GBrowse Details

Vigan.06G144400.01

Basic Information:
Name: Vigan.06G144400.01
Multiple alignment
Variant Information
Position: Chr06:27186131..27189034 (+ strand)
Length: 2904
Functional Information:
Description: Similar to Beta-amylase. [V7AI94, Phaseolus vulgaris]
GO: Biological Process: polysaccharide catabolic process (GO:0000272)
Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: beta-amylase activity (GO:0016161)
InterPro: Glycoside hydrolase, family 14B, plant (IPR001371)
Glycoside hydrolase, family 14 (IPR001554)
Glycoside hydrolase, catalytic domain (IPR013781)
Glycoside hydrolase, superfamily (IPR017853)
Glycoside hydrolase, family 14, conserved site (IPR018238)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.80,1.40,15.67,1.78,0.57,5.05,139.3 6,25.67
Arabidopsis thaliana homolog: AT2G32290.1, AT4G15210.1
Automatic updates:
Name: NM_001249318 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max beta-amylase (BMY1), mRNA.
PubMed ID: 9677422 NCBI(pubmed)
8011643 NCBI(pubmed)
8174545 NCBI(pubmed)
8334116 NCBI(pubmed)
8319688 NCBI(pubmed)
7763795 NCBI(pubmed)
1491009 NCBI(pubmed)
2474529 NCBI(pubmed)
2457058 NCBI(pubmed)
2430952 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:27186131..27186265 (+ strand)
Length: 135
Type: five_prime_UTR
Position: Chr06:27186266..27186325 (+ strand)
Length: 60
Type: CDS
Position: Chr06:27186434..27186832 (+ strand)
Length: 399
Type: CDS
Position: Chr06:27187331..27187495 (+ strand)
Length: 165
Type: CDS
Position: Chr06:27187605..27187868 (+ strand)
Length: 264
Type: CDS
Position: Chr06:27187944..27188153 (+ strand)
Length: 210
Type: CDS
Position: Chr06:27188267..27188506 (+ strand)
Length: 240
Type: CDS
Position: Chr06:27188611..27188763 (+ strand)
Length: 153
Type: CDS
Position: Chr06:27188764..27189034 (+ strand)
Length: 271
Type: three_prime_UTR

>Vigan.06G144400.01 class=Sequence position=Chr06:27186131..27189034 (+ strand)
CTTTCCTTTT CTTCTATAAA AACCCCCTTG CATTGTGACT TCGACAACCA GCAACTTCTA CGTAGCATCT CTTCTTTCTT
TTCCACAAAT ACCAGACAAC TCGGGCTTTT TCAAAAGAAA AACGCAACCA CGAACATGGT TACTTCAGAC AGAAGCATGT
TACAGAACTA CGTTCCAGTT TATGTTATGC TCCCAGTAAG TCATGCACAT GAACTAGTGT GTTTCTAAGC TACCCGTTTG
TTTTGTACGA GTATAGACGC TAATTATATC TTGTTTTCTT GTTTATCTTT GAAACTGCTG CAGCTAGGAG TTGTCACTGT
TGACAATGTT TTTGCAGACC CTAATGGCCT CAAAGAACGG CTTTTGAAGC TGAGAGCAAC AGGTATTGAT GGGGTTATGG
TTGATGTGTG GTGGGGGATC ATAGAACTGA GGGGGCCTAA GCAGTATGAT TGGAGAGCCT ATAGGAGCTT GTTTCATCTG
GTTCAGGAAT GTGGCTTGAA ACTTCAAGCT ATTATGTCAT TCCATCAGTG TGGAGGGAAT GTAGGAGATG TAGTTAACAT
CCCAATTCCC AAGTGGGTGC TCGACATTGG AGAATCTGAT CCTGATATCT TCTACACCAA CCGTTCAGGC ACAAGGAACA
AGGAGTATCT AACTATTGGT GTGGACGATA AGCCTATATT CCATGGAAGA ACAGCCATTG AGGTGAATGA ACTAAGAGAA
CTAAAATTAT CTTTCTTATA ACTAGCATTC TTGTTGTCAA CCCCGTAAGA AAAATTGCAA CTATGGTACG TATGAACGTA
TCATATGTAT ATTTTCCTTC CATAAATGCG TGTCATCGAA AAGAATTGAC CTGGTCTGCT TGATAATCTA TTTTCCATTA
AAATTAAGTA GAGTGTTATT AATACTGACA TGCTAAAAAA CAAGAAAACT AATTCAGTCT ATTAGGTTGA ACTTGTCTGT
TGTAGGTTTA ACTTGTATAA TCCTACTCCC AAAAGAGGCT AACTAAACGG AATCAGCCTT GCCACTCAAA AAAACAAAAG
AAGCATATTC ATTCTATGTG GGAGTTCAAG TCCTCATTGA GCAATAATTT ATTGTGTAAT AATAGGCTAG ACATGTTTCA
GATAGACTTC TACACGTCCA GATTTAGGAA CAATGATCTT GATTATTACA CAGCATGTTT AAACTTGTTA TTGTATGCAG
ATATACAGTG ACTACATGAA GAGTTTCAGA GAAAACATGT CAGACTTTTT AGAATCTGGG CTTATTATAG ACATTGAAGT
AGGGCTTGGC CCAGCAGGAG AGCTCAGATA TCCCTCTTAT CCACAAAGTC AAGGATGGCA GTTTCCTGGT ATTGGAGAAT
TTCAGGTGAG TCTGGTCTTA TCTTTCAAAA CAGAGTTGTT TCTCATCGAA ACTGGGATTT GTTGATTATT TGAACAACTG
AAGTATCATA AGAATGAAAT TCTGCAATAT GCAGTGCTAT GACAAATATT TGAAGGCAGA TTTCAAAGCA GCTGCAGCAA
GGGCTGGCCA TCCTGAATGG GAACTGCCAG ATGACGCAGG CCAGTACAAT GATGTTCCCG AATCTACTGG ATTCTTCAAA
TCAAATGGCA CGTATGTCAC TGAGAAAGGG AAGTTCTTCT TGACTTGGTA TTCAAACAAA TTGCTGAGTC ATGGTGATCA
AATCCTAGAG AAAGCCAACA AAGCATTCCT GGCCTGTAAA GTCAAATTAG CGATCAAAGT AAACTTCATA GAACCTCAAT
TAACAGTCTC CTTAATTTTC TACCAGATGA TTAACCTCTG ACCATGATGA CAGGTATCTG GAATCCACTG GTGGTACAAA
GTTGAAAATC ACGCAGCTGA GCTTACTGCT GGATATTACA ACCTTAATGA TAGAGACGGA TATCGTCCCA TTGCAAGAAT
GCTGTCTCGC CATCATGCCA TTTTGAACTT TACGTGTCTT GAGATGAGAG ACTCAGAACA AAGCTCAGAT GCCAAAAGTG
CACCACAGGA GCTCGTAATG CAGGTAATGC ATTAAATTTT TTGCAAGTTA AAAGATTGTT CTGTTTCTTA AAGATATTCT
CAAATGTAGA TGCTGTATTA TAGTGGTTAA ATTGCCAAAC ATGAACACAT GCACAGGTAC TGAGTGGAGG TTGGAGAGAA
GACATCCTAG TTGCTGGAGA AAATGCACTT CCAAGGTATG ATTCCACAGC ATACAACCAA ATCATACTGA ACGCAAGGCC
ACAAGGGGTC AACAAAAATG GCCCTCCAAA ACTAATGATG TTTGGAGTGA CATATCTTCG CCTATCAGAT GATCTACTGC
AACAATCAAA TTATGATACG TTCAAAAAAT TTGTGCTAAA GATGCATGCA GATCAGGTGA ACAGTCTTTA TTCATGTACT
TATAAGATGA TATTTTGTGA ACTTTCTTCA AATGCATAAC TACCTTGAAG ATTACTAATC CTGTTCCCCT AAAATTACAG
GGTTACAGTG AAGACCCTCA AAACTACAAT CATGTCATAA CTCCATTGAA GCCATCGGCA CCAAAGATTC CCATTGAGGT
TCTTCTTGAA GCGACTAAAC CAATACCGCC ATTCCCCTGG CTTCCAGAGA CAGATATGAA AATTGATGGC TGATTTCCCA
ATGGTGCTAA GAGTAGTTAA ATAATCTGCT GGAAATAATA GATACCGTTC AGGATATAAA TAAAGCACCC AGCCACCAAA
ATCAGCAGTA CTAATAATAA TAATGCCATG AAGTAGCAAT GTCTAGCTAG ACATATAGGC AGTACTCGCG TCTGTACTTT
TCATGTGTGT ATTCCTCCTA TATATAAAGT TAATAAACTA CTTTATCAAA CTTGCATCAA TGCTGCTTAT TGCAATCCAA
AAGTATCAGT CTCTAACATG TTGA

>Vigan.06G144400.01
CTTTCCTTTT CTTCTATAAA AACCCCCTTG CATTGTGACT TCGACAACCA GCAACTTCTA CGTAGCATCT CTTCTTTCTT
TTCCACAAAT ACCAGACAAC TCGGGCTTTT TCAAAAGAAA AACGCAACCA CGAACATGGT TACTTCAGAC AGAAGCATGT
TACAGAACTA CGTTCCAGTT TATGTTATGC TCCCACTAGG AGTTGTCACT GTTGACAATG TTTTTGCAGA CCCTAATGGC
CTCAAAGAAC GGCTTTTGAA GCTGAGAGCA ACAGGTATTG ATGGGGTTAT GGTTGATGTG TGGTGGGGGA TCATAGAACT
GAGGGGGCCT AAGCAGTATG ATTGGAGAGC CTATAGGAGC TTGTTTCATC TGGTTCAGGA ATGTGGCTTG AAACTTCAAG
CTATTATGTC ATTCCATCAG TGTGGAGGGA ATGTAGGAGA TGTAGTTAAC ATCCCAATTC CCAAGTGGGT GCTCGACATT
GGAGAATCTG ATCCTGATAT CTTCTACACC AACCGTTCAG GCACAAGGAA CAAGGAGTAT CTAACTATTG GTGTGGACGA
TAAGCCTATA TTCCATGGAA GAACAGCCAT TGAGATATAC AGTGACTACA TGAAGAGTTT CAGAGAAAAC ATGTCAGACT
TTTTAGAATC TGGGCTTATT ATAGACATTG AAGTAGGGCT TGGCCCAGCA GGAGAGCTCA GATATCCCTC TTATCCACAA
AGTCAAGGAT GGCAGTTTCC TGGTATTGGA GAATTTCAGT GCTATGACAA ATATTTGAAG GCAGATTTCA AAGCAGCTGC
AGCAAGGGCT GGCCATCCTG AATGGGAACT GCCAGATGAC GCAGGCCAGT ACAATGATGT TCCCGAATCT ACTGGATTCT
TCAAATCAAA TGGCACGTAT GTCACTGAGA AAGGGAAGTT CTTCTTGACT TGGTATTCAA ACAAATTGCT GAGTCATGGT
GATCAAATCC TAGAGAAAGC CAACAAAGCA TTCCTGGCCT GTAAAGTCAA ATTAGCGATC AAAGTATCTG GAATCCACTG
GTGGTACAAA GTTGAAAATC ACGCAGCTGA GCTTACTGCT GGATATTACA ACCTTAATGA TAGAGACGGA TATCGTCCCA
TTGCAAGAAT GCTGTCTCGC CATCATGCCA TTTTGAACTT TACGTGTCTT GAGATGAGAG ACTCAGAACA AAGCTCAGAT
GCCAAAAGTG CACCACAGGA GCTCGTAATG CAGGTACTGA GTGGAGGTTG GAGAGAAGAC ATCCTAGTTG CTGGAGAAAA
TGCACTTCCA AGGTATGATT CCACAGCATA CAACCAAATC ATACTGAACG CAAGGCCACA AGGGGTCAAC AAAAATGGCC
CTCCAAAACT AATGATGTTT GGAGTGACAT ATCTTCGCCT ATCAGATGAT CTACTGCAAC AATCAAATTA TGATACGTTC
AAAAAATTTG TGCTAAAGAT GCATGCAGAT CAGGGTTACA GTGAAGACCC TCAAAACTAC AATCATGTCA TAACTCCATT
GAAGCCATCG GCACCAAAGA TTCCCATTGA GGTTCTTCTT GAAGCGACTA AACCAATACC GCCATTCCCC TGGCTTCCAG
AGACAGATAT GAAAATTGAT GGCTGATTTC CCAATGGTGC TAAGAGTAGT TAAATAATCT GCTGGAAATA ATAGATACCG
TTCAGGATAT AAATAAAGCA CCCAGCCACC AAAATCAGCA GTACTAATAA TAATAATGCC ATGAAGTAGC AATGTCTAGC
TAGACATATA GGCAGTACTC GCGTCTGTAC TTTTCATGTG TGTATTCCTC CTATATATAA AGTTAATAAA CTACTTTATC
AAACTTGCAT CAATGCTGCT TATTGCAATC CAAAAGTATC AGTCTCTAAC ATGTTGA

>Vigan.06G144400.01
ATGGTTACTT CAGACAGAAG CATGTTACAG AACTACGTTC CAGTTTATGT TATGCTCCCA CTAGGAGTTG TCACTGTTGA
CAATGTTTTT GCAGACCCTA ATGGCCTCAA AGAACGGCTT TTGAAGCTGA GAGCAACAGG TATTGATGGG GTTATGGTTG
ATGTGTGGTG GGGGATCATA GAACTGAGGG GGCCTAAGCA GTATGATTGG AGAGCCTATA GGAGCTTGTT TCATCTGGTT
CAGGAATGTG GCTTGAAACT TCAAGCTATT ATGTCATTCC ATCAGTGTGG AGGGAATGTA GGAGATGTAG TTAACATCCC
AATTCCCAAG TGGGTGCTCG ACATTGGAGA ATCTGATCCT GATATCTTCT ACACCAACCG TTCAGGCACA AGGAACAAGG
AGTATCTAAC TATTGGTGTG GACGATAAGC CTATATTCCA TGGAAGAACA GCCATTGAGA TATACAGTGA CTACATGAAG
AGTTTCAGAG AAAACATGTC AGACTTTTTA GAATCTGGGC TTATTATAGA CATTGAAGTA GGGCTTGGCC CAGCAGGAGA
GCTCAGATAT CCCTCTTATC CACAAAGTCA AGGATGGCAG TTTCCTGGTA TTGGAGAATT TCAGTGCTAT GACAAATATT
TGAAGGCAGA TTTCAAAGCA GCTGCAGCAA GGGCTGGCCA TCCTGAATGG GAACTGCCAG ATGACGCAGG CCAGTACAAT
GATGTTCCCG AATCTACTGG ATTCTTCAAA TCAAATGGCA CGTATGTCAC TGAGAAAGGG AAGTTCTTCT TGACTTGGTA
TTCAAACAAA TTGCTGAGTC ATGGTGATCA AATCCTAGAG AAAGCCAACA AAGCATTCCT GGCCTGTAAA GTCAAATTAG
CGATCAAAGT ATCTGGAATC CACTGGTGGT ACAAAGTTGA AAATCACGCA GCTGAGCTTA CTGCTGGATA TTACAACCTT
AATGATAGAG ACGGATATCG TCCCATTGCA AGAATGCTGT CTCGCCATCA TGCCATTTTG AACTTTACGT GTCTTGAGAT
GAGAGACTCA GAACAAAGCT CAGATGCCAA AAGTGCACCA CAGGAGCTCG TAATGCAGGT ACTGAGTGGA GGTTGGAGAG
AAGACATCCT AGTTGCTGGA GAAAATGCAC TTCCAAGGTA TGATTCCACA GCATACAACC AAATCATACT GAACGCAAGG
CCACAAGGGG TCAACAAAAA TGGCCCTCCA AAACTAATGA TGTTTGGAGT GACATATCTT CGCCTATCAG ATGATCTACT
GCAACAATCA AATTATGATA CGTTCAAAAA ATTTGTGCTA AAGATGCATG CAGATCAGGG TTACAGTGAA GACCCTCAAA
ACTACAATCA TGTCATAACT CCATTGAAGC CATCGGCACC AAAGATTCCC ATTGAGGTTC TTCTTGAAGC GACTAAACCA
ATACCGCCAT TCCCCTGGCT TCCAGAGACA GATATGAAAA TTGATGGCTG A

>Vigan.06G144400.01
MVTSDRSMLQ NYVPVYVMLP LGVVTVDNVF ADPNGLKERL LKLRATGIDG VMVDVWWGII ELRGPKQYDW RAYRSLFHLV
QECGLKLQAI MSFHQCGGNV GDVVNIPIPK WVLDIGESDP DIFYTNRSGT RNKEYLTIGV DDKPIFHGRT AIEIYSDYMK
SFRENMSDFL ESGLIIDIEV GLGPAGELRY PSYPQSQGWQ FPGIGEFQCY DKYLKADFKA AAARAGHPEW ELPDDAGQYN
DVPESTGFFK SNGTYVTEKG KFFLTWYSNK LLSHGDQILE KANKAFLACK VKLAIKVSGI HWWYKVENHA AELTAGYYNL
NDRDGYRPIA RMLSRHHAIL NFTCLEMRDS EQSSDAKSAP QELVMQVLSG GWREDILVAG ENALPRYDST AYNQIILNAR
PQGVNKNGPP KLMMFGVTYL RLSDDLLQQS NYDTFKKFVL KMHADQGYSE DPQNYNHVIT PLKPSAPKIP IEVLLEATKP
IPPFPWLPET DMKIDG*