GBrowse Details

Vigan.06G134000.01

Basic Information:
Name: Vigan.06G134000.01
Multiple alignment
Variant Information
Position: Chr06:25795177..25798605 (+ strand)
Length: 3429
Functional Information:
Description: Similar to Uncharacterized protein. [H9TN46, Glycine max]
GO: Biological Process: sexual reproduction (GO:0019953)
Cellular Component: extracellular region (GO:0005576)
InterPro: Major pollen allergen Lol pI (IPR005795)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.15,14.06,1.60,9.79,8.18,5.61,13.57
Arabidopsis thaliana homolog: AT4G28250.1
Automatic updates:
Name: NM_001258009 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-B3-like (EXPB4), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001267069 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max expansin-B3-like (EXPB7), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:25795177..25795389 (+ strand)
Length: 213
Type: five_prime_UTR
Position: Chr06:25795390..25795564 (+ strand)
Length: 175
Type: CDS
Position: Chr06:25796120..25796420 (+ strand)
Length: 301
Type: CDS
Position: Chr06:25796876..25797005 (+ strand)
Length: 130
Type: CDS
Position: Chr06:25797991..25798185 (+ strand)
Length: 195
Type: CDS
Position: Chr06:25798186..25798605 (+ strand)
Length: 420
Type: three_prime_UTR

>Vigan.06G134000.01 class=Sequence position=Chr06:25795177..25798605 (+ strand)
CCTTTCGTAA ATAACACCAA ATGAATGGAC CACATCGTAA ACACGGTTAC GCCTGTTGTA CTATAAGAAA CCCAAAACTC
CTTTTAACTG TCTAACTAAA CTAAGCCCAC AGACACTCAC CACTCTGCCG CCACCACACT GTCGGCAACG CCCCAAACGC
CACTCTTTCG TTCCAACCGC CTCGGCGCGC CACCCACTTT GCTTCTGTGC ACAATGCAGC TACACCGTGC CTCCACCGCG
GCAAAAGGCC TTGCCTGCTT CATTTTTGCC TTGAAACTCG TGCTGTTGTA CGCCGCCGAG GGACAGCCTC AGCACCGCGG
TCCCGACCTA CATTGGTACC CCGGAACCGC CACCTGGTAC GGCGACCCCG AAGGAGACGG AAGCACCGGT AAATGACCTT
CACAAGATCT CTTCTTTCCA CATTTCACTC ACTAACACAC AAACACACTT CACTCGCCGA GTTAACTCAG TGAATACAAA
TGCAGAGACA TAAAGACAAA ATTTAGATTC TTATCTATTT AGGTGAAATC TTAATTTTAA CTAAAAGTTA CAAAATTTAG
ATATAATTTT TTTGAGATTT GGTATGAGTA CAACAATTTA GTCTTTTCAT CTCTTTCTTA ATTGCACAAG TTATTGTCCA
ATTAGTTTAT CTAAGTGCTT TGCTTTCAAT TCTGTTCTTA GTTAAAACGT AAGTTTCAGT TTGGAAATTC GCAGATAAAG
GTATGCATAA CTTGTTTACA TAGAAATTTC TTAATCTGAC TGAGAAACAG TAAATACATA TCTGTTTCAA CCTCTATGGC
AGTTTTAGGT TCTTTATCCA AGCGATAAAA ACTTGTAGAG TTTGGTAAAA GTTTTGGTGA AAAAGCTTAC AGATTTTGGT
TATGTGGAGT GAGTGTTGTG TTGGGTTAAT GATGAGTTTG TAGTGTTAAT GTTGTGTGTG AAGGTGGGGC ATGTGGGTAT
GGTTCGATGG TGGATGTGAA GCCGTTCAGG GCGCGAGTGG GAGCAGTGGG GCCCTTGCTG TTCATGAACG GCGAAGGGTG
CGGTGCCTGT TACAAGGTGA GGTGTTTGGA CAAGAGCATA TGTTCGAGAC GAGCTGTGAC AGTAATAATT ACCGACGAGT
GCCCAGGTTG CCCCTCTGAC CAAACACACT TCGATCTCAG TGGTGCCGCC TTTGGTCGCA TGGCCATTGC TGGCGAGAAC
GGTCCTCTCA GAGACCGTGG TCAAATCCCT GTCATTTACC GAAGGTATGC ATATGCATGC ATTATGCTTT ACAAACATTA
AATTTCACAT GTGAAATTTT TTTAGTGATT TACAGCTATA TATATACACA TATATGTAAG TGTGAATCTG AACATTGTTC
AGTTGATTAT ATTACTTTAT TTGGGGCAGA GGGACCTTGT TATGTGGCAT GGACTCTTTG ACTGTGACTG GGACCGTTTT
TTCCTTCTTT TGTTTGGTGT GAAGATTTGA CTTTTTTTAC TGTTTTTCTA ACTTATATTA TTAACCCAGC TTCCCTTTAG
AGGAAAAAAG GTTACTCTCT GTTTGCACTT TCCTGTTTGT TTCTATATAT CAGGATGCTA CATTATCTGC ATCCGAGTGA
AATGCCCTTT TGTTTTTGTG GATTCATTAA GGGAAAGGCT CGTTTTAAAT ATCAATTTCT GATGAGTGAG GTTTGTCCTC
TGGTTGTATT ATTTTGCAGA ACACCGTGTA AATATCCCGG TAGAAAAATT GCTTTTCATG TCAACGAAGG CTCCACACCA
TTTTGGCTAT CACTTCTGGT TGAGTTTGAG GACGCAGAAG GAGATATTGG CTCCATGCAT ATACGAGAAG TATGCATTTT
TCCTCTCTTC TCTATACTTA TTTCCACTGA TACATAACTT TTTATGCTCT ATCTATGTTC CTCATGCATC ACAAAATTTA
TATTTTTATA TAAGTTGTAG AAAGAAAGAG TAAAAAATAA TGCACGAAAG AAGAATCTTA AAGTTCTGGT CTCAGAGAAT
CAGATGCCGT TACAGCTAAT GGCCTGTAAT GTGGTAGTGC GAAATATATT GTTAATATAT AGTTTTATGG CTAGAGAGCA
CACTTGGTTT ATTTTTACCA ATAATAAAGT GCAACCGGAG GGTAATATAT TGATTGCATC TTTGGAACCA GCTTCTTGAA
AAGTGTTGCA GATTGGACCA AAAGTAACTA CCCAAAGGTG AAATAAAGCA TTATGGTCAT TACATTTTTT TTACTGTCTA
GTCTCCCTTG TGCAGAGTTT GACAATTCCA AATTTTGGGG ACGTGTCTCC TTACCACACG TGCCTCAACA CTACCATCTT
TTGCACTTTA GGAGTAATAG GTTTTTGCCA AAGCTTGCAA TTGGTGGAAC ATCTTCCCTC CTATTAAATA TATTATCACA
GCCTTATTCC TCATATGCAT CATGGTGCCC ATTGGCAACA TCTAATGGTG CTGCTTTTTC TGTATTTTCT GAACTCAAAG
CATGTGATAT GGGACCAATG TAAACAGTAA CATTCCTCAT TTCTCCCCAC TCTATGAATT CAGGAACTAA ATTGCCAAAA
CAAGTTACAC AGTGAAGTGT TGCTTTGATC TCTATTTGTA GACAAATTAT TAAATAGTGC ATATACTGTA ATTCCTCACA
TAGTAAGTTG GTGCGAAAAG TTAGGCTTAT AACTTTATTC TTAATTATTT GGTAACACTA TTGTTGTTGG AAGTCTATCC
CGAGTAGATA TAAGATGAGT TTGCATACAG ACTTTATTTT ATAAGTCTAT TTTATGACAT TGAGTGAGGT TTAAAATCTA
CTTTTCTTTC GCAGTCGGGA TCTACAGAAT GGCTGCAAAT GAATCACCTC TGGGGTGCAA ATTGGTGCAT TATTGGGGGA
CCTTTAAGAG GACCATTCTC AGTGAAATTG AGCTCTTCCA CTGGTAGAAG CCTCTCTGCA AGAGATGTTA TTCCGGGAAG
TTGGGTTCCA AAGGCGACTT ACACTTCTCG GCTAAATTTC TACCCTTAGT CACAAGCTTT TGATGAAACT AATGAATACA
TTTGAAGCAG TTAAAAGTTG GTGATGTCCC ATAACTCAAA AGTAGTCTCC ATGGGCCTCC AACTCTCTTT TTCTTCCCTT
TGTTTGCTAT ATATACATTA GTTTCTCTTC TTTTTTGATG AGAAAAGTAG CCATTTGGAG TGCACAAGGG CATCCAATGG
GGCTTCTGCT TTCTTATTTT TTTGAATATT GATTTTGTAT ACCTACTTTT GTGGTGTGTT GTAACAGTTG GTAGTAAATG
TGTGTAATGT GGCCATCTCC AAATTGGAGA GAGAGCTTGT AGCTTTGTAA TTCCTAATGT GTGTAGTGGT CCCATTGGTG
TTTTAATGGA CATTTATTAT TGAATGTTTT AACTTTGATG TCATTGTCTC GTGATAAACT CTACATTGT

>Vigan.06G134000.01
CCTTTCGTAA ATAACACCAA ATGAATGGAC CACATCGTAA ACACGGTTAC GCCTGTTGTA CTATAAGAAA CCCAAAACTC
CTTTTAACTG TCTAACTAAA CTAAGCCCAC AGACACTCAC CACTCTGCCG CCACCACACT GTCGGCAACG CCCCAAACGC
CACTCTTTCG TTCCAACCGC CTCGGCGCGC CACCCACTTT GCTTCTGTGC ACAATGCAGC TACACCGTGC CTCCACCGCG
GCAAAAGGCC TTGCCTGCTT CATTTTTGCC TTGAAACTCG TGCTGTTGTA CGCCGCCGAG GGACAGCCTC AGCACCGCGG
TCCCGACCTA CATTGGTACC CCGGAACCGC CACCTGGTAC GGCGACCCCG AAGGAGACGG AAGCACCGGT GGGGCATGTG
GGTATGGTTC GATGGTGGAT GTGAAGCCGT TCAGGGCGCG AGTGGGAGCA GTGGGGCCCT TGCTGTTCAT GAACGGCGAA
GGGTGCGGTG CCTGTTACAA GGTGAGGTGT TTGGACAAGA GCATATGTTC GAGACGAGCT GTGACAGTAA TAATTACCGA
CGAGTGCCCA GGTTGCCCCT CTGACCAAAC ACACTTCGAT CTCAGTGGTG CCGCCTTTGG TCGCATGGCC ATTGCTGGCG
AGAACGGTCC TCTCAGAGAC CGTGGTCAAA TCCCTGTCAT TTACCGAAGA ACACCGTGTA AATATCCCGG TAGAAAAATT
GCTTTTCATG TCAACGAAGG CTCCACACCA TTTTGGCTAT CACTTCTGGT TGAGTTTGAG GACGCAGAAG GAGATATTGG
CTCCATGCAT ATACGAGAAT CGGGATCTAC AGAATGGCTG CAAATGAATC ACCTCTGGGG TGCAAATTGG TGCATTATTG
GGGGACCTTT AAGAGGACCA TTCTCAGTGA AATTGAGCTC TTCCACTGGT AGAAGCCTCT CTGCAAGAGA TGTTATTCCG
GGAAGTTGGG TTCCAAAGGC GACTTACACT TCTCGGCTAA ATTTCTACCC TTAGTCACAA GCTTTTGATG AAACTAATGA
ATACATTTGA AGCAGTTAAA AGTTGGTGAT GTCCCATAAC TCAAAAGTAG TCTCCATGGG CCTCCAACTC TCTTTTTCTT
CCCTTTGTTT GCTATATATA CATTAGTTTC TCTTCTTTTT TGATGAGAAA AGTAGCCATT TGGAGTGCAC AAGGGCATCC
AATGGGGCTT CTGCTTTCTT ATTTTTTTGA ATATTGATTT TGTATACCTA CTTTTGTGGT GTGTTGTAAC AGTTGGTAGT
AAATGTGTGT AATGTGGCCA TCTCCAAATT GGAGAGAGAG CTTGTAGCTT TGTAATTCCT AATGTGTGTA GTGGTCCCAT
TGGTGTTTTA ATGGACATTT ATTATTGAAT GTTTTAACTT TGATGTCATT GTCTCGTGAT AAACTCTACA TTGT

>Vigan.06G134000.01
ATGCAGCTAC ACCGTGCCTC CACCGCGGCA AAAGGCCTTG CCTGCTTCAT TTTTGCCTTG AAACTCGTGC TGTTGTACGC
CGCCGAGGGA CAGCCTCAGC ACCGCGGTCC CGACCTACAT TGGTACCCCG GAACCGCCAC CTGGTACGGC GACCCCGAAG
GAGACGGAAG CACCGGTGGG GCATGTGGGT ATGGTTCGAT GGTGGATGTG AAGCCGTTCA GGGCGCGAGT GGGAGCAGTG
GGGCCCTTGC TGTTCATGAA CGGCGAAGGG TGCGGTGCCT GTTACAAGGT GAGGTGTTTG GACAAGAGCA TATGTTCGAG
ACGAGCTGTG ACAGTAATAA TTACCGACGA GTGCCCAGGT TGCCCCTCTG ACCAAACACA CTTCGATCTC AGTGGTGCCG
CCTTTGGTCG CATGGCCATT GCTGGCGAGA ACGGTCCTCT CAGAGACCGT GGTCAAATCC CTGTCATTTA CCGAAGAACA
CCGTGTAAAT ATCCCGGTAG AAAAATTGCT TTTCATGTCA ACGAAGGCTC CACACCATTT TGGCTATCAC TTCTGGTTGA
GTTTGAGGAC GCAGAAGGAG ATATTGGCTC CATGCATATA CGAGAATCGG GATCTACAGA ATGGCTGCAA ATGAATCACC
TCTGGGGTGC AAATTGGTGC ATTATTGGGG GACCTTTAAG AGGACCATTC TCAGTGAAAT TGAGCTCTTC CACTGGTAGA
AGCCTCTCTG CAAGAGATGT TATTCCGGGA AGTTGGGTTC CAAAGGCGAC TTACACTTCT CGGCTAAATT TCTACCCTTA
G

>Vigan.06G134000.01
MQLHRASTAA KGLACFIFAL KLVLLYAAEG QPQHRGPDLH WYPGTATWYG DPEGDGSTGG ACGYGSMVDV KPFRARVGAV
GPLLFMNGEG CGACYKVRCL DKSICSRRAV TVIITDECPG CPSDQTHFDL SGAAFGRMAI AGENGPLRDR GQIPVIYRRT
PCKYPGRKIA FHVNEGSTPF WLSLLVEFED AEGDIGSMHI RESGSTEWLQ MNHLWGANWC IIGGPLRGPF SVKLSSSTGR
SLSARDVIPG SWVPKATYTS RLNFYP*