC TCTGGCTCTG CTGCGAGGAT TGCTCACATG
TTCATCCAAA TCAACTTCAG CTCTAGGCAA AAGACCTGCA TTGATGAGGA AAAAGAGAGC TTGAAATTTT CAGGAATGAA
TCAAACGTGA GAAAATGGAA AGAGCATAAC CGTAGGTTTG AGGGGATGAA GAAGCATGCC AAGGACCCCT CATGAAAGCA
AATTTTCGTA TGTTTTTTAT TTAACTGAGT CCCCTTAGAC TTAATATCTG AGAAAAAGAT TTTGTATCAG GTGAACATCA
AATTCCATCA TGTTGCATAT TTGCTGACAT CTTTGCCATG AAAAGAAATA AAATTCTATC TACTTGGATT TGTTGTTTTT
AGCTCTTAAT ACACAAAAAT GATCATCACT GGTAGAGGAC CAGTTTCTAC TTGATATATA TGACTGTTTA GTT

[show][hide][copy]TRANSCRIPT

>Vigan.06G149700.01
TTTTTCTAAT GAAATAGAAG ATCATAGAAC ATAACGAAAA GAGTGTTGGG GAATTTGCAG GCTCCAAGAT CCCTCTTTTC
GTAAGAACCC TTTTCTCCTT GATCCTCCAA TCTTCATTCT TTGCCCTTTA GAGGCTTCAA ATCCGCGAAT CAACAAATGG
GTGTTGTGTT AAAGCTAGTA GACGCCATTC TGTTCCTGTT CTTCCTCGTG ATAGCAGTAG CTGCTCCTCT CATTGATGCT
CAAACATGTC TTCCTCTGAG TTATTTCCCT GAAATTCTTG TCCAACTCAA GGACCACTAC ACCCACGACT ATGGTGATTA
CCTTGTGGCT GAAAAGCCAC ACTTTTTTGT AGGTCTTGTG TGGCTTGAGC TTCTATTCCA ATGGCCCCTT GCACTCCTCA
ACCTCTATGC CATTCTCACT TCCAAGCCTT GGTTCAACAC CACTTGCTTG ATGTATGGTG TCTCTACCTC TACCTCCATG
GTCGCTATAT TATCAGAAAT GATGAATTCG AATAGGGCAT CTGATAAGCT ATTAACACTG TATGCCTCTT TCATGGGTTT
GGGTGCTCTG GCTCTGCTGC GAGGATTGCT CACATGTTCA TCCAAATCAA CTTCAGCTCT AGGCAAAAGA CCTGCATTGA
TGAGGAAAAA GAGAGCTTGA AATTTTCAGG AATGAATCAA ACGTGAGAAA ATGGAAAGAG CATAACCGTA GGTTTGAGGG
GATGAAGAAG CATGCCAAGG ACCCCTCATG AAAGCAAATT TTCGTATGTT TTTTATTTAA CTGAGTCCCC TTAGACTTAA
TATCTGAGAA AAAGATTTTG TATCAGGTGA ACATCAAATT CCATCATGTT GCATATTTGC TGACATCTTT GCCATGAAAA
GAAATAAAAT TCTATCTACT TGGATTTGTT GTTTTTAGCT CTTAATACAC AAAAATGATC ATCACTGGTA GAGGACCAGT
TTCTACTTGA TATATATGAC TGTTTAGTT

[show][hide][copy]CDS

>Vigan.06G149700.01
ATGGGTGTTG TGTTAAAGCT AGTAGACGCC ATTCTGTTCC TGTTCTTCCT CGTGATAGCA GTAGCTGCTC CTCTCATTGA
TGCTCAAACA TGTCTTCCTC TGAGTTATTT CCCTGAAATT CTTGTCCAAC TCAAGGACCA CTACACCCAC GACTATGGTG
ATTACCTTGT GGCTGAAAAG CCACACTTTT TTGTAGGTCT TGTGTGGCTT GAGCTTCTAT TCCAATGGCC CCTTGCACTC
CTCAACCTCT ATGCCATTCT CACTTCCAAG CCTTGGTTCA ACACCACTTG CTTGATGTAT GGTGTCTCTA CCTCTACCTC
CATGGTCGCT ATATTATCAG AAATGATGAA TTCGAATAGG GCATCTGATA AGCTATTAAC ACTGTATGCC TCTTTCATGG
GTTTGGGTGC TCTGGCTCTG CTGCGAGGAT TGCTCACATG TTCATCCAAA TCAACTTCAG CTCTAGGCAA AAGACCTGCA
TTGATGAGGA AAAAGAGAGC TTGA

[show][hide][copy]PROTEIN

>Vigan.06G149700.01
MGVVLKLVDA ILFLFFLVIA VAAPLIDAQT CLPLSYFPEI LVQLKDHYTH DYGDYLVAEK PHFFVGLVWL ELLFQWPLAL
LNLYAILTSK PWFNTTCLMY GVSTSTSMVA ILSEMMNSNR ASDKLLTLYA SFMGLGALAL LRGLLTCSSK STSALGKRPA
LMRKKRA*