GBrowse Details

Vigan.06G104900.01

Basic Information:
Name: Vigan.06G104900.01
Multiple alignment
Variant Information
Position: Chr06:19785969..19787152 (+ strand)
Length: 1184
Functional Information:
Description: Similar to early nodulin-like protein 1-like. [XP_004505446.1, Cicer arietinum]
GO: Molecular Function: copper ion binding (GO:0005507)
Molecular Function: electron carrier activity (GO:0009055)
InterPro: Plastocyanin-like (IPR003245)
Cupredoxin (IPR008972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.95,2.35,37.69,12.92,3.19,16.86,24.65,54.09
Automatic updates:
Name: NM_001255447 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max early nodulin-like protein (LOC100781182), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:19785969..19786050 (+ strand)
Length: 82
Type: five_prime_UTR
Position: Chr06:19786051..19786252 (+ strand)
Length: 202
Type: CDS
Position: Chr06:19786502..19786944 (+ strand)
Length: 443
Type: CDS
Position: Chr06:19786945..19787152 (+ strand)
Length: 208
Type: three_prime_UTR

>Vigan.06G104900.01 class=Sequence position=Chr06:19785969..19787152 (+ strand)
ATCTCTCCAA CCAACTTTTC TAGCATTTGG GTTGCAAATT GCAATACCAA CTTTCCATTT GCAAAATCTT TGAGATCTTC
CAATGGCCAC ATTCATCTTT AGGTCTAACA AAGCAGTGCA TGCCTTTGTT GGCTGTCTTT GTCTTCTGCT GATGGTTCAA
AAGGGTGCTT CCTATGATTT TGTAGTTGGT GGCCAAAAGG GTTGGAGTGT TCCCAATGAT CCCACTTTCA ATCCTTTCAA
TCAATGGGCA GAAAAGAGCC GTTTTCAAGT TGGAGACTCC CTTGGTGAGC TTTCTTCATT CAATCTATGC TTCCTATTTT
TTACACAGTT TAACATTTCA CTTTAGATCA TCCAATTGAT ATACTTCTAC TTTGACTTTG GTTAATGATT CTTATATTCT
TTTGTCCCAA ATCAACCTTT TCAATATATG TATAACTTTG ATAATCTGAT ATACGTTGCA AAAATCAGAG TACAAAACCA
GTATGTCACC ATCAACACTA GTTATTAAAC TTTAAAATAT ATGGGTATTG CAGTGTTCAA CTACCAATCT GGCCAAGACT
CAGTGCTGTA TGTAAAGAGT GAAGACTATG CGAGCTGCAA CACCGATTCA CCTTATTCAA AATTCTCTGA TGGCCATACA
GTCTTCAAGC TAGACAAATC AGGGCCTCAC TTTTTCATAA GTGGAAGCAA AGACAACTGC CTGAAAAATG AAAAGTTAAC
AGTGATTGTG CTTGCTGAAA GGAACAAAAA CAGCAACCAA AGCACCAATG CTTCTCCACC TTCACCACAA TCATCATCTT
CATCACCACC ACCTACTACT GGGCAAGAGG GTCAATCTCC AACTTCAGAC ACAAACCAAA CACCAAGCCC TGTTAGTGAA
CCTCCACCTC CCAATGCTGC TGCTTCAGCC TTTCTCTCTC TTGCTGGCTC TGTTGGAGCA TTCATGGTTT CAGTCATCAT
GCTTTTATCT TTCTAAGAAT TTATGAGTGG TTGAGGATTG ATTTCGTCTT TTTTTTTCTT TTCCATACAA TTCTTTTTTA
TTTTTTCATT TTTCTGTTCT TTGTTTCCTA TGCTTTGAGG TAAGAACTAC TGAACTTGCT GGTCTTTGGT TCAAAGTTGG
GATGTTTGAT ATATATTTGT GAAGATTGAA TAATAATAAT AATGAGCTGA CAGTGATTGA TTTA

>Vigan.06G104900.01
ATCTCTCCAA CCAACTTTTC TAGCATTTGG GTTGCAAATT GCAATACCAA CTTTCCATTT GCAAAATCTT TGAGATCTTC
CAATGGCCAC ATTCATCTTT AGGTCTAACA AAGCAGTGCA TGCCTTTGTT GGCTGTCTTT GTCTTCTGCT GATGGTTCAA
AAGGGTGCTT CCTATGATTT TGTAGTTGGT GGCCAAAAGG GTTGGAGTGT TCCCAATGAT CCCACTTTCA ATCCTTTCAA
TCAATGGGCA GAAAAGAGCC GTTTTCAAGT TGGAGACTCC CTTGTGTTCA ACTACCAATC TGGCCAAGAC TCAGTGCTGT
ATGTAAAGAG TGAAGACTAT GCGAGCTGCA ACACCGATTC ACCTTATTCA AAATTCTCTG ATGGCCATAC AGTCTTCAAG
CTAGACAAAT CAGGGCCTCA CTTTTTCATA AGTGGAAGCA AAGACAACTG CCTGAAAAAT GAAAAGTTAA CAGTGATTGT
GCTTGCTGAA AGGAACAAAA ACAGCAACCA AAGCACCAAT GCTTCTCCAC CTTCACCACA ATCATCATCT TCATCACCAC
CACCTACTAC TGGGCAAGAG GGTCAATCTC CAACTTCAGA CACAAACCAA ACACCAAGCC CTGTTAGTGA ACCTCCACCT
CCCAATGCTG CTGCTTCAGC CTTTCTCTCT CTTGCTGGCT CTGTTGGAGC ATTCATGGTT TCAGTCATCA TGCTTTTATC
TTTCTAAGAA TTTATGAGTG GTTGAGGATT GATTTCGTCT TTTTTTTTCT TTTCCATACA ATTCTTTTTT ATTTTTTCAT
TTTTCTGTTC TTTGTTTCCT ATGCTTTGAG GTAAGAACTA CTGAACTTGC TGGTCTTTGG TTCAAAGTTG GGATGTTTGA
TATATATTTG TGAAGATTGA ATAATAATAA TAATGAGCTG ACAGTGATTG ATTTA

>Vigan.06G104900.01
ATGGCCACAT TCATCTTTAG GTCTAACAAA GCAGTGCATG CCTTTGTTGG CTGTCTTTGT CTTCTGCTGA TGGTTCAAAA
GGGTGCTTCC TATGATTTTG TAGTTGGTGG CCAAAAGGGT TGGAGTGTTC CCAATGATCC CACTTTCAAT CCTTTCAATC
AATGGGCAGA AAAGAGCCGT TTTCAAGTTG GAGACTCCCT TGTGTTCAAC TACCAATCTG GCCAAGACTC AGTGCTGTAT
GTAAAGAGTG AAGACTATGC GAGCTGCAAC ACCGATTCAC CTTATTCAAA ATTCTCTGAT GGCCATACAG TCTTCAAGCT
AGACAAATCA GGGCCTCACT TTTTCATAAG TGGAAGCAAA GACAACTGCC TGAAAAATGA AAAGTTAACA GTGATTGTGC
TTGCTGAAAG GAACAAAAAC AGCAACCAAA GCACCAATGC TTCTCCACCT TCACCACAAT CATCATCTTC ATCACCACCA
CCTACTACTG GGCAAGAGGG TCAATCTCCA ACTTCAGACA CAAACCAAAC ACCAAGCCCT GTTAGTGAAC CTCCACCTCC
CAATGCTGCT GCTTCAGCCT TTCTCTCTCT TGCTGGCTCT GTTGGAGCAT TCATGGTTTC AGTCATCATG CTTTTATCTT
TCTAA

>Vigan.06G104900.01
MATFIFRSNK AVHAFVGCLC LLLMVQKGAS YDFVVGGQKG WSVPNDPTFN PFNQWAEKSR FQVGDSLVFN YQSGQDSVLY
VKSEDYASCN TDSPYSKFSD GHTVFKLDKS GPHFFISGSK DNCLKNEKLT VIVLAERNKN SNQSTNASPP SPQSSSSSPP
PTTGQEGQSP TSDTNQTPSP VSEPPPPNAA ASAFLSLAGS VGAFMVSVIM LLSF*