GBrowse Details

Vigan.06G082100.01

Basic Information:
Name: Vigan.06G082100.01
Multiple alignment
Variant Information
Position: Chr06:13624993..13629131 (- strand)
Length: 4139
Functional Information:
Description: Similar to peroxisomal 2,4-dienoyl-CoA reductase-like. [XP_004517259.1, Cicer arietinum]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: oxidoreductase activity (GO:0016491)
InterPro: Short-chain dehydrogenase/reductase SDR (IPR002198)
Glucose/ribitol dehydrogenase (IPR002347)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.52,12.91,34.91,46.81,43.29,22.30,48.73,22.65
Arabidopsis thaliana homolog: AT3G12800.1
Automatic updates:
Name: NM_001252863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal 2,4-dienoyl-CoA reductase-like (LOC100793630), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001253332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal 2,4-dienoyl-CoA reductase-like (LOC100800885), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:13624993..13625347 (- strand)
Length: 355
Type: three_prime_UTR
Position: Chr06:13625348..13625502 (- strand)
Length: 155
Type: CDS
Position: Chr06:13626798..13627020 (- strand)
Length: 223
Type: CDS
Position: Chr06:13627094..13627266 (- strand)
Length: 173
Type: CDS
Position: Chr06:13627682..13627841 (- strand)
Length: 160
Type: CDS
Position: Chr06:13628839..13629024 (- strand)
Length: 186
Type: CDS
Position: Chr06:13629025..13629131 (- strand)
Length: 107
Type: five_prime_UTR

>Vigan.06G082100.01 class=Sequence position=Chr06:13624993..13629131 (- strand)
AATTTATATA TATAAATACA GTGAAAGTGG AGCAAACAGC GATTTCAACA AAGAAAGCAT AGAGACGAAA GGTTTCTCTT
GAGAGAACCC ACAAATCGTT GAATCTTATG GAATCGCCGT TCAAAGCAGG AATTCTGAAA GGGAAGGTGG CTCTGATAAC
AGGAGGAGCC TCTGGAATCG GTTTCGAAAT TTCGACGCAA TTCGGCAAAC ATGGAGCCTC CGTCGCGCTC ATGGGTCGCC
GAAAGCAAGT TCTTCACTCC GCTGTCTCCG TTCTCCAATC CCTCGCCATT CCCGTAATCA ATTCACTCCT ACTTTTCTCT
CCAGTCGCTG TTCTCCTTCA ATTTTTTAAT TTGTGTTTTC TCGGAGGGAA TGATTCTCTC GCTGCTCATT TTTCACTTCC
TACACTCTTA GAAATCAAAT AAGATTTTGA TTCAATTTGT GTGGATTTAT AAAAATGAGA TTAACACACT TGTTCCGAAC
TGAAGTTATT TTTTGTGTAT TACAAGGCTT TGCTTCTAGT ATGTAAATCT TTCATCCTCA AGTTATCTGT CAAGTCCACT
AGTATTGGCC TGTTTGGTCA AGAAGAAAAC TATGAGATTA ACTTTTTTAC TAGTTAAAAT TAACATATAT TAGTTCATTT
GTAAAAGTTA TTTCAGATAG TTAGTTTCTC TATTTTATTT TTATTTTTAA TTTATGCAAC TTTAACTTAC AGTGAAACTC
ATTTTGTTCT TTTTTTTTTT TTTATCTCTT CTAAAAGTTT GTGGAGAAGT TTGTTTAAAC ATGTGTAGAA TTGGGATAAG
CGCAACCAAG GTCTAGTCAG GATTGGACAC TAGTATGAGC TTTATGGATT TATCTGAAAT GGCGTCTTTA TGAATTGAGA
GGGAAAAATG TATATAAACT AAGTCACCTG AGACTATTTT TGTTTTGAAG TACCTAAACA TGTATTTCCA CAAGACATGC
GTGGGAAAAA TTTAACACGG GAGGATTCGT GGACAAAGTT AGATGTAGTG CGGAAGGTGC TTTTAGTGTT TTTCTTAGAT
GAAAAATAGA GTTTTCTTTT ATCAGAAATA CATACTGAAA TATTTTAGGC ATTGTTAGGG CCAAAACATC AATTTTTATT
AGACAACTCA AAACAACGAT GTAGAACTGC ATGTAAGTTT TGCATACGAA CAACTAAACT GATGGACTTT TTGGTCGTGT
AAATTGCATC CTGACTCTGA ATGTTTTAGT TTTGTTTTTT GTTTTGGCAA GAGTGAATGG GTAATTGATG TGGATTTTGT
TCTGGTTTAG GCGGTTGGGT TTGAGGGGGA CGTACGGAAG CAAGAGGATG CAGAGAGGGT GGTGGAATCA ACGTTTAAGC
ATTTTGGAAG GATTGATATA CTTGTGAATG CTGCGGCTGG GAACTTCCTG GTGTCGGCAG AGGATCTCTC CCCCAATGGC
TTTCGCACAG GTTCTATCTG TGTCACATCT TTTCTTTTCT TTTTTTAAGG CAAATGATAA ATTGGGATAT TGGTTAAAGA
ATTAAAAATA AAACGTATAT TGAGAAGTGT CATTAATATG TGATTTTCAA CGCATCTTCG TTATGATTCT GCTGAAGAGT
TGTCTAACTT ATCTCATGTA AGATGATTGG TGCAAATCCC TTTTGTAGTT AAATCTGATT AATAGAATTT TTAGATTAAT
CGTTTATGAC TTAGTCACAT TTTTAGATTA CTTTTAGACT TCAGTGATAC TCCAATCAAA ATTGAAGTTC ACCCCGGTCA
ACATAAATTA ACTTAAACTT TTGATACAAA CTTCTACCAT GGGAATTGGT GAAATTCTTA TTTTGACGGA GAACTGTACC
AAAAATACTT AATAATTCTT GACAGTTTTG GACATTGATT CTGTTGGCAC GTTCACAATG TGCCGTGAAG CCCTAAAATA
TCTCAAGAAA GGAGGAGAAG GAAGAAGCAA CTCTTGTGGT GGGGGATCAA TAATAAATAT CAGTGCCACC TTGCACTACA
CAGCTTCTTG GTACCAAATT CACGTGTCTG CTGCAAAGGT TTGTAACACA TTACTAACAT GTTAAAATCA TCTTGTTGGC
ATTCACCTTT AAAATTTCTA TTATTCACCA GGCAGCTGTT GATGCCACTA CAAGAAACTT GGCACTAGAA TGGGGAACAG
ACTATGACAT TAGAGTCAAT GGAATTGCTC CAGGTCCAAT AAGTGACACT CCTGGCATGA GTAAACTAGC TCCCGACGAA
ATAAGTAGCA AAGCCAGAGA CTATATGCCA CTTTATAAAC TTGGGGAGAA ATGGGATATA GCCATGACTG CACTTTTCCT
AGCGTCAGAT GCAGGTTGGT CGTTTTGTCT ATTCACCCAA ATTATTGTTT TAATCTTGTT TACATGTTTT TATTTCGGCA
ATAAAATGTT GTTTCTGTAT ATATATTAAT GAATGAATGT CCCGTTGAAT TTCTTGAACT TCTTCGTTCC TCTTAATTTT
TAGCAGCTCC CAAACAAAAA ACAAATTATC AGAAAGTTAC AGAAATGAAA TTTTAAATAA AATTATTTTC AGTTCAGAAT
ATTATTTTAG AATTTAAGTA CTCTCTTCAC CACGTCCCAA TCAGCTAATA CTGTGTTAAG AATGTTTCAC CAAATTATTT
AGTACCAAGT TGAATATGTT CAGTGCAATA CTATACGGTA GGAAATTGTT TGGAAATCTT GGAACATATA TTACTAACTT
CTTTCGACAT CAGGGGATGC ATTTAAATTT CTTGCATGAT TAACAAGCTG CTGATTTAGA ATTTATCATG TATTATATAT
CATGCTCGGG TTTTCTCTTT TAGTTTTGGC AGCGAAAATT GCAAGATTTA GGTACACGAA ATCATTGTGT AACTCTGTAC
ACAAGCCATT CTTCTTATTC GTACTATATT CCACAAGTAT ACGAGTGGTA TCTTAAACAG TATCTAGTTA TGTGTATTAC
TCTTGTAATA TCTAGTTATC CTGTCGTTAT TTTTGGTCTC TTTTTTATAA TATTTAAACT GATATAAGTT TATAATATAA
AAATGTCTTT CTCTTGGTTG CAATTCTCTT TTATATAATA GTCTTGGCTG CTAGCATTCT ATTCCTATTC TAGATTTGAT
TGAAACAAAG AAAAGTTTTT GCAGCCTATA CTCCCTGAGG GTGTAATTTA TGTTTTTTTC AAAAAAAATA TCTCATTTTT
GTGATCTCTA TTAGTGATTA ATCTGTTGTT CTATTTTGTA CCTGTACTGT ACACGCTTTC TTAACCGATC CCAACCTGTA
TTGCATTTCT ATGTGATCTT TGATATCTTA GTTGAATTGT TATCCTTTGG CTAGATATGT ATCCAGTGGC ACTGCATACA
TGCATACTTT TCTATTTATC TAAGAATGCT ATAGCATAAG TTGGAAAAAA TCAATCGTTC TTAACTTCAG AAAACAAAAA
TGGATTGGTG TAAAAACACC TCGAAATATT TCTAATTTCT AAGTCATCAT CAAACAGTTA TCAGGGTGAT AGACTCTTTA
AAACAAATTT AATTAATATC TTTTACTTTC ACTCTTTTCA TGATTCACCC ATCTGGAAAA AAATTGTTGA CATGGGGAAA
ATTGAAAAAA TTTGTCGAAA ATTGTGAAGG AAAATTCATC AATGGCGACG TTGTGATAGT TGACGGAGGA CTTTGGCTGA
GCCGGCCTCG TCATTTAGCA AAAGAGGCTG TGAAGCAAGT ATCTCGATCA GTAGAAAAGA GATCAAGAAA TGCACCAGTT
GGTGTTCCAA AAAGCAAGCT CTGAACCACC ACATTCAGGT TTTAGCTCCT TTACACAACG GGAATCATTC TATGATACTT
ATAATGTGTT ACTTTTAAAT TATTAAATCA ATTAATGATT TGTAGAAAAT TATGGATATG GAAGCCATGA TGTGTTAATT
TTCAATTGTT AAACAGGTGA ATTTTCTCAA ATTGTAGAAC TCAAAATAAA ATTAAGCTGT GATTCCCTTT ATTATAATTC
ATATACATTG TCTTATCTTC AACACTTACA CAACTCTAGC TGTACCTTAG GCTCAACTCC TCTTTTACCT CCTAGTCAAT
ACTTTTACAT TTTAAAAAAA TATTTTTAAT CTCTGAACTT TAATATATTC ATCTTTAAA

>Vigan.06G082100.01
AATTTATATA TATAAATACA GTGAAAGTGG AGCAAACAGC GATTTCAACA AAGAAAGCAT AGAGACGAAA GGTTTCTCTT
GAGAGAACCC ACAAATCGTT GAATCTTATG GAATCGCCGT TCAAAGCAGG AATTCTGAAA GGGAAGGTGG CTCTGATAAC
AGGAGGAGCC TCTGGAATCG GTTTCGAAAT TTCGACGCAA TTCGGCAAAC ATGGAGCCTC CGTCGCGCTC ATGGGTCGCC
GAAAGCAAGT TCTTCACTCC GCTGTCTCCG TTCTCCAATC CCTCGCCATT CCCGCGGTTG GGTTTGAGGG GGACGTACGG
AAGCAAGAGG ATGCAGAGAG GGTGGTGGAA TCAACGTTTA AGCATTTTGG AAGGATTGAT ATACTTGTGA ATGCTGCGGC
TGGGAACTTC CTGGTGTCGG CAGAGGATCT CTCCCCCAAT GGCTTTCGCA CAGTTTTGGA CATTGATTCT GTTGGCACGT
TCACAATGTG CCGTGAAGCC CTAAAATATC TCAAGAAAGG AGGAGAAGGA AGAAGCAACT CTTGTGGTGG GGGATCAATA
ATAAATATCA GTGCCACCTT GCACTACACA GCTTCTTGGT ACCAAATTCA CGTGTCTGCT GCAAAGGCAG CTGTTGATGC
CACTACAAGA AACTTGGCAC TAGAATGGGG AACAGACTAT GACATTAGAG TCAATGGAAT TGCTCCAGGT CCAATAAGTG
ACACTCCTGG CATGAGTAAA CTAGCTCCCG ACGAAATAAG TAGCAAAGCC AGAGACTATA TGCCACTTTA TAAACTTGGG
GAGAAATGGG ATATAGCCAT GACTGCACTT TTCCTAGCGT CAGATGCAGG AAAATTCATC AATGGCGACG TTGTGATAGT
TGACGGAGGA CTTTGGCTGA GCCGGCCTCG TCATTTAGCA AAAGAGGCTG TGAAGCAAGT ATCTCGATCA GTAGAAAAGA
GATCAAGAAA TGCACCAGTT GGTGTTCCAA AAAGCAAGCT CTGAACCACC ACATTCAGGT TTTAGCTCCT TTACACAACG
GGAATCATTC TATGATACTT ATAATGTGTT ACTTTTAAAT TATTAAATCA ATTAATGATT TGTAGAAAAT TATGGATATG
GAAGCCATGA TGTGTTAATT TTCAATTGTT AAACAGGTGA ATTTTCTCAA ATTGTAGAAC TCAAAATAAA ATTAAGCTGT
GATTCCCTTT ATTATAATTC ATATACATTG TCTTATCTTC AACACTTACA CAACTCTAGC TGTACCTTAG GCTCAACTCC
TCTTTTACCT CCTAGTCAAT ACTTTTACAT TTTAAAAAAA TATTTTTAAT CTCTGAACTT TAATATATTC ATCTTTAAA

>Vigan.06G082100.01
ATGGAATCGC CGTTCAAAGC AGGAATTCTG AAAGGGAAGG TGGCTCTGAT AACAGGAGGA GCCTCTGGAA TCGGTTTCGA
AATTTCGACG CAATTCGGCA AACATGGAGC CTCCGTCGCG CTCATGGGTC GCCGAAAGCA AGTTCTTCAC TCCGCTGTCT
CCGTTCTCCA ATCCCTCGCC ATTCCCGCGG TTGGGTTTGA GGGGGACGTA CGGAAGCAAG AGGATGCAGA GAGGGTGGTG
GAATCAACGT TTAAGCATTT TGGAAGGATT GATATACTTG TGAATGCTGC GGCTGGGAAC TTCCTGGTGT CGGCAGAGGA
TCTCTCCCCC AATGGCTTTC GCACAGTTTT GGACATTGAT TCTGTTGGCA CGTTCACAAT GTGCCGTGAA GCCCTAAAAT
ATCTCAAGAA AGGAGGAGAA GGAAGAAGCA ACTCTTGTGG TGGGGGATCA ATAATAAATA TCAGTGCCAC CTTGCACTAC
ACAGCTTCTT GGTACCAAAT TCACGTGTCT GCTGCAAAGG CAGCTGTTGA TGCCACTACA AGAAACTTGG CACTAGAATG
GGGAACAGAC TATGACATTA GAGTCAATGG AATTGCTCCA GGTCCAATAA GTGACACTCC TGGCATGAGT AAACTAGCTC
CCGACGAAAT AAGTAGCAAA GCCAGAGACT ATATGCCACT TTATAAACTT GGGGAGAAAT GGGATATAGC CATGACTGCA
CTTTTCCTAG CGTCAGATGC AGGAAAATTC ATCAATGGCG ACGTTGTGAT AGTTGACGGA GGACTTTGGC TGAGCCGGCC
TCGTCATTTA GCAAAAGAGG CTGTGAAGCA AGTATCTCGA TCAGTAGAAA AGAGATCAAG AAATGCACCA GTTGGTGTTC
CAAAAAGCAA GCTCTGA

>Vigan.06G082100.01
MESPFKAGIL KGKVALITGG ASGIGFEIST QFGKHGASVA LMGRRKQVLH SAVSVLQSLA IPAVGFEGDV RKQEDAERVV
ESTFKHFGRI DILVNAAAGN FLVSAEDLSP NGFRTVLDID SVGTFTMCRE ALKYLKKGGE GRSNSCGGGS IINISATLHY
TASWYQIHVS AAKAAVDATT RNLALEWGTD YDIRVNGIAP GPISDTPGMS KLAPDEISSK ARDYMPLYKL GEKWDIAMTA
LFLASDAGKF INGDVVIVDG GLWLSRPRHL AKEAVKQVSR SVEKRSRNAP VGVPKSKL*