VIGGS:GBrowse

Vigan.06G121600.01

Basic Information:

Name:	Vigan.06G121600.01 Multiple alignment Variant Information
Position:	Chr06:23606487..23609864 (+ strand)
Length:	3378

Functional Information:

Description:	Similar to Uncharacterized protein. [I1KEV3, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:21.65,11.25,9.35,9.44,16.66,28.10,22.18,14.68
Arabidopsis thaliana homolog:	AT5G60860.1

Automatic updates:

Name:	NM_001317491 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA1f (LOC100781889), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:23606487..23606752 (+ strand)
Length:	266
Type:	five_prime_UTR

Position:	Chr06:23606753..23606973 (+ strand)
Length:	221
Type:	CDS

Position:	Chr06:23609035..23609467 (+ strand)
Length:	433
Type:	CDS

Position:	Chr06:23609468..23609864 (+ strand)
Length:	397
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G121600.01 class=Sequence position=Chr06:23606487..23609864 (+ strand)
GGAAGCAAAG CCATTTTGAT TGTTATCATT GTTTGATATC ATTCATTCCA TTCTTTCTTT GAATGCTTCT CCCTCCATAC
CCTTCTGCCA TTACAACATC AACAACATTA ACACCATCCT TTTTCTCTCT CTTCTTCATT TCCAATGCTG AAACTTGCAG
GGTTCATAGA CACTGACCCA ATTGAATTCC CGCAAGAGAA TTGAAGAAAA AACCATCAAG TGAGGATCTT TTGAAGGCAC
GGATCGCGTG AGAAGGAAGA GGGAAAATGG GTGCGTATAG AGCGGACGAT GATTACGACT ACTTGTTCAA GGTGGTGTTG
ATCGGAGACT CCGGCGTTGG GAAATCGAAC CTCTTGTCTC GATTCACGAA GAACGAATTC AGTTTGGAAT CTAAATCCAC
CATTGGCGTT GAATTCGCCA CCCGCAGCAT CCACGTCGAT GACAAGATCG TAAAGGCGCA AATTTGGGAC ACCGCGGGCC
AAGAAAGGTC ACTGCTTTTT CTATTTTTTG TCTTTTTCGA CGTTTGGAAA GGATTTGTTT CCTATTGTGA ACGTAACCAA
GATTTTAAAA TTTCGTGAAA AAAAAAACGC GTTTATGTTT AATGGGTAAA TATGTTTCGA AAGTGATTGT TCAGATGATT
TTGGGACGGA ACTATTTCAT TTCATCTCAT ATCAGATTTC TATTTTTTTT TTTTTACGGA TTTGAACGAG GGGAACGAAA
ATAAATATGC AACAAAAGAA AGAAACAGAC TGGAAAAGAT CGTTTTTCTT TTGGCACATA AATATTGAAT TTTTAGTATT
TTTTTTCTTT GGTTTTTCTT CAATTTAGAT TTCTAACTTT TCCTTTGATT GTCTTCCCAC CCTAGCAAAC ATAGGGTATG
GTTGGTTGTT TGATGATTGG GGCTGCATTG GGTGGACCAT AGTTTTGTGG GGGTTTGATT AAAGTTTAAT GTGTTTTGTT
ATTTTTTTTT TATAATGGTT TGTGATTTGA TTTGGCAATG ATGAATTATG CAGGTAACAT GGGATTTTGA TCGAACTTTT
TATTTTTTTG TATCTTTAAG TATGCAAGCA TGAGATTATT CATTGAGCTT TTTGTTATAG GATGGAGAAT GTTGCTATTT
CATGCTATTT ATGGTACTGT GTATGGGTAT TCTGAAATTA ATGAAAATCA TGAAATTGAT GAATTTAAAA AGTAATGAAA
TGGGTTTAAG ATTGTTTTGT TTCCCCTTTG TGTTGGTTTC AAGGTTGCTG GGGGAGGGAT ATAGTTGTTC TGTGGATGAA
TTATTGAAGA ATGGTCCAAA ATTTTAGAGT ATAAATGTAT GTCTGTAATA ATGGATGAGT GTGAAAATGT CTATTGCTTC
CAGATCCATT GATTCTTACA AAATCTTCAT TTCTTTCTTT GATCTGACTC CTTTAAAGTG AGTAACTCAT TTCAGAATAT
AAAATAATAT TAATTGTTTA TCAGGAAAAT TAAATGTTGA TATTATTACA TATGCATGCA TAACAAATTA TGTGCATGCT
ATCAACATTG AAATGACTTA CTTTACCATT GCTCCCTTCA GAGAAAGTCA TTTTAGAAAT TATAGTGGGA AGATGACAGA
ACAGCTTGAC TTCTCAAGTT TGGCTTGCTT TATTTGGTTC CGTATGTCAG GCACTTTTTT GAAATGAAAT GAGACTGAGA
TTTTGTATGT GACTGATTAA ATCTAAAGTA TGACTGTTTC ACATTTTCTG AGAAATATTT AATGAGGTGG AATATGGTAG
CTGTATGAAG TGTGTTGTAG GACAAGGATA ATTATTTCTA TCTGGGAGTG TGATTTAATG TGATCCTTTG GTTAGGTTTT
ATTTGCCAAC GAGAATGGTA TACTATACAC ATGCACAAAA TGGTGCAACA CAGTAATAGT GGAAAGGTGC CAGTTTTGGC
TGTATTAAAT ATAGCAACAA CCACCAAACT TTGTCACACA AGATGTATAG GAAGCCAATC CATTTTAGTC CCCAAAAGGT
AGAAGTAACT TCAAATTTGG ATTCTCTGCT CTTTTTTTGG CTGTCATCTG CTGTGTCTTT AAAATACATT GATTTTAATG
TTTTAAAGTA GATTAAAAAT CTTTTTAATA TATCAAAAGT AGTGTATTTT AACAGCAGAA GACAGCACAA AAAAACCTTG
GCCCTTTAAA GAAAATTAAT GTCTAGTTCT TCAGTAACGA ATAGTTTCAT TAATATGGTC CCTACAACTA CATTTGACAT
TAATTCAGTC TCTTAATTGT AGAAGTTAAT ATCAATTTAG TCCATTAACA GCAGAAAATG ACATCAATCT AGCTCTGCAA
TCTCAGTATG TATTTGATAT CAATTTTCAT GATTGAGAAG GGACTAACAT TATGTCAAAC TTAAAAGAAG CTGAAAGATT
CAATGTTTTT TCAAGACACT TCTACAATGA TTTTTTTTGT AACATAGCTT TACTTTGAAG TCTACACTGG CAATGATTTT
TGTCTATGAG ATGGTGATTC CATCATAATG CTGCACATAT CAGGTCTGAT TTTTGGTATT TCCCACAGAT ATCGTGCAAT
CACAAGCGCG TATTATCGAG GGGCCGTTGG AGCATTGCTT GTGTATGATG TTACCAGACA TGTGACTTTT GAAAACGTGG
AGAGATGGTT AAAGGAGCTT CGTGATCACA CAGATGCAAA CATTGTAATC ATGCTGGTAG GGAACAAGGC GGATCTGCGC
CACCTACGAG CGGTGGCGAC GGACGACGCG AAGGCATTCG CCGAGCGAGA AAACACATTC TTCATGGAAA CATCTGCTCT
TGAGTCGTTG AATGTTGACA ATGCCTTCAC AGAAGTTCTG ACTCAGATAT ATCGTGTTGT TAGTAGGAAG ACTCTTGAGA
TTGGAGATGA CCCTGCAGCG TTGCCTAAGG GCCAGACCAT CAATGTTGGC TCCAAGGATG ATGTCTCAGC TGTCAAAAAG
GCTGGATGCT GCTCTGCATA ATTTCACAAC CCTTTTGCAC CACAATGCTA TATCTATTTC TGCATGATGA TTCAACCAAC
CAAGTGAAAG CTACTTACAC TTATCTTTTT ATGTAATTTC TCCCTCATAT CTTGCCAAGT TTGTTGTTTT CTTTTTTCTC
TCTTTTCTTT TCATGTAAGC ATGGTTTGTT CATAGGAATG ATGTCATGTT GCCCTTAGAT ATACACAGAA TTTGCTGTTT
TGTATTGAGT GAAAGCTACA TCTGGTTCTT AGATTGATTG ATTGATTCAG AATCTGTTAC AATCTCATCA TTCTTTCTCA
AAGTTTCCGT TCCACTGGAA CAAGACATAA ACTTTGATAG ATAGTTAGTG TTATTCAATC CTGAAAGAGT TATGGCTTCT
TGATATGACA GCATTTCA

[show][hide][copy]TRANSCRIPT

>Vigan.06G121600.01
GGAAGCAAAG CCATTTTGAT TGTTATCATT GTTTGATATC ATTCATTCCA TTCTTTCTTT GAATGCTTCT CCCTCCATAC
CCTTCTGCCA TTACAACATC AACAACATTA ACACCATCCT TTTTCTCTCT CTTCTTCATT TCCAATGCTG AAACTTGCAG
GGTTCATAGA CACTGACCCA ATTGAATTCC CGCAAGAGAA TTGAAGAAAA AACCATCAAG TGAGGATCTT TTGAAGGCAC
GGATCGCGTG AGAAGGAAGA GGGAAAATGG GTGCGTATAG AGCGGACGAT GATTACGACT ACTTGTTCAA GGTGGTGTTG
ATCGGAGACT CCGGCGTTGG GAAATCGAAC CTCTTGTCTC GATTCACGAA GAACGAATTC AGTTTGGAAT CTAAATCCAC
CATTGGCGTT GAATTCGCCA CCCGCAGCAT CCACGTCGAT GACAAGATCG TAAAGGCGCA AATTTGGGAC ACCGCGGGCC
AAGAAAGATA TCGTGCAATC ACAAGCGCGT ATTATCGAGG GGCCGTTGGA GCATTGCTTG TGTATGATGT TACCAGACAT
GTGACTTTTG AAAACGTGGA GAGATGGTTA AAGGAGCTTC GTGATCACAC AGATGCAAAC ATTGTAATCA TGCTGGTAGG
GAACAAGGCG GATCTGCGCC ACCTACGAGC GGTGGCGACG GACGACGCGA AGGCATTCGC CGAGCGAGAA AACACATTCT
TCATGGAAAC ATCTGCTCTT GAGTCGTTGA ATGTTGACAA TGCCTTCACA GAAGTTCTGA CTCAGATATA TCGTGTTGTT
AGTAGGAAGA CTCTTGAGAT TGGAGATGAC CCTGCAGCGT TGCCTAAGGG CCAGACCATC AATGTTGGCT CCAAGGATGA
TGTCTCAGCT GTCAAAAAGG CTGGATGCTG CTCTGCATAA TTTCACAACC CTTTTGCACC ACAATGCTAT ATCTATTTCT
GCATGATGAT TCAACCAACC AAGTGAAAGC TACTTACACT TATCTTTTTA TGTAATTTCT CCCTCATATC TTGCCAAGTT
TGTTGTTTTC TTTTTTCTCT CTTTTCTTTT CATGTAAGCA TGGTTTGTTC ATAGGAATGA TGTCATGTTG CCCTTAGATA
TACACAGAAT TTGCTGTTTT GTATTGAGTG AAAGCTACAT CTGGTTCTTA GATTGATTGA TTGATTCAGA ATCTGTTACA
ATCTCATCAT TCTTTCTCAA AGTTTCCGTT CCACTGGAAC AAGACATAAA CTTTGATAGA TAGTTAGTGT TATTCAATCC
TGAAAGAGTT ATGGCTTCTT GATATGACAG CATTTCA

[show][hide][copy]CDS

>Vigan.06G121600.01
ATGGGTGCGT ATAGAGCGGA CGATGATTAC GACTACTTGT TCAAGGTGGT GTTGATCGGA GACTCCGGCG TTGGGAAATC
GAACCTCTTG TCTCGATTCA CGAAGAACGA ATTCAGTTTG GAATCTAAAT CCACCATTGG CGTTGAATTC GCCACCCGCA
GCATCCACGT CGATGACAAG ATCGTAAAGG CGCAAATTTG GGACACCGCG GGCCAAGAAA GATATCGTGC AATCACAAGC
GCGTATTATC GAGGGGCCGT TGGAGCATTG CTTGTGTATG ATGTTACCAG ACATGTGACT TTTGAAAACG TGGAGAGATG
GTTAAAGGAG CTTCGTGATC ACACAGATGC AAACATTGTA ATCATGCTGG TAGGGAACAA GGCGGATCTG CGCCACCTAC
GAGCGGTGGC GACGGACGAC GCGAAGGCAT TCGCCGAGCG AGAAAACACA TTCTTCATGG AAACATCTGC TCTTGAGTCG
TTGAATGTTG ACAATGCCTT CACAGAAGTT CTGACTCAGA TATATCGTGT TGTTAGTAGG AAGACTCTTG AGATTGGAGA
TGACCCTGCA GCGTTGCCTA AGGGCCAGAC CATCAATGTT GGCTCCAAGG ATGATGTCTC AGCTGTCAAA AAGGCTGGAT
GCTGCTCTGC ATAA

[show][hide][copy]PROTEIN

>Vigan.06G121600.01
MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHVT FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAVATDD AKAFAERENT FFMETSALES
LNVDNAFTEV LTQIYRVVSR KTLEIGDDPA ALPKGQTINV GSKDDVSAVK KAGCCSA*