GBrowse Details

Vigan.06G122400.01

Basic Information:
Name: Vigan.06G122400.01
Multiple alignment
Variant Information
Position: Chr06:23778417..23782295 (- strand)
Length: 3879
Functional Information:
Description: Similar to OPA3-like protein-like. [XP_006469062.1, Citrus sinensis]
InterPro: Optic atrophy 3-like (IPR010754)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.16,9.38,2.37,2.39,2.93,2.78,2.32,2.62
Automatic updates:
Name: NM_001251816 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527103 (LOC100527103), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:23778417..23778661 (- strand)
Length: 245
Type: three_prime_UTR
Position: Chr06:23778662..23779201 (- strand)
Length: 540
Type: CDS
Position: Chr06:23781703..23781837 (- strand)
Length: 135
Type: CDS
Position: Chr06:23781942..23782073 (- strand)
Length: 132
Type: CDS
Position: Chr06:23782074..23782295 (- strand)
Length: 222
Type: five_prime_UTR

>Vigan.06G122400.01 class=Sequence position=Chr06:23778417..23782295 (- strand)
ATCAATTTCG CAAACTTCGC GAAGGTTTTC GAATATGAAT AAGTACTAAT TTTTTTCCTT TTTACTTTTC CGGTACCTTG
TTCTGTTCTG AGCAGACCAT CTTCTTGTTA AGCAAGAAAG ATACGGTGAT GAAATACGGT CGTGGATCAC ACGCACCCAA
CAGAGGTTCC AAATTCGCTT CCCTGTTATC AACTTCGTAG CTCACTTTCC TATTCTCGAG AGATGGTGGT GCTTCCCGTG
GTGAAGCTGG CAACACTCGC CCTCAAAACC GCGTGTAAAC CAATCGCCAG CAGGCTCAAG AAGGAGGCCG GTTACCACCC
TAAGTTTCGC AGCTTCATAA TCGCCATTGC CCAGGTCCCA CTTTTCTTTC TCCCTCCCGC ACGTGTCTTA TTTCCGTTTT
CACACTCGCA CGTGGGTTAT TCTGTGCTGT GTGTGACTCT GGTTCTTCCT TGGCTCAGGC CAATCACAGA TTGACGACGA
GAGTGCAGAG AAGAATCTAC GGTCGTGCCA CCGATGTTGC AATCCGTCCT TTGAACGAGG AGAAGGCTGT GCAAGCTGCT
GCGGATTTGC TTGGAGAACT CTTTGTGTTC TCGGTAATGA TAACATAACG TTTTCCTGCT TCATGTTGTG CTTCATACCA
TTACTATCAT GTTCGTTATG TGTCGAGCAT TGTCTTCAAC CTGTTTGTGT GTTTTACTGT TTTGATCATC ACTGAATTCT
GATAGAAGGA AATCCCACTT TGATTAGTGA TAACGCTAAA ATAGCATTTA CGTGATTGAC AAATCTTGAG GTATTTTTGG
ATAAACTTTT TCATAAAGAG AAAAAGAAAA ATTATATATA GACTAAAAGT AATTTATATA TAAGTTAGAA AATAGAAACA
CTAATATGAT ATATTTTTGT AAATTAAATT ATATATAAGT TAATTTTATT TTATGGAGAA ACTAATTTCG TTTTTCTTTC
TTATTTTGTT CTTCAATACA TCTATGTGAA ATTTATAGAA ACATACTCTT AGATCAAGAA TTAACTTTTT AATTGAGTTT
GGTTCAAGTT CAAATTATTA GACAGTGCCG AAACTTATCA GTGTGGTTGT TGTATGGCAT ATCGTTTTCT TTTTTATTAG
GTTATTCTCA ATTTTAGAAA TTTCACGCTT GCAATATTCT TCGGTATAGT ATGTATACAG TTCAATGGAC ATGTTCCCCC
ATTGTTTTAA GACTTTTTCT CAGACTAGTT CGACTCAGTT GAAAGGTACT AAAGTCTGGT CAACGATTGT TTCTACCAAC
TATAGAAATT GGGTTGTGTT AATTCGACCT TAGGTTCAAC ATATCAGTTA CTTGTTCCCA ATTCCTTGGT ATCGGTATAG
TACATATGGG TAAGGGGCAA TCCTTACCCA TTAGCTAGTT GGGTCTAGTT GTGAAAGTAT GGTTCTCGAC CCCTACATAC
GGAAACACTA TGAATTCCAC TATAAATTCT AATTTATATA TATATATATA TATATATATA TATATATATA TATATATATA
TATATATTTC TAATAAGAGC ACTCTGGACC AATGTTGAAG ATCTTTTGAC TACCATTTGA ATCTGTACAA ATGACACTTC
TGTTCATTAA ACTGATTGAC CCTTTAGATA GTTGTTTGAA AAGTTTTCCT TTAAAAGTAC AGAAGGGATA ACTTATGTTA
TGGAAGAGTC GGTTCACCTT CTTTCAAACT TTGCAGGACA TATATAAAAC TTCATAGAAA TAAAAGATCA AATAGTTTGT
GTGCATTTTT TCCCGTGTTT GTTTTCATAT TGAAAGATGA ATTCCCAGTT TGGTTAGCTT TGATCCAAGT AGAGATGAGA
TAATCTGTCC CGTATTTAGT CCCTTCAAAA GGAATATGTT ATAACCCCTT TGTCAGATTA GGGTTTTTAA CTCTTTCAGA
GTTTAGTTTT CAGTTATTTG GTTTGTAACA AATATGTTGT TTGGGTTATA AAAACCCTAA CTTTTGATAG TAATGGTAAG
TAGAAATATT CAGATTACTG TGTTGAAAAT TGTGCAGTGT TACCTGAGTT CAGGCAGTAT TAGCCGTGAG TTGTGTCGTT
GCACTGCTGT AAGGAAAGGA GGCAGTGGGA AAATTGATAG AATAGGTTGT AATCACGTGA AGAGGTGGAA ACGGTGAAAG
ATTGTGACTG GAAGAGGTGG AAAAGGTTGA AGACAGTCAA TTGAAGGAAG AGAGTGACAA AGGAAATTCA GTATAAAGAA
GGAGACCGTT ACAGAATACC ATTAGTGAAT GCTAGCCGTA TATGGCAGGG AAAGCTACTG TTCCTTAAAT ATATGCACAA
GGTACTGGGA ATTGAATTAA TAGATTTGAC TTGTGCAGAG ACACCTTGGA TGAATATTTT GTTGGGAAGG TCTCAGCTCC
TCAATATTAG ACGTTCGTTC AATTCATTGC CCAAAAATTC GGTCATATTA GCTTGCTTTT TATTGCCTCT GGTATTAAAT
TGAGTTATGG TTAATTCTAG GATGTTTTAA GAGAATGCTT GTGTACTTTT CAATTTACTC CCACGAAGCA CCTAAGCCAA
ATAGAGCCAT TCTATGAAAA GCTGTCTATG GCCTGTGTGT ATGTTTTTGC CATTGTCTAA AAGTATTTAT AAACTTGTGT
AGGCTAGGTT CTTAATGGAC TTCCCTTGTC TAATAGAAGA GAAGAAAAAG ATTTAAACCA GAAAATGAGA TTTGAATTAT
ATTATTTGAG TGTGTGAAAG AGTCCTCTAC GATCAAAGTT GTTCTGATTT TAAAAACTAC TAGGCTTTGT ATGTATTAAC
CAACAAATAT CTGTCTGAAT GGTAGCATCC AAGATTACTG TCGACCATAT GAAGATTGTG ATTTGATAAC CAATGTGAAC
AACTTGTTTG ACTTTTAATC CCATTTCATT TTTGTGATTT TAAAAGAATA TTGCAAATAT ATACGTACGA AGTTCTTACC
ATAAAATTGT AGAATTTCCA CTTTCTTTCA TCCATCTGTG CATCTATCTT TGTATCTGCC ATCACCAATT TGTCTTCCTC
ATAACATAAA ACAGGAGTTT TTGCACAACA TAAATTTAAT TTCCTTCTAT TTAGGTTGCT GGAGCTGCTG TCATTTTTGA
GGTGCAAAGA AGTTCAAGAG CAGAAGCAAG AAAGGAAGAA ATACGTAGAC AGGAAATACA GGTTGTCTTT CTGCCTTCTC
TGTTATGGAT GATCCTTTGT GAGGGTGAAA AGTTGAGGGA TTCATTGAAG AAAAGTTGGT CTTGTAATCA AATATTTTCT
CTGAATGCTA TCAAGGATGG AGGTTTAAAT TTGGATTTTT GCCATCTCAT CTACGCTATA CTTTTACCAA CCTATCTATT
TAGTCTTGTT TACTTTCATT GGAATTGGAG GAAAAAGTTA TTGGGGGACC AAAAATATTC TAAATCTCAT GGACGTACTC
AAGTTTTTGT GACTTTGCAC TTTTGCAGGC AATACAGACG AGGAATGAAG AGTTGGCTAG AGAAATGGAA CTTCTTGCAC
ACAAACTTGA AAAGCTGGAA CAACTTTCTA GAGGCCGAGG ATTATTTGGC ACTCTTAACT TCGGACCCAC TCATGTCTCC
GAAAATACAA AATCCAATTG ATTGCTGCAA CTAAGCATTG ACCACAGATT TTGTTAAACA AACCATTGCT CTTGGTTTGG
AAAGGAAACA TAACTGATAA AATAGCAGAA CACATAAATT CTGCCTGCTA ATTACAATTT TCTAGGCTTT GGATGATCTA
TACATATGTT TCCTCCAAAA TTTTGTTCAT CCTCATGGTA GCTCAAATGA TATTGTAATT TGTAGCAATT GTCTGATATT
CTATAAAACA AATACAAATC AGATACAAGT TGTTTCCTT

>Vigan.06G122400.01
ATCAATTTCG CAAACTTCGC GAAGGTTTTC GAATATGAAT AAGTACTAAT TTTTTTCCTT TTTACTTTTC CGGTACCTTG
TTCTGTTCTG AGCAGACCAT CTTCTTGTTA AGCAAGAAAG ATACGGTGAT GAAATACGGT CGTGGATCAC ACGCACCCAA
CAGAGGTTCC AAATTCGCTT CCCTGTTATC AACTTCGTAG CTCACTTTCC TATTCTCGAG AGATGGTGGT GCTTCCCGTG
GTGAAGCTGG CAACACTCGC CCTCAAAACC GCGTGTAAAC CAATCGCCAG CAGGCTCAAG AAGGAGGCCG GTTACCACCC
TAAGTTTCGC AGCTTCATAA TCGCCATTGC CCAGGCCAAT CACAGATTGA CGACGAGAGT GCAGAGAAGA ATCTACGGTC
GTGCCACCGA TGTTGCAATC CGTCCTTTGA ACGAGGAGAA GGCTGTGCAA GCTGCTGCGG ATTTGCTTGG AGAACTCTTT
GTGTTCTCGG TTGCTGGAGC TGCTGTCATT TTTGAGGTGC AAAGAAGTTC AAGAGCAGAA GCAAGAAAGG AAGAAATACG
TAGACAGGAA ATACAGGTTG TCTTTCTGCC TTCTCTGTTA TGGATGATCC TTTGTGAGGG TGAAAAGTTG AGGGATTCAT
TGAAGAAAAG TTGGTCTTGT AATCAAATAT TTTCTCTGAA TGCTATCAAG GATGGAGGTT TAAATTTGGA TTTTTGCCAT
CTCATCTACG CTATACTTTT ACCAACCTAT CTATTTAGTC TTGTTTACTT TCATTGGAAT TGGAGGAAAA AGTTATTGGG
GGACCAAAAA TATTCTAAAT CTCATGGACG TACTCAAGTT TTTGTGACTT TGCACTTTTG CAGGCAATAC AGACGAGGAA
TGAAGAGTTG GCTAGAGAAA TGGAACTTCT TGCACACAAA CTTGAAAAGC TGGAACAACT TTCTAGAGGC CGAGGATTAT
TTGGCACTCT TAACTTCGGA CCCACTCATG TCTCCGAAAA TACAAAATCC AATTGATTGC TGCAACTAAG CATTGACCAC
AGATTTTGTT AAACAAACCA TTGCTCTTGG TTTGGAAAGG AAACATAACT GATAAAATAG CAGAACACAT AAATTCTGCC
TGCTAATTAC AATTTTCTAG GCTTTGGATG ATCTATACAT ATGTTTCCTC CAAAATTTTG TTCATCCTCA TGGTAGCTCA
AATGATATTG TAATTTGTAG CAATTGTCTG ATATTCTATA AAACAAATAC AAATCAGATA CAAGTTGTTT CCTT

>Vigan.06G122400.01
ATGGTGGTGC TTCCCGTGGT GAAGCTGGCA ACACTCGCCC TCAAAACCGC GTGTAAACCA ATCGCCAGCA GGCTCAAGAA
GGAGGCCGGT TACCACCCTA AGTTTCGCAG CTTCATAATC GCCATTGCCC AGGCCAATCA CAGATTGACG ACGAGAGTGC
AGAGAAGAAT CTACGGTCGT GCCACCGATG TTGCAATCCG TCCTTTGAAC GAGGAGAAGG CTGTGCAAGC TGCTGCGGAT
TTGCTTGGAG AACTCTTTGT GTTCTCGGTT GCTGGAGCTG CTGTCATTTT TGAGGTGCAA AGAAGTTCAA GAGCAGAAGC
AAGAAAGGAA GAAATACGTA GACAGGAAAT ACAGGTTGTC TTTCTGCCTT CTCTGTTATG GATGATCCTT TGTGAGGGTG
AAAAGTTGAG GGATTCATTG AAGAAAAGTT GGTCTTGTAA TCAAATATTT TCTCTGAATG CTATCAAGGA TGGAGGTTTA
AATTTGGATT TTTGCCATCT CATCTACGCT ATACTTTTAC CAACCTATCT ATTTAGTCTT GTTTACTTTC ATTGGAATTG
GAGGAAAAAG TTATTGGGGG ACCAAAAATA TTCTAAATCT CATGGACGTA CTCAAGTTTT TGTGACTTTG CACTTTTGCA
GGCAATACAG ACGAGGAATG AAGAGTTGGC TAGAGAAATG GAACTTCTTG CACACAAACT TGAAAAGCTG GAACAACTTT
CTAGAGGCCG AGGATTATTT GGCACTCTTA ACTTCGGACC CACTCATGTC TCCGAAAATA CAAAATCCAA TTGATTGCTG
CAACTAA

>Vigan.06G122400.01
MVVLPVVKLA TLALKTACKP IASRLKKEAG YHPKFRSFII AIAQANHRLT TRVQRRIYGR ATDVAIRPLN EEKAVQAAAD
LLGELFVFSV AGAAVIFEVQ RSSRAEARKE EIRRQEIQVV FLPSLLWMIL CEGEKLRDSL KKSWSCNQIF SLNAIKDGGL
NLDFCHLIYA ILLPTYLFSL VYFHWNWRKK LLGDQKYSKS HGRTQVFVTL HFCRQYRRGM KSWLEKWNFL HTNLKSWNNF
LEAEDYLALL TSDPLMSPKI QNPIDCCN*