GBrowse Details

Vigan.06G056800.01

Basic Information:
Name: Vigan.06G056800.01
Multiple alignment
Variant Information
Position: Chr06:8165644..8168737 (- strand)
Length: 3094
Functional Information:
Description: Similar to 30S ribosomal protein S20 isoform 1. [XP_007021563.1, Theobroma cacao]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein S20 (IPR002583)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:147.27,31.12,46.50,187.74,31.09,73.99,12.14,45.52
Arabidopsis thaliana homolog: AT3G15190.1
Structure :
Position: Chr06:8165644..8165995 (- strand)
Length: 352
Type: three_prime_UTR
Position: Chr06:8165996..8166226 (- strand)
Length: 231
Type: CDS
Position: Chr06:8168159..8168322 (- strand)
Length: 164
Type: CDS
Position: Chr06:8168453..8168594 (- strand)
Length: 142
Type: CDS
Position: Chr06:8168595..8168737 (- strand)
Length: 143
Type: five_prime_UTR

>Vigan.06G056800.01 class=Sequence position=Chr06:8165644..8168737 (- strand)
AAAATATTTA CAAAAATTTG TAATAAAGAA AACAGTAAGG GTAGTATGTA AATATCGCAT AGAACGTTCA ACAAAGACCA
ATCATCGTCA TCTTTTCTCA TCGGATAAGA GAGAGAATTG CCTCTTTACT CACACAGGGA GATATGGCAA CCGCTGTTTC
GTGCTCATGG GTTACCCTTT CCTCCCAAAT GAAGAACATT TCTCTCACTT CCTATTCCCA TCCCATTTCC AATTCCAGTT
CTCTCAGTTT CTCCAAAAGC CTCTCTCTCC CTCTCTTCTC ACAAGGTACC TTCCACCAAC CACCCCATTT GACGGGGCTT
CTCTTTTTTC CCTTATTTCC ATCAGAAGAC GCGAAAGATT CGGTTTTTGT GGAGTTTTCA ATTGTGGGTC TGTGTCGGGT
TTGGTTTGTT TTCAGGTAAC TGCTTGCCGC TGAGCACAGT GCAAAGACGC GCGTCTGTGG TTTGCGAGGC TGCCCCGAAG
AAAAAGGTGG ACTCCGCTGT GAAGAGAGCT CGCCAAGCCG AGAACCGCCG CATTTACAAC AAAGCTCGTA AATCTGAGAT
AAAAACCCGT ACCAAGAAGG TGAAAGCTCT CTGTAATGTA AAAGGAGTTG TTTTGGTTTG GTTTTATGCT TCAATTGAAT
GGTTTGAATT TGTTAGATTA CACTGGAGAA CTTGCATTTT TTTTTGTTTG GCATGGAGTT GATCTTAAGA ATGGTGAAGT
TAATTTCATT TTTGTTTGTT TAAAAATGTC TAAACTATAG AATTTTAATT TTATGTGTTT AATTTTCAAA CATTATGTGT
ACAGTCAATT TTTTAGAAAC GGTCCAGGTA TGTCTTTTGA AGTAGTTATA AGAAAAGTCA TCAATCTCAC CAACATTATA
AATAGTATAA AAGATCTTTA CACTGGTAGT GCATCTAATT AAATTCCAAC TATGCTCCCT TCTGCATTAT ATTATGTTGT
TTCTATTTTA CATTTCACTA CTTTCAATTT CACATAAACT CATCCTCAGA CATTCAGAAG ACAGTTTTAG GTCTTGTTTA
GATAAATTCT CGCTAATAAT AAAGGTAAAA TGAATTAAGT TTTTTTCATG AGTTAAAATT CACTTATGCA CAAGTTAAAA
TTGGTTTTTG GAAAAGTTGA ATGAGAGAAA TTTTTTAAAT TAGCCTATTT ATAAGTTAAT TCTATATAGA ATGGAACCTA
GTTTTTTCAT TATTATGTGT TGTGGATGAC CAATTATATA TGTTGTTTCA CCTGAAGAAG ATGAGTAAAA AATTTAATGT
TTTAGGCTCC GAACCCTGTA GTTTGTAGTC ACTCTTTTTT AATTAAATCT TATCAAGTTT CACTCAATTG TTAATTTGAT
TAATTAGTTG TATTGTATTT GTATTTTTGC TATGAAGTAA TGTCAGTTGT CTTTAATGTG AAACTGTCTT GACTCCCACT
GGGAAATATG GGCTTACAAT ATGTTAGAAA TAGGAGAGAT AGAGAGAAAG AAGAAAAATA CATGTTAATG ATATGGAGTA
TGAGAGCAAT GAAGGAGAAG ATGATACGGT GGACTTTGGA CTTACACTGA CTGTAGGATG CTGTGTGCAG GGTTGGTTTA
AATAGTTTGT ATCTTATTTT TTTTTCAAGA GGCATGGATT TTCTTTTCAA CCAAGTTTTG GTAGGTTGCT AGTATAAACT
GAAAAGGAAT AAGAATGTCA TTCATTTTTT TTAATTAATT TTTTTTATGT TCACACTAAT TTAATGTTTT TCTTTCATGG
GAAAAGATTG TGATAAATCT TTACTTCTAC TAGTGTCTAA AATTAAGTGG TTACATCCTT ATAAATTATT GCAACAGATA
GTGCTCAATA TCCTTTTCAT CCCTACTTTT AATTGTACCA AGCTATGCTT GAGAAAAACA CTTTGGTTTT CTGTTGGCAT
CACACTCTAG GGTGTATGAC ATGATTGTTC TTATTTAGAG CAATTTGTTT ATACCAAGTA TGGCATGTCT TCCTACAACC
CATAGGTGAT TCCACCTCTT GCAGCATTCT TCTAGTTTCT CAGGAAATTT CTAATTAAAG AAGTTGGAAT TGTCAGCAAA
AGATGAAAAA GGGTGAGAAA AATAGGACTC ATGTTAGTAT GACATGCATG ATATAAAACA CTTTACTAGT TTTCCTAGTT
TCTGTTACTG TAACAGTATT GAGTATTCTT GTACAATTAC TTGTGCAAGC TCAGTCTACT CTAACCCAAT ATTAGACTCC
AAAAACAATT GTGAATCTTT ATGTGATAAC CAATGTAATA ACTGCAGTAC TTATGTTGAG CTCTTGCAAA ATAAGATTTA
TGTCTTACTT AACATTGTGA CTTGTAGTTA TGGGTACATT AAACTGCAGT AAACGCTTCT GATCTTGCTT AAAACATAAA
ATACTCTGAC AATACCACTC CTAATTCTTG TGAGAAGAAC TGGTGTTAAT AACTCTTGTC TTCTGTGCTA CCATCTCAAC
TTCTAGCTTT TATATAATAA TATTTGATCA GGTTTTGGAA GCTCTGGAAG TTCTGAAGAA GAAACAAGAT GCAGTATCCG
GAGAAATCCT CCCTATTGAG AAGTTGATTG GAGAGGCATA CTCAACAATT GATAAAGCTG TGAGAGCAGG AACACTGCAC
AGGAACACTG GAGCAAATCG AAAGGCTCGA CTTGCGCGAA GGAAGAAGGC GGTGGAGATC CACCATGGCT GGTATATCCC
AGTTCCCGAA GCCACTGCAT GAACCAATCC TATTGCTTGT TTACTTCGGG TAAAATGAGG TGCCAGTGAA GACTTTCTGC
AGATTTTTTC ATCTCTGTTC AAACATTGTA TTTAGTCTTC CTTGGTGTTG TTCAAATTGG TTTACAATTC CATACTTCAT
GTGTACCATC ATTATATAGA GCCATTGATT TGAACAACAT CCTCGTAATT TGCCTTTGTT GTACTTTTTT CCATGTTTTA
TAATGCAATG CCTCCATAAA CTTAATTGTA TTTCCCCTCA CAGGTGAAAA TTGATTGTTG TTATAATCCT GCACATGATG
CTGCAGGTGC ATCACTTAAT CTTTGCTCCT GTACAGTATC ATCGTGAATT ATTT

>Vigan.06G056800.01
AAAATATTTA CAAAAATTTG TAATAAAGAA AACAGTAAGG GTAGTATGTA AATATCGCAT AGAACGTTCA ACAAAGACCA
ATCATCGTCA TCTTTTCTCA TCGGATAAGA GAGAGAATTG CCTCTTTACT CACACAGGGA GATATGGCAA CCGCTGTTTC
GTGCTCATGG GTTACCCTTT CCTCCCAAAT GAAGAACATT TCTCTCACTT CCTATTCCCA TCCCATTTCC AATTCCAGTT
CTCTCAGTTT CTCCAAAAGC CTCTCTCTCC CTCTCTTCTC ACAAGGTAAC TGCTTGCCGC TGAGCACAGT GCAAAGACGC
GCGTCTGTGG TTTGCGAGGC TGCCCCGAAG AAAAAGGTGG ACTCCGCTGT GAAGAGAGCT CGCCAAGCCG AGAACCGCCG
CATTTACAAC AAAGCTCGTA AATCTGAGAT AAAAACCCGT ACCAAGAAGG TTTTGGAAGC TCTGGAAGTT CTGAAGAAGA
AACAAGATGC AGTATCCGGA GAAATCCTCC CTATTGAGAA GTTGATTGGA GAGGCATACT CAACAATTGA TAAAGCTGTG
AGAGCAGGAA CACTGCACAG GAACACTGGA GCAAATCGAA AGGCTCGACT TGCGCGAAGG AAGAAGGCGG TGGAGATCCA
CCATGGCTGG TATATCCCAG TTCCCGAAGC CACTGCATGA ACCAATCCTA TTGCTTGTTT ACTTCGGGTA AAATGAGGTG
CCAGTGAAGA CTTTCTGCAG ATTTTTTCAT CTCTGTTCAA ACATTGTATT TAGTCTTCCT TGGTGTTGTT CAAATTGGTT
TACAATTCCA TACTTCATGT GTACCATCAT TATATAGAGC CATTGATTTG AACAACATCC TCGTAATTTG CCTTTGTTGT
ACTTTTTTCC ATGTTTTATA ATGCAATGCC TCCATAAACT TAATTGTATT TCCCCTCACA GGTGAAAATT GATTGTTGTT
ATAATCCTGC ACATGATGCT GCAGGTGCAT CACTTAATCT TTGCTCCTGT ACAGTATCAT CGTGAATTAT TT

>Vigan.06G056800.01
ATGGCAACCG CTGTTTCGTG CTCATGGGTT ACCCTTTCCT CCCAAATGAA GAACATTTCT CTCACTTCCT ATTCCCATCC
CATTTCCAAT TCCAGTTCTC TCAGTTTCTC CAAAAGCCTC TCTCTCCCTC TCTTCTCACA AGGTAACTGC TTGCCGCTGA
GCACAGTGCA AAGACGCGCG TCTGTGGTTT GCGAGGCTGC CCCGAAGAAA AAGGTGGACT CCGCTGTGAA GAGAGCTCGC
CAAGCCGAGA ACCGCCGCAT TTACAACAAA GCTCGTAAAT CTGAGATAAA AACCCGTACC AAGAAGGTTT TGGAAGCTCT
GGAAGTTCTG AAGAAGAAAC AAGATGCAGT ATCCGGAGAA ATCCTCCCTA TTGAGAAGTT GATTGGAGAG GCATACTCAA
CAATTGATAA AGCTGTGAGA GCAGGAACAC TGCACAGGAA CACTGGAGCA AATCGAAAGG CTCGACTTGC GCGAAGGAAG
AAGGCGGTGG AGATCCACCA TGGCTGGTAT ATCCCAGTTC CCGAAGCCAC TGCATGA

>Vigan.06G056800.01
MATAVSCSWV TLSSQMKNIS LTSYSHPISN SSSLSFSKSL SLPLFSQGNC LPLSTVQRRA SVVCEAAPKK KVDSAVKRAR
QAENRRIYNK ARKSEIKTRT KKVLEALEVL KKKQDAVSGE ILPIEKLIGE AYSTIDKAVR AGTLHRNTGA NRKARLARRK
KAVEIHHGWY IPVPEATA*