GBrowse Details

Vigan.06G148900.01

Basic Information:
Name: Vigan.06G148900.01
Multiple alignment
Variant Information
Position: Chr06:27787881..27789789 (+ strand)
Length: 1909
Functional Information:
Description: Similar to protein translation factor SUI1 homolog isoform X2. [XP_004515084.1, Cicer arietinum]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor SUI1 (IPR001950)
Eukaryotic translation initiation factor SUI1 (IPR005874)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.24,0.00,1.48,1.08,0.42,0.56,0.80,0.79
Arabidopsis thaliana homolog: AT1G54290.1
Automatic updates:
Name: NM_001252722 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein translation factor SUI1 homolog (LOC100784390), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:27787881..27788266 (+ strand)
Length: 386
Type: five_prime_UTR
Position: Chr06:27788267..27788303 (+ strand)
Length: 37
Type: CDS
Position: Chr06:27788768..27788973 (+ strand)
Length: 206
Type: CDS
Position: Chr06:27789083..27789136 (+ strand)
Length: 54
Type: CDS
Position: Chr06:27789315..27789359 (+ strand)
Length: 45
Type: CDS
Position: Chr06:27789360..27789789 (+ strand)
Length: 430
Type: three_prime_UTR

>Vigan.06G148900.01 class=Sequence position=Chr06:27787881..27789789 (+ strand)
TGTTTTTATT GATGATTATG TGCACAGAAT TATGCAGATC TCATAACTTC CCTCCCTTTC TGGCCTATTT TATATTGGCC
TTTTTACTAT TGATGATGGT GAAATAAACA AATTTGTGTT TTCGGATGCA AATGTCGTAC TCATGAGACC ATAATTTGAG
AATTCTAAGG TGCGGTGGTA AGGTGATAAA AGTTGCTGTC TTTCTTGTTC ATATTTTGTC GGATGAGAAT TAGCAGTGAG
CATAAACACA AGAGTAGCAT CATCGAAAAT GTCAAACATC AAATCTCATA TCTGACTTGT AGTATATCTA ATTTCTGTTT
CCAGTGCTTG TTGATTAATT ACATCAGAAG GACTTTGCTT GTTACAAGTA ACCAAGGGCA ACTTTCATGT CTGAATTCGA
AACAAACATC CCAAGTGCTT TTGGTGGGTG TTGAATATCC TTGTTCATAT ATATATATAT ATATATATAT ATATATATAT
ATATATATAT ACTTTTTATG GCATAAAGAT ATTCTGTTAC ACTTTGTTTC CATGAATGAA TTTAGGAGAG TGTGATTGAA
TGAATTTGAG AGAATTTGGA GTAAACTTTT TGTTTTATTT GAGTGGATTT GGAAGTAAGT GAGAGTGAAT TTGGAAGTAA
AATTTTTTAA TCTGTCATAT CAATCAAATC TTATACTAAT TCTCACAAAC TTTACTTTCA AATCCACTCT CGGTTAGCTC
CAAATCTATT CAAATAAATA ACAAAAAATT TATCTTCAAA TTCTTTCAAA TCCATTTAAT CACTTTCTCC GAAATTCATT
TAAGTGAATA AAGCCTTAGT CTGAAACCAG AACGCAGCAC TTTATCAATG GTTTGCTCTC TGATGTGGTT TGAAAATTGA
AACATAGATC CCTTTGCTGA GGCAAATGCT GAGGACTCAG GTGCTGGGAC GAAAGAGTAT GTTCATGTTC GTGTACAACA
ACGTAACGGA AGGAAAAGCC TAACAACTGT TCAAGGATTA AAGAAAGAGT ATAGCTACAG CAAAATACTC AAAGACCTGA
AGAAAGAATT CTGCTGCAAT GGTACTGTTG TTCAAGACCC TGAGTTGGGC CAGGTTTGTG TGTTTCTGTT CATAAAAAAA
TTCCTCTTAT GTTACATGAT TTTCGACAAA TGCCATTGGT TGCATCATCT CTCATCATTC TTATCATATG TATCATATGT
AGGTTATACA ACTTCAGGGA GATCAAAGAA AGAATGTTTC TACTTTCCTT GTGCAGGTAG AGACACCCAG CAAAATTTTA
CAGACACTTT ACATTTCTTT TCTTTACAAA TACAAAAGTT AACTTTTTTT GATGACCAAA ATATCTTTAA ATTGACAACT
GGTGCAAAAT AAAAAAGCAT TTTCCAAAAT AGTATTGTGA TTGTATCTAA ATTCGTCTGT GATGTTACAA ACAGGCTGGC
ATAGTGAAGA AAGAACATAT CAAGCTTCAT GGTTTCTAAG ATCCAAGAAC AGTGGCATCA AGATTGAATA TGAGCATCAG
CTTCTTATAA ATCTGAATTC AAGCAATTTT TAGTGACATC AAGATTCTGT TATATCGTAG CTAGAGTCAT ATGTAATCTT
CTGTGGTATT GTTTACCTGT GTTCTGGAAA GTTACTGCTG AGGGATAAAT GGTAAGGATA ATGTCTATAT CTAAGACAAT
TGTCCTGAAT AAATTTGTGA TTATTCTTCC CTCTGCAAGT GACTCGGCCT TTTTGGTTGC ATTTTGTTTT TGGTCATTGA
CCTGCCAAAT TTTGTTAACT GATTGGGTTA ACTTGATAGA AACTGAGATA CACACCAACC TTAACCCTGC CTGCTACTGT
AAGAAACTGA GGGCAGAGTG AAAAGTCGGT AGAAGGTAAT TATAAAAATT GAATTTTTAT CTTTAGAAA

>Vigan.06G148900.01
TGTTTTTATT GATGATTATG TGCACAGAAT TATGCAGATC TCATAACTTC CCTCCCTTTC TGGCCTATTT TATATTGGCC
TTTTTACTAT TGATGATGGT GAAATAAACA AATTTGTGTT TTCGGATGCA AATGTCGTAC TCATGAGACC ATAATTTGAG
AATTCTAAGG TGCGGTGGTA AGGTGATAAA AGTTGCTGTC TTTCTTGTTC ATATTTTGTC GGATGAGAAT TAGCAGTGAG
CATAAACACA AGAGTAGCAT CATCGAAAAT GTCAAACATC AAATCTCATA TCTGACTTGT AGTATATCTA ATTTCTGTTT
CCAGTGCTTG TTGATTAATT ACATCAGAAG GACTTTGCTT GTTACAAGTA ACCAAGGGCA ACTTTCATGT CTGAATTCGA
AACAAACATC CCAAGTGCTT TTGATCCCTT TGCTGAGGCA AATGCTGAGG ACTCAGGTGC TGGGACGAAA GAGTATGTTC
ATGTTCGTGT ACAACAACGT AACGGAAGGA AAAGCCTAAC AACTGTTCAA GGATTAAAGA AAGAGTATAG CTACAGCAAA
ATACTCAAAG ACCTGAAGAA AGAATTCTGC TGCAATGGTA CTGTTGTTCA AGACCCTGAG TTGGGCCAGG TTATACAACT
TCAGGGAGAT CAAAGAAAGA ATGTTTCTAC TTTCCTTGTG CAGGCTGGCA TAGTGAAGAA AGAACATATC AAGCTTCATG
GTTTCTAAGA TCCAAGAACA GTGGCATCAA GATTGAATAT GAGCATCAGC TTCTTATAAA TCTGAATTCA AGCAATTTTT
AGTGACATCA AGATTCTGTT ATATCGTAGC TAGAGTCATA TGTAATCTTC TGTGGTATTG TTTACCTGTG TTCTGGAAAG
TTACTGCTGA GGGATAAATG GTAAGGATAA TGTCTATATC TAAGACAATT GTCCTGAATA AATTTGTGAT TATTCTTCCC
TCTGCAAGTG ACTCGGCCTT TTTGGTTGCA TTTTGTTTTT GGTCATTGAC CTGCCAAATT TTGTTAACTG ATTGGGTTAA
CTTGATAGAA ACTGAGATAC ACACCAACCT TAACCCTGCC TGCTACTGTA AGAAACTGAG GGCAGAGTGA AAAGTCGGTA
GAAGGTAATT ATAAAAATTG AATTTTTATC TTTAGAAA

>Vigan.06G148900.01
ATGTCTGAAT TCGAAACAAA CATCCCAAGT GCTTTTGATC CCTTTGCTGA GGCAAATGCT GAGGACTCAG GTGCTGGGAC
GAAAGAGTAT GTTCATGTTC GTGTACAACA ACGTAACGGA AGGAAAAGCC TAACAACTGT TCAAGGATTA AAGAAAGAGT
ATAGCTACAG CAAAATACTC AAAGACCTGA AGAAAGAATT CTGCTGCAAT GGTACTGTTG TTCAAGACCC TGAGTTGGGC
CAGGTTATAC AACTTCAGGG AGATCAAAGA AAGAATGTTT CTACTTTCCT TGTGCAGGCT GGCATAGTGA AGAAAGAACA
TATCAAGCTT CATGGTTTCT AA

>Vigan.06G148900.01
MSEFETNIPS AFDPFAEANA EDSGAGTKEY VHVRVQQRNG RKSLTTVQGL KKEYSYSKIL KDLKKEFCCN GTVVQDPELG
QVIQLQGDQR KNVSTFLVQA GIVKKEHIKL HGF*