GBrowse Details

Vigan.06G054600.01

Basic Information:
Name: Vigan.06G054600.01
Multiple alignment
Variant Information
Position: Chr06:7674593..7679421 (+ strand)
Length: 4829
Functional Information:
Description: Similar to Malate dehydrogenase. [V7AK23, Phaseolus vulgaris]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: malate metabolic process (GO:0006108)
Biological Process: cellular carbohydrate metabolic process (GO:0044262)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: malate dehydrogenase activity (GO:0016615)
Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (GO:0016616)
Molecular Function: L-malate dehydrogenase activity (GO:0030060)
InterPro: Lactate/malate dehydrogenase, N-terminal (IPR001236)
Malate dehydrogenase, active site (IPR001252)
L-lactate/malate dehydrogenase (IPR001557)
Malate dehydrogenase, type 1 (IPR010097)
Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (IPR015955)
NAD(P)-binding domain (IPR016040)
Lactate/malate dehydrogenase, C-terminal (IPR022383)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.61,38.63,232.52,144.12,299.71,297 .44,190.51,151.96
Arabidopsis thaliana homolog: AT1G53240.1, AT3G15020.1
Automatic updates:
Name: NM_001289254 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase, mitochondrial-like (LOC100777296), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354164 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max malate dehydrogenase (MDH-1), mRNA.
PubMed ID: 11535646 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:7674593..7674740 (+ strand)
Length: 148
Type: five_prime_UTR
Position: Chr06:7674741..7674995 (+ strand)
Length: 255
Type: CDS
Position: Chr06:7675926..7676099 (+ strand)
Length: 174
Type: CDS
Position: Chr06:7677135..7677303 (+ strand)
Length: 169
Type: CDS
Position: Chr06:7677585..7677646 (+ strand)
Length: 62
Type: CDS
Position: Chr06:7677753..7677874 (+ strand)
Length: 122
Type: CDS
Position: Chr06:7678006..7678123 (+ strand)
Length: 118
Type: CDS
Position: Chr06:7678808..7678945 (+ strand)
Length: 138
Type: CDS
Position: Chr06:7678946..7679421 (+ strand)
Length: 476
Type: three_prime_UTR

>Vigan.06G054600.01 class=Sequence position=Chr06:7674593..7679421 (+ strand)
CTAAAAACCT GCAGGTTCAT ATTCACTCAC CCACTAACAC TCTCACCATA AATTGTGACC CTTCTCGCAC AAACTCTTTA
TTCTTTTTTC TCTCTCGAGT TTTTTCCGAA AAGCTGAGTC TCGAAGCTAA CACCAAAGAG AGAGAACAAT GGTGAAGCCA
TCCATGCTCA GATCTCTCCA CTCCGCCGCC ACCCGCGGCG TCTCTCACTT GTCCCGCCGT GGCTACGCCT CTGAGCCGGG
GCCGGAACGC AAGGTCGCTG TTCTCGGTGC CGCCGGTGGG ATCGGGCAGC CCCTTTCCCT TCTAATGAAG CTTAACCCCC
TCGTTTCTAG CCTCTCCCTC TACGATATCG CCGGAACCCC CGGCGTTGCC GCCGATGTCA GCCACATTAA CACCAGATCT
AAGGTACCCC CGATCTACCC TCTTAACCGG ATTATATTAT TATGTGTTTT TTTTTTTCAG AATTATAGAC TTTGCTGTGT
TTTTACGAGG TGCCCTTTAT AGGGTCGTTG TAAAGTTACG AGCTTTGTGT AGTGCGGCTT TTTGTGTACC CATTTGTGGG
TTTCTTGGAA AGATTGAAGC TTTAATGAGG TTTGACCTAC GGTATCGTGT CATCATTGTT GAAATTTTGT TAAGGTGCTA
GATTTAGTGT TTTTTGGTGT TGTTTTTTCA GAGGGATCGG GAACTCTGGA GGGTTAATTC GCCCTCTGTT TTTATTCTGT
TTTGATTATG GTTATTTCTT TATTAATTTT GCGATGAAAC CTATTTTGTG TATAAGATCA TCTACAGTTT TTTTCTTGAA
CTGTTGATCT CGAGCCCATT TCTGTGGCAT AATGATCTAA TGACTATACT ATACTTTAAT GTTGTAGTAT TATTATTCGA
ACCGTTTCGC TGAGATGTAC TAATCTACTC TTTTTTCTTC CTTGGAGGGG AGGGAACGGT TCAGAATGAA AGTTTTGCTG
TAGTTTGATG TTAATGTCAC GATGAATTGA GTTATTTATC TTAGGCACAT GGATCTACCC TTTCAGGTTT ATTTGGCAGG
TGGACATTTA CTATGTTTTG ATATTAATAG CAGGAGTTGC ACTAATACAC CCGTTTTGGG CTTAATTTTT CCAAAAGTGC
AAATTTAACT GTAGTTTAAT GTTGAGCTAT TTTAATGTTG TGCATTGATG TAGCTTTCTT GTGGGGGTTT TGCAATGATG
CAGGCATTAT TGTAGTTTTA TGTTTTAGTA CAATTGCTTG AGCTCTTTTG GAACTATGCG CAATGTTTAC TATAGTGTAA
TGATGTTGTA CTAATGATAG AAATTTTATT TATTTTGTTA ATTGGGATTA CAGGTTGTAG GGTACCAAGG TGAGGAAGAG
CTTGGCAAAG CTTTGGAGGG TGCAGATGTT GTCATAATTC CTGCTGGTGT GCCCAGAAAG CCTGGAATGA CCCGGGATGA
TCTTTTTAAT ATCAATGCTG GCATTGTCAA GGCACTTTGT ACTGCTATTT CTAAATACTG CCCCCATGTG AGTGTCTTTT
TCCTTGAGTT GTTTTTTCAT ATTTTTTTTG TTAGTTAATG TTGTTGGCAC TGTTAGTATT GTTTTGCTGA ATTTATCCGT
GGAAAACATA TATAATGGTT TAGGGAACTT TCATTATGTT TGGTTTTTGA TGATTATTCA TTTTCATCTA TTTAACAGTG
GCTATTTTTC TAACGAAAAA GTTTTGGGAA TTGAATTGAT ACTAAAATTT ATAATTCTTA AGGAAATATG TTTTAAGCCG
AACACAAACT CATAAAATTG AGTTGTAAAG TAGGAATTGT ATCAATTTAT ATACTATAAT GTAGTCATAT CTTTAGTCAA
TGTGGGATCT TCAATACATC TCCTTACACA GAAGCCTTGA CAACTCGATT GTATGACGGG GAAATTCAAT AGTGGGTTGT
ATGATTGGCC TAATAAATTT GATTAGGATA GACTCTAAAT GATTATCATA TCATTTTGTG CAAGTGGAAT TTAAGTATAA
CATAATCTTG CAAAATGGAC TTGTAAGGTG AGGTTTACAT TTATACATCG TTAGTGGGCT GTATCTCTAA TTGATGTTAA
ATCTTTGACA TTCCAACTCT AAAATAATGG CTTGTAAGGT GAGGTTTTGT GTCAACCTAT ATATAATAAT TGGGTCATAT
CTCTATTTGA TATGGAATTT CTAGTACATC ATTTTACGTC AAGGACAAGA CATTTTGAAT GTGGGAATAT AGGGAGCCTG
AGAGTGGGTG GAATAGTTCC TACAAATTTT CTTTGAATAG ATTTTGAATG ATTATGAAAT CATTCTTGAA AGTGGGTTTT
AAGCCTAACT CGATATCACA AAATTGGTTT GTAAGGTGAG GTTTGTGATA TTTGATTTCC ACTAGTTATG ATGGTTGATG
ATATTATTAA GTGGTTGGTA TGAATTCTTT CCTCACCCAC TTGAAGTATA GGATTTAGTA ATCAAAAGTG TAATTGTGTG
CATGTCCTGT TTCATAGTAT GACTTTTTAT TTGATACTGA ATATTTTTAT CTTTGGAATC AGGCCCTTGT TAACATGATA
AGCAATCCTG TGAACTCCAC TGTTCCTATT GCGGCTGAAG TTTTCAAGAA AGCTGGAACA TATGATGAGA AGAGACTATT
TGGTGTAACC ACCCTTGATG TCGTCAGGGC AAAAACTTTC TATGCTGGGA AAGCCAATGT TCCAGTTGAT GGTAAGTCTA
CTGTGACAAA CATAATTGCT TTAATGTCTT GCTTTGGTGG TGATTTATTT AGCAACCTAC AGTTGGAACA ACTGAGGCAG
ACTGTTTGGT GTCAGATTTC ATTTTCATGG TTGTGTGAAG AAAATTCCAA CTAATTTCAA GAAAAAAAAA ACTGTTGTGT
TTTTTGCAAG TGGGTAGGGG TTGTAATAAT GTATTTCTTC TTTTGAAGAA TAATTTGTAT TTAGTTGTAT ATAACATTTG
GTTTGATTTG GGTTTGTTTT ATGTATCTGC AGGTGTCAAT GTGCCTGTTG TGGGTGGCCA TGCAGGCATT ACTATTCTAC
CCCTATTTTC TCAAGTACCT TTCTGCTCTA TGAATCTAAT TTTCCTCCCT GATATCTAAT CTGTTTGCCT AGCTTGGTAT
ATATGTACTG AATCCTTCTA ACTGTTTTTC AATTGTATAG GCTACACCAA AAGCCAATCT TGATGATGAT GTCATCAAGG
CTCTTACAAA GAGGACTCAA GATGGAGGAA CAGAAGTTGT GGAAGCTAAG GCTGGAAAGG GTTCTGCAAC TCTGTCCATG
GCGTAAGTGT GGCATTAACT GATTATTTAT CTTTAAAGTT AGTTAGTTAG TCAGTGAAGA TCATTGATAC TAATGCAAGA
CTGATATAAA ATCTAATCTT GTATTTTATT TTATTTTATT ATGTTTCTTG CAGCTATGCT GGTGCCCTTT TCGCTGATGC
TTGTCTCAAG GGCCTTAACG GGGTTCCAGA TGTTGTTGAG TGCTCATTTG TGCAATCCAC TGTCACTGAA CTTCCTTTCT
TTGCTTCAAA GGTCACTGAA CTGCACCATT TTATTGTGTT TCAAATTTTA CTGCTTCCCG TGCTTAAAGG GGGCTCCTCG
ATTTGTGAAA AATACATATC TTTTTTATAA AATTAGTGAA AACAAAACAT ATAAGAAACG CAAAATTAAG GTTCCATTTT
ATAAATATTA GTGTGAACAG ACAGACTGTT TCCTCAAACC AAACTGTACC TAAGATTCGT ATATTTTCAC CATGTTGTTA
GACTGGTTAG TTTGTGTCCA GTCCTAGAAT GACAAAACTG GTCTCCAATT TGAACTGGTC AAGAACTGAA AAATCTAGTT
CAATATTGGT CAACAAATTA AAACAAGCTG AAGGTTTTAA AGTGAAGATT TACTTTTTTC CTTAAAAGTA AAGATTGTCG
AGATTTTGTT ATTTTCTTTG TGAAAATGTT GAACATTATA CCTAAACATT ATGATTTATT TGATGTGTAA AATTTGAATG
TGAAAAAGTT AAATGAAGTT ATTATAAGTT TCTAGTATTG TTAACATGTT TCACCATTTC AACCATTGTC CAATCACCAG
TTTAACCTGT GATTGACTTT GAACTGGTGT CTGCGGTATA GTGACCGGTT CTGTTCCTTG ACCAACCGCT TCAATGGTCA
TCCATGTTAG TTTACTGCCT ATTGCTATTG ACACCATGAT GAAAATGTGT TGCAGGTGAG GCTTGGGAAG AATGGTGTGG
AGGAAGTTCT GGGATTGGGA CCTCTCTCTG ATTTTGAGAA ACAAGGCCTA GAGAGCCTTA AGGGTGAACT CAAATCATCA
ATTGAGAAGG GAATCAAATT TGCAAACCAG TAATTGAACA TCTCAAAGAC ATGTCTGGTA GGTAACTGGA TATTCCTAAG
AACCAAATCA AAATTTTGCA ATCTCAGAAC CATTGTTGTA TTGTTGCCCG CAGTGGTGGC GGCCTTGTTG TTTTGTTTAG
AGTAGGTATA CGCCATGGTT TAATAATTTA AGTCTGAGAG CATTTTGCCA AGGGATTCAT CAATCTTAAA ACCAGTTTTA
GGTGTTGACC ATTCAATTAA TAATTGTCCC TTTTAATGTG GTTTCACATT ATGTAATTGC AGGGTGTTAC ACCTCTTTTC
TTGTTGATTG TTTTAGCAGT CTTGTGAAAA CGTTTTCAAC CCTTTTGTGA GTGAGTTCAG TAAGATAAAA CTTGGACTTT
GTTGAAGTTT GATTACTTTT TGGACATGTT TTTATTTATT TCTTCTAATA TGGTTAAATT TTTGTAAAAG CTATAAAATT
ATATAGGTGG TTTTTAAATG ACAAGTGAG

>Vigan.06G054600.01
CTAAAAACCT GCAGGTTCAT ATTCACTCAC CCACTAACAC TCTCACCATA AATTGTGACC CTTCTCGCAC AAACTCTTTA
TTCTTTTTTC TCTCTCGAGT TTTTTCCGAA AAGCTGAGTC TCGAAGCTAA CACCAAAGAG AGAGAACAAT GGTGAAGCCA
TCCATGCTCA GATCTCTCCA CTCCGCCGCC ACCCGCGGCG TCTCTCACTT GTCCCGCCGT GGCTACGCCT CTGAGCCGGG
GCCGGAACGC AAGGTCGCTG TTCTCGGTGC CGCCGGTGGG ATCGGGCAGC CCCTTTCCCT TCTAATGAAG CTTAACCCCC
TCGTTTCTAG CCTCTCCCTC TACGATATCG CCGGAACCCC CGGCGTTGCC GCCGATGTCA GCCACATTAA CACCAGATCT
AAGGTTGTAG GGTACCAAGG TGAGGAAGAG CTTGGCAAAG CTTTGGAGGG TGCAGATGTT GTCATAATTC CTGCTGGTGT
GCCCAGAAAG CCTGGAATGA CCCGGGATGA TCTTTTTAAT ATCAATGCTG GCATTGTCAA GGCACTTTGT ACTGCTATTT
CTAAATACTG CCCCCATGCC CTTGTTAACA TGATAAGCAA TCCTGTGAAC TCCACTGTTC CTATTGCGGC TGAAGTTTTC
AAGAAAGCTG GAACATATGA TGAGAAGAGA CTATTTGGTG TAACCACCCT TGATGTCGTC AGGGCAAAAA CTTTCTATGC
TGGGAAAGCC AATGTTCCAG TTGATGGTGT CAATGTGCCT GTTGTGGGTG GCCATGCAGG CATTACTATT CTACCCCTAT
TTTCTCAAGC TACACCAAAA GCCAATCTTG ATGATGATGT CATCAAGGCT CTTACAAAGA GGACTCAAGA TGGAGGAACA
GAAGTTGTGG AAGCTAAGGC TGGAAAGGGT TCTGCAACTC TGTCCATGGC CTATGCTGGT GCCCTTTTCG CTGATGCTTG
TCTCAAGGGC CTTAACGGGG TTCCAGATGT TGTTGAGTGC TCATTTGTGC AATCCACTGT CACTGAACTT CCTTTCTTTG
CTTCAAAGGT GAGGCTTGGG AAGAATGGTG TGGAGGAAGT TCTGGGATTG GGACCTCTCT CTGATTTTGA GAAACAAGGC
CTAGAGAGCC TTAAGGGTGA ACTCAAATCA TCAATTGAGA AGGGAATCAA ATTTGCAAAC CAGTAATTGA ACATCTCAAA
GACATGTCTG GTAGGTAACT GGATATTCCT AAGAACCAAA TCAAAATTTT GCAATCTCAG AACCATTGTT GTATTGTTGC
CCGCAGTGGT GGCGGCCTTG TTGTTTTGTT TAGAGTAGGT ATACGCCATG GTTTAATAAT TTAAGTCTGA GAGCATTTTG
CCAAGGGATT CATCAATCTT AAAACCAGTT TTAGGTGTTG ACCATTCAAT TAATAATTGT CCCTTTTAAT GTGGTTTCAC
ATTATGTAAT TGCAGGGTGT TACACCTCTT TTCTTGTTGA TTGTTTTAGC AGTCTTGTGA AAACGTTTTC AACCCTTTTG
TGAGTGAGTT CAGTAAGATA AAACTTGGAC TTTGTTGAAG TTTGATTACT TTTTGGACAT GTTTTTATTT ATTTCTTCTA
ATATGGTTAA ATTTTTGTAA AAGCTATAAA ATTATATAGG TGGTTTTTAA ATGACAAGTG AG

>Vigan.06G054600.01
ATGGTGAAGC CATCCATGCT CAGATCTCTC CACTCCGCCG CCACCCGCGG CGTCTCTCAC TTGTCCCGCC GTGGCTACGC
CTCTGAGCCG GGGCCGGAAC GCAAGGTCGC TGTTCTCGGT GCCGCCGGTG GGATCGGGCA GCCCCTTTCC CTTCTAATGA
AGCTTAACCC CCTCGTTTCT AGCCTCTCCC TCTACGATAT CGCCGGAACC CCCGGCGTTG CCGCCGATGT CAGCCACATT
AACACCAGAT CTAAGGTTGT AGGGTACCAA GGTGAGGAAG AGCTTGGCAA AGCTTTGGAG GGTGCAGATG TTGTCATAAT
TCCTGCTGGT GTGCCCAGAA AGCCTGGAAT GACCCGGGAT GATCTTTTTA ATATCAATGC TGGCATTGTC AAGGCACTTT
GTACTGCTAT TTCTAAATAC TGCCCCCATG CCCTTGTTAA CATGATAAGC AATCCTGTGA ACTCCACTGT TCCTATTGCG
GCTGAAGTTT TCAAGAAAGC TGGAACATAT GATGAGAAGA GACTATTTGG TGTAACCACC CTTGATGTCG TCAGGGCAAA
AACTTTCTAT GCTGGGAAAG CCAATGTTCC AGTTGATGGT GTCAATGTGC CTGTTGTGGG TGGCCATGCA GGCATTACTA
TTCTACCCCT ATTTTCTCAA GCTACACCAA AAGCCAATCT TGATGATGAT GTCATCAAGG CTCTTACAAA GAGGACTCAA
GATGGAGGAA CAGAAGTTGT GGAAGCTAAG GCTGGAAAGG GTTCTGCAAC TCTGTCCATG GCCTATGCTG GTGCCCTTTT
CGCTGATGCT TGTCTCAAGG GCCTTAACGG GGTTCCAGAT GTTGTTGAGT GCTCATTTGT GCAATCCACT GTCACTGAAC
TTCCTTTCTT TGCTTCAAAG GTGAGGCTTG GGAAGAATGG TGTGGAGGAA GTTCTGGGAT TGGGACCTCT CTCTGATTTT
GAGAAACAAG GCCTAGAGAG CCTTAAGGGT GAACTCAAAT CATCAATTGA GAAGGGAATC AAATTTGCAA ACCAGTAA

>Vigan.06G054600.01
MVKPSMLRSL HSAATRGVSH LSRRGYASEP GPERKVAVLG AAGGIGQPLS LLMKLNPLVS SLSLYDIAGT PGVAADVSHI
NTRSKVVGYQ GEEELGKALE GADVVIIPAG VPRKPGMTRD DLFNINAGIV KALCTAISKY CPHALVNMIS NPVNSTVPIA
AEVFKKAGTY DEKRLFGVTT LDVVRAKTFY AGKANVPVDG VNVPVVGGHA GITILPLFSQ ATPKANLDDD VIKALTKRTQ
DGGTEVVEAK AGKGSATLSM AYAGALFADA CLKGLNGVPD VVECSFVQST VTELPFFASK VRLGKNGVEE VLGLGPLSDF
EKQGLESLKG ELKSSIEKGI KFANQ*