GBrowse Details

Vigan.06G104500.01

Basic Information:
Name: Vigan.06G104500.01
Multiple alignment
Variant Information
Position: Chr06:19731121..19734814 (+ strand)
Length: 3694
Functional Information:
Description: Similar to Thiamine thiazole synthase, chloroplastic. [V7AJ94, Phaseolus vulgaris]
GO: Biological Process: response to stress (GO:0006950)
Biological Process: thiamine biosynthetic process (GO:0009228)
InterPro: Thiazole biosynthetic enzyme Thi4 family (IPR002922)
Thiamine thiazole synthase (IPR027495)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.88,14.73,21.11,27.63,3981.37,256.38,3.44,12.05
Arabidopsis thaliana homolog: AT5G54770.1
Automatic updates:
Name: NM_001249883 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thiamin biosynthetic enzyme (SC-04), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249895 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thiamin biosynthetic enzyme (SC-03), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:19731121..19731497 (+ strand)
Length: 377
Type: five_prime_UTR
Position: Chr06:19731498..19731899 (+ strand)
Length: 402
Type: CDS
Position: Chr06:19733709..19734197 (+ strand)
Length: 489
Type: CDS
Position: Chr06:19734426..19734590 (+ strand)
Length: 165
Type: CDS
Position: Chr06:19734591..19734814 (+ strand)
Length: 224
Type: three_prime_UTR

>Vigan.06G104500.01 class=Sequence position=Chr06:19731121..19734814 (+ strand)
TAATACTAAA GACAAAATAT ATTTTTCTAA ACACAAAAAA AAAACATAAT CACATGACAA CAGAAATAGT TGTTTAATCA
TTTTACTACT TTGCAACGGA GATATTTCCA CATAAGATGA GTGTGGTCAC AGTTGCTGCA ACAGTGCCAA ACAGTGGTTG
CTTCGGAAAA CAGAAAACTC TGCACCTTTG ATTTCCAACA AAATTCCACG TGTCTTCCAT GCACACCATC AAAGAACAGT
TCTCACAAAC TTTCTCTCTC CATTTCTGAT TTGTCACCTT TGAAACTTTT CCATTCTTGC AAACTACTCT CCTCAATAAA
TACCACACTC TCCAGACCAA AACCACATCT CACACTTTCA CTTATTGATT CTTTTTCATG GCTTCCACAA TCACCTCCTC
CTCCTTATTC TCTGCCTCCA TTCTCTCTCC ACCCTCTTCA TCCCTCTTGT CCACCAAACC CACCCATGCC ACCCCCACTC
CCCGCTTCCA CGCGCCTCGC GCGTCTATGT CCGTCGCTTC CCCACCCCCT TACGACTTGT CTTCTTTCAG GTTCCAGCCA
ATCAAGGAGT CGATTGTGTC ACGTGAGATG ACGCGCCGCT ACATGACCGA CATGGTCACA CATGCTGACA CTGATGTTGT
CATCATCGGT GCTGGGTCTG CGGGACTTTC CTGTGCCTAT GAACTCAGCA AGAACCCTTC CGTTAATGTT GCCATTATCG
AACAGTCCGT CAGTCCCGGT GGCGGCGCGT GGCTCGGTGG CCAGCTCTTC TCCGCCATGG TCAGTAACTT CTCTAAAGAC
CAGCCACCTT GCTTCTACTG TTATTATTTT GTTTCTGATA TTTATTTTCT TCTAACTAGG AAAAAATAAA AGGAGATCTT
ATAAAATAAC TACTGAAACG CATGCATGAC TTTTGTGTTT ATTAATAATT ATTTAATATT ATATTTTTAA ATTATTAATA
ATTATTTAAA TATATTTTAT ATTTAGTGTT TATTTTATTC AGATGAATTT TTTTATTAAA TTAAATAATT TTATTCAAAA
AAAATAATTA CAAAATAAAT ACCATGGCAT GAGATTAAGT CTTATTCAAA TGTATTTACA TCTTGTTGAA ATAGTAAAAT
TTGTTATCTA ATTTCAAGTA AATCAAGACA TGATAACCAT AGACCTATAT TTCTTTATAG AAGGGATAAG TTTTTATGTA
TCATGATTTA ATATTTTAAT TTTGCTAGGG GATTTTTTTA TTTAGATTTA GTATTGGACT ATGTTAGATC AGAAGAATTT
TTTAGTATTC CGATAGAACA TGAAATTTTT TTTAAGGCAA GATAAAAATG TTTCTTGGAC ATTAAATGTG TAAAATATGA
ATAAATTTAA AAAAAAATTA ATTTTTATTT TATCAGAATA ATAAAAGTAC TTATTTGAGG CATAGATCTA GAACATTCGA
CCATGTTTGC ACTAAAATGC ATTTATTTGA CATAATATTA TTATAATAAT AATAATAATA ATAATAATAA TAATAATAAT
AATAATAATA ATAATAATAA TTTATTAAAT ACTTTAATAA ATGAAAAAAA ATAATTATTA ATGGCACATT AAATCTCTAT
AAAATAGTTA TAAAAAACAG AGATAACTAA AACATTTATT AAATTTTTAA ATATTTTAAT TATTAATTTA CCAAATGTAA
CAAAAGTATT ATTTTTTTAG TAAAACAGTT ATAAAAGTAG AAATTTTACT CGAGCTTATT CCTATTGAAA CTTGATCAAA
TTATGTGTTT TAAAATTAAA TTATGTATTG AAACTTGATC AAATTATGTG TTTTAAAATT AAGTTATTAA TATCTGACTG
AACTGTCCTG TTAGAAGGGA ATTTGGACTG ATCTTATTCA AAGGAAAATA GTTGCATTCC ATTTTTTTAT ATGTTGAATT
CTATTTTTTT TATCACATAT TTCCTTTAAT TACTCGATTT GAAAGGTTAT CTTTTATACA AAGAGAAATG TTATAAAATT
TCCTCTAGTA TTAGTTTTAT ATTATTATTA GAAAATTATG TATAGGTTTA AAATATATAA TATAGGTGTA TATTGTTTTA
ATAATTTTTG GTTAAATAAT TATTGTAAGA AAAAAAATCG TATCAAAGCG TAAGAAACAA ATAGTGAAAA ATATGAATAT
GTGATTGACT TAATCAATTT TAATTAATAG TGTAAGAGTA TATTGAAGGG TCATTATGAA ACAAAGCATA TTAAAGGCTA
TGAATCAAAT GTTAAATAAT GTGAAGAATA ATAATTTAAT AACTTTACCT TTTTAAAAAA TATAAGAGTA AATTAAAAAT
TAAAAGGATC ATTATAGAAA GAAAAAAAAT ACTATTAAAG GTTATGCAAA AAATGGTAAA AAATGAATTA CAAAAGGAAT
ATATTAAAGG GTCAATGAAT CATATATATA AATTTTAATT AATAGAATGA GAGTGTATTG AAGGGACTTT CAAACTAAAG
GAGAAATACT GAAAGGTAGA TGAAAACAAA AGAATGGTAG TAGAAAATTG TGAAGAGATA GGAAACAGAT AATCTAAATG
TAATGGTATT GTGAATGTGA AAGTGCAGAT AGTGCGTAAG CCAGCACATC TTTTCCTTGA CGAGCTCGGT CTTGAGTATG
ACGAGCAAGA TAACTACGTG GTGATCAAGC ACGCTGCACT GTTCACATCG ACCATCATGA GCAAGCTGTT GGCTAGGCCA
AACGTGAAGC TCTTCAATGC CGTAGCAGCT GAGGATTTGA TCGTGAAGAA TGGAAGAGTT GGTGGTGTTG TCACTAACTG
GGCCTTGGTT TCCATGAACC ATGACACTCA ATCCTGCATG GACCCCAATG TGATGGAGGC TAAAGTGGTG GTGAGTTCTT
GTGGGCATGA TGGACCCTTT GGAGCCACTG GTGTGAAGAG GCTCAAAAGC ATTGGCTTGA TTGATAATGT GCCAGGAATG
AAGGCCCTTG ACATGAACAT GGCTGAGGAT GCCATTGTGA GACTCACTAG AGAAATTGTT CCTGGCATGA TTGTTACTGG
AATGGAAGTT GCTGAGATTG ATGGTGCTCC AAGAATGGTA AAACTTTCTC TCTTCATATT CATGTTGAAA AAATTTAGAT
TTTTTCTACT GTTACGACTG TTCTGATAGA CTGATTCTTT TGCTTAGACA TGCTGGTACT CTGGTGCATG TATTATGAGT
TCTTGGGAGT GTTTGTGTTT TTTATATATT AAGTACTTTT TGAATAATTT TTTATTTTCA AAAACTTAAT TTATTTGTTT
GGGGTTTGGT CAATTGGAAA TGCAGGGTCC AACCTTTGGA GCAATGATGA TATCAGGGCA GAAAGCAGCT CATCTGGCTT
TGAGATCTTT GAAACTTCCC AGTGCTTTGG AATCTGTGGG AAATGTTCAT CCTGAGCTTG TCCTAGCTGC TGCTGCTGCT
GCCGAATCTG TTGAAATCGC AGATGCTTAA ATCAATGTTG CATTGAATTT AACTTGGTTG TATTATCCAT GCTTGGAACT
AGAAATAAGT AGTTCAAACA TTAAGCTTTT AAGATGTTGG TAGTGATGAA TTGGAGTGGT TGATTAGACT CTATGAGCTT
CTTGGTAATA TCATGAATTA TGTTTGTCAA CTCGTTTTTT TCTCACAACC TCAAGCTTCT GTTTTAATGG TCACATTCTT
GTGCCAAGTT TCAT

>Vigan.06G104500.01
TAATACTAAA GACAAAATAT ATTTTTCTAA ACACAAAAAA AAAACATAAT CACATGACAA CAGAAATAGT TGTTTAATCA
TTTTACTACT TTGCAACGGA GATATTTCCA CATAAGATGA GTGTGGTCAC AGTTGCTGCA ACAGTGCCAA ACAGTGGTTG
CTTCGGAAAA CAGAAAACTC TGCACCTTTG ATTTCCAACA AAATTCCACG TGTCTTCCAT GCACACCATC AAAGAACAGT
TCTCACAAAC TTTCTCTCTC CATTTCTGAT TTGTCACCTT TGAAACTTTT CCATTCTTGC AAACTACTCT CCTCAATAAA
TACCACACTC TCCAGACCAA AACCACATCT CACACTTTCA CTTATTGATT CTTTTTCATG GCTTCCACAA TCACCTCCTC
CTCCTTATTC TCTGCCTCCA TTCTCTCTCC ACCCTCTTCA TCCCTCTTGT CCACCAAACC CACCCATGCC ACCCCCACTC
CCCGCTTCCA CGCGCCTCGC GCGTCTATGT CCGTCGCTTC CCCACCCCCT TACGACTTGT CTTCTTTCAG GTTCCAGCCA
ATCAAGGAGT CGATTGTGTC ACGTGAGATG ACGCGCCGCT ACATGACCGA CATGGTCACA CATGCTGACA CTGATGTTGT
CATCATCGGT GCTGGGTCTG CGGGACTTTC CTGTGCCTAT GAACTCAGCA AGAACCCTTC CGTTAATGTT GCCATTATCG
AACAGTCCGT CAGTCCCGGT GGCGGCGCGT GGCTCGGTGG CCAGCTCTTC TCCGCCATGA TAGTGCGTAA GCCAGCACAT
CTTTTCCTTG ACGAGCTCGG TCTTGAGTAT GACGAGCAAG ATAACTACGT GGTGATCAAG CACGCTGCAC TGTTCACATC
GACCATCATG AGCAAGCTGT TGGCTAGGCC AAACGTGAAG CTCTTCAATG CCGTAGCAGC TGAGGATTTG ATCGTGAAGA
ATGGAAGAGT TGGTGGTGTT GTCACTAACT GGGCCTTGGT TTCCATGAAC CATGACACTC AATCCTGCAT GGACCCCAAT
GTGATGGAGG CTAAAGTGGT GGTGAGTTCT TGTGGGCATG ATGGACCCTT TGGAGCCACT GGTGTGAAGA GGCTCAAAAG
CATTGGCTTG ATTGATAATG TGCCAGGAAT GAAGGCCCTT GACATGAACA TGGCTGAGGA TGCCATTGTG AGACTCACTA
GAGAAATTGT TCCTGGCATG ATTGTTACTG GAATGGAAGT TGCTGAGATT GATGGTGCTC CAAGAATGGG TCCAACCTTT
GGAGCAATGA TGATATCAGG GCAGAAAGCA GCTCATCTGG CTTTGAGATC TTTGAAACTT CCCAGTGCTT TGGAATCTGT
GGGAAATGTT CATCCTGAGC TTGTCCTAGC TGCTGCTGCT GCTGCCGAAT CTGTTGAAAT CGCAGATGCT TAAATCAATG
TTGCATTGAA TTTAACTTGG TTGTATTATC CATGCTTGGA ACTAGAAATA AGTAGTTCAA ACATTAAGCT TTTAAGATGT
TGGTAGTGAT GAATTGGAGT GGTTGATTAG ACTCTATGAG CTTCTTGGTA ATATCATGAA TTATGTTTGT CAACTCGTTT
TTTTCTCACA ACCTCAAGCT TCTGTTTTAA TGGTCACATT CTTGTGCCAA GTTTCAT

>Vigan.06G104500.01
ATGGCTTCCA CAATCACCTC CTCCTCCTTA TTCTCTGCCT CCATTCTCTC TCCACCCTCT TCATCCCTCT TGTCCACCAA
ACCCACCCAT GCCACCCCCA CTCCCCGCTT CCACGCGCCT CGCGCGTCTA TGTCCGTCGC TTCCCCACCC CCTTACGACT
TGTCTTCTTT CAGGTTCCAG CCAATCAAGG AGTCGATTGT GTCACGTGAG ATGACGCGCC GCTACATGAC CGACATGGTC
ACACATGCTG ACACTGATGT TGTCATCATC GGTGCTGGGT CTGCGGGACT TTCCTGTGCC TATGAACTCA GCAAGAACCC
TTCCGTTAAT GTTGCCATTA TCGAACAGTC CGTCAGTCCC GGTGGCGGCG CGTGGCTCGG TGGCCAGCTC TTCTCCGCCA
TGATAGTGCG TAAGCCAGCA CATCTTTTCC TTGACGAGCT CGGTCTTGAG TATGACGAGC AAGATAACTA CGTGGTGATC
AAGCACGCTG CACTGTTCAC ATCGACCATC ATGAGCAAGC TGTTGGCTAG GCCAAACGTG AAGCTCTTCA ATGCCGTAGC
AGCTGAGGAT TTGATCGTGA AGAATGGAAG AGTTGGTGGT GTTGTCACTA ACTGGGCCTT GGTTTCCATG AACCATGACA
CTCAATCCTG CATGGACCCC AATGTGATGG AGGCTAAAGT GGTGGTGAGT TCTTGTGGGC ATGATGGACC CTTTGGAGCC
ACTGGTGTGA AGAGGCTCAA AAGCATTGGC TTGATTGATA ATGTGCCAGG AATGAAGGCC CTTGACATGA ACATGGCTGA
GGATGCCATT GTGAGACTCA CTAGAGAAAT TGTTCCTGGC ATGATTGTTA CTGGAATGGA AGTTGCTGAG ATTGATGGTG
CTCCAAGAAT GGGTCCAACC TTTGGAGCAA TGATGATATC AGGGCAGAAA GCAGCTCATC TGGCTTTGAG ATCTTTGAAA
CTTCCCAGTG CTTTGGAATC TGTGGGAAAT GTTCATCCTG AGCTTGTCCT AGCTGCTGCT GCTGCTGCCG AATCTGTTGA
AATCGCAGAT GCTTAA

>Vigan.06G104500.01
MASTITSSSL FSASILSPPS SSLLSTKPTH ATPTPRFHAP RASMSVASPP PYDLSSFRFQ PIKESIVSRE MTRRYMTDMV
THADTDVVII GAGSAGLSCA YELSKNPSVN VAIIEQSVSP GGGAWLGGQL FSAMIVRKPA HLFLDELGLE YDEQDNYVVI
KHAALFTSTI MSKLLARPNV KLFNAVAAED LIVKNGRVGG VVTNWALVSM NHDTQSCMDP NVMEAKVVVS SCGHDGPFGA
TGVKRLKSIG LIDNVPGMKA LDMNMAEDAI VRLTREIVPG MIVTGMEVAE IDGAPRMGPT FGAMMISGQK AAHLALRSLK
LPSALESVGN VHPELVLAAA AAAESVEIAD A*