GBrowse Details

Vigan.06G049600.01

Basic Information:
Name: Vigan.06G049600.01
Multiple alignment
Variant Information
Position: Chr06:6372304..6376155 (+ strand)
Length: 3852
Functional Information:
Description: Similar to Uncharacterized protein. [I1LSW2, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: protein binding (GO:0005515)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Bromo adjacent homology (BAH) domain (IPR001025)
Zinc finger, PHD-type (IPR001965)
Zinc finger, FYVE/PHD-type (IPR011011)
Zinc finger, RING/FYVE/PHD-type (IPR013083)
Zinc finger, PHD-type, conserved site (IPR019786)
Zinc finger, PHD-finger (IPR019787)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:285.19,418.29,27.19,19.85,28.17,89.05,35.94,19.34
Automatic updates:
Name: NM_001255699 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100810424), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255849 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max BAH and coiled-coil domain-containing protein 1-like (LOC100800993), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:6372304..6372676 (+ strand)
Length: 373
Type: five_prime_UTR
Position: Chr06:6372677..6372749 (+ strand)
Length: 73
Type: CDS
Position: Chr06:6372879..6373221 (+ strand)
Length: 343
Type: CDS
Position: Chr06:6373782..6373850 (+ strand)
Length: 69
Type: CDS
Position: Chr06:6374626..6374764 (+ strand)
Length: 139
Type: CDS
Position: Chr06:6375806..6375832 (+ strand)
Length: 27
Type: CDS
Position: Chr06:6375833..6376155 (+ strand)
Length: 323
Type: three_prime_UTR

>Vigan.06G049600.01 class=Sequence position=Chr06:6372304..6376155 (+ strand)
GTAAGATTTG TTTCCAAAAG TCCACCATTA AACAAGAAAA TTATGGTTTT TCCACAAATG TGACATGTCA CAAGATGAAT
GGAGTGGATT AGGAAATTAC TTAGCGCAGA TCTCAGGACA AGAAAAATTT ACGAAGCAGT CAAATGTAAT GAACCGACCA
AGAATCGTCG CATTACATTC CCAAAAAGCC ACAGTAATAA AATCGCAGGC GAAGCGTCAC AGTCACTCCC TTCCCTCACA
GAAAAAAAGT GTCACCCCTC ACCCAAACCC ACACCTTAGG GTTCCTCAGT TCCTCTTCTT CTCCTTTTAA CCCAACAACA
AGCCCTCTGA AAAAAAAAAT TCCTCATTCC CCAAAACACC CTTCGCGCAC CGCATGGCGA AAACGAGGCC AGGCAGAAAG
GACTTGGACT CGTACACCAT AAGAGGAACC AACAAGGTCG TCCGAGGTAA CACACACAAC CACCCTTTGC GTTTTCCTCG
TTCAAAACGC TTCCTTTTCC TGTTTTCGGG CCTGCCCATG ATGTTTTTTT GAGATGGGGT TGTCGTTGAC AGCGTTTGGT
TCTTTGGTGC TGCAGCCGGT GATTGCGTTC TGATGCGGCC ATCGGACACG TCGAAGCCCC CTTACGTGGC GCGCGTGGAG
AAGATCGAGC AGGACAACAG GAACAACGTG AAGGTGCGTG TGAGGTGGTA CTACAGACCC GAAGAGTCCA TTGGGGGTCG
CAGACAGTTC CATGGTGCCA AAGAGCTTTT TCTCTCCGAC CACTATGATG TGCAGAGTGC TCACACCATA GAAGGAAAAT
GCGTAGTACA CTCTTTCAAG AACTACACCA AGCTGGAGAA TGTGGGTTCT GAGGATTACT ATTGTAGATT TGAGTACAAG
GCTGCCACTG GGGCTTTCAC TCCTGACCGT GTTGCTGTGT GAGTTTCCTC TCATATATGT TTTTCTCTAT AAATAATCTG
ATTTTTGTCC TATGAAAATT TAATGCAGAA ACACATTTAT GTACATTGTT TTGTTATAAT TTTAAGTATC TACATTTTTC
ATTGTAAAGG ATTTTTAGTC ATTATAAAAG AATTAGTACA GTTTTTACTA TTAACATTTT AACAGAAACA CGAAATTTTT
GTATGGGGTT TTAGTCTTTA CAACAATTTA ATACATTTTC GCATTTGTGT TTTGAGTGAA CTCGAGATTT TAAATTTACA
TTTTGACAGA CACCAGATTT TGGCATGTGG TTTTTAGTCT TTAAAGCAAT TTAATACATT TTAGTAGATA TATTTTAAGT
GAAAGTCGAG ATTTTTGGTA AATGTAAGTA AAAACCTATT AAATTTTTCA GGTATTACTA TTAAAATTTG GGTTATGTTG
GGGGATCAAA AACATGTCTT ACCATTTTAT GTATATTTTG TTTTGGGTTA TTGATTGTGT GGAAGGGGAT TTTGGGTTTT
AGAACTAAAG GTTTGTTTTT TTGGCTTGTG TTTTGAAGGT ATTGCAAGTG TGAGATGCCA TATAACCCGG ATGACCTCAT
GGTACAATGT GAAGGGTGCA AGGATTGGTA AAATCAATGT GTTCTGCCTG ACTTTCTTTA CTAGTATTGT GCTTGGTTTA
TTTTTTGGGT GTTTATTTTT GTATGTTGAA TTTGAGCATT GGATGCTATT TACTGGGTTG AAGGAATTAT CAGTTATGTG
ATCTCACCAC CTGCAGAATG AGTGGCCTAA AGGGTGTTAG AAAGTTGTAA GTTCTATTGG AAGCTCATGT ATGGTCCTAA
AACTCTTGTA TAGAGAACTG CATCTACCTG TGCAAGCCCT TTGCATGTTG GTCTTGAAAA AGCATTTTAC TTGTGAAGTA
AAAGTAAAAC AAATCAAAGA AGAAACGGGT GAATATATAA TGCGTTGTAC ATTCACTTGT GACATCTGAG CTTCACAGCT
AAAAGTTCAG TGACGGATGA AATTTATGTC TGCCCGAAAG TGTCAATGTG CTTGTGGGGG GCTGTTGTTA TAATGATTAT
GGGTTCTGTC GTTTCTTTTA TTTCAATATA TGCGTGAGCC AATAGAAATT TGATGATGCA GAGGCTTATT CCATCTGTTG
ATTGTTTCCA TGCATGTTTT GAAAAGTATA CTTGGACATG TATTTTCATA TAACGTTTAT GAAATACGGG AGCTGCAAAT
TACTGCAGTC ATCATCAACA TAGAACTTTG TGGACATAAC TTCGATGTGA ATTGTAGAAG AGTTAAAATC TAATGAGTGT
CCAAGACTCA CATTCTTTAC ATGTTGAGTG TCTCTTTATG CTCTATAGAA CACACATTTC AATCTTTGTA GGTTTTTTGT
AGGTATCATC CTGCTTGTGT GGGCATGACC ATCGAAGAAG CAAAGAAATT AGATCATTTT GTGTGTTCAG AATGTTCATC
TGATGATGAT ATGAAGAAAC CGCAAGCTAC ATTTTCTGCA TCACCAGGAG CCGATGGCAA GGTGACTTCT TGTGTCCAAC
ACCAAATAAT TGTTACTTAA TGTTCCCAGC ATATGACTAA TACATTAGTT TTCTATTATC TAGTTTCTGG CAACGATATG
GGGAGGGAAA CGGGACACAT TGCTGAAAAA GGAATAAATG ATTTAATGGA AAAAAAAATC TCTTTAAAAT CTAACCCTTA
TACAGCTAGT TTCTAAAATG ACCATAGATT GCAGCTAGTT TTTCACTAGT TAGTGTGGAC GGAGACACAT GAATAAGTAA
TGCACATGTG TAAGTTAACA GTATCATGTG CATTTCTCTC CTATTTTGAT ACCAAACTTT TCATAGTTCT GTCTTATTTG
CTGTCCTTAA TCTGAAACAC TGTGTGCATT GCTGGAATAA AAATATGTGG GTTGGCTAAA TGTATACCTA TGCTATTTTT
AGTTGCTGCA CTGTTGTCTG GCAGGTATGT ATTCTTTTTA TAGTCATTGG TAATGTATTG AAGGCTGTAA TTTTCTTTCT
TTTGAGATAT AGGCTTAGCA ATGATGTTTA TCTTTGTGAA CCTTCGTTTA ATTGATATCC TTATGACAAT GTTACACTCA
GTTTGTGAGG GGGTTATACA TGTAGGGCTA TTTATTTTGT TCACTACTTG TCTTATATCA ATTGCTATTG AATTTTTGGA
GGGGTCAATG GTGCTGGCAC AGTGAGGTTA TTTATTCCTG ATGAATGCAA TTTCATCCTC ATGTCTGTTT TATGATAGGC
TCAAGTTAAT ATGGGACTCT GATTGATTAT ATTCAGTAAG ATATTTATTA CCACAATTTG GAAACTCTCA TCAGATGCCC
TTTTGTTTGA AAAAGTGTTT AAGAAAACAA ACTCTCGAAA CCAATAAGCA AAAGAGAAGT GCCCTTTTTG TAATTATGAG
TAAAAATTGA TTTTTTTTTT CTCAAATCAA ATGGGGTCAC AAAATAGTTG GTAGACAGTT GGTTCATTGT TGAGGCACAG
TGACATTTTA CTTTTTGGAT TGTGGTTTTA TATTATTGGA TTTCAAATTT TGAATTTTGC AGGTGGAGCC CAAGCGGCGA
AAGAGATGAC CATAATGCAG TAGTAACCTT GTTTGGAGGC GTGAGTGACT CTTGCTGAAT TTGGGTGGCA CTCTATGGTA
GCTTTTGTGT GTTGTACAGC TTCATCTAGA GGCTATGAAC ATTTCATTAT GTATCTGACT TAGCTTATAT TATGTATCTA
TTGGTCGTAG ATTTTATAAC TGTGACATTC CCTCAAGTGA ATTCCGATCC AAGTGTTTAT TATTCTTCAG ATGATGACAT
CAAAACCTAA AATACTAAGC ACAGAGAAGC GGTTAGTTTT AAATGTTGGT TCGTCTTTAG CACTTAGCTT TTTGTTCCTC
CCTATTGCTC AC

>Vigan.06G049600.01
GTAAGATTTG TTTCCAAAAG TCCACCATTA AACAAGAAAA TTATGGTTTT TCCACAAATG TGACATGTCA CAAGATGAAT
GGAGTGGATT AGGAAATTAC TTAGCGCAGA TCTCAGGACA AGAAAAATTT ACGAAGCAGT CAAATGTAAT GAACCGACCA
AGAATCGTCG CATTACATTC CCAAAAAGCC ACAGTAATAA AATCGCAGGC GAAGCGTCAC AGTCACTCCC TTCCCTCACA
GAAAAAAAGT GTCACCCCTC ACCCAAACCC ACACCTTAGG GTTCCTCAGT TCCTCTTCTT CTCCTTTTAA CCCAACAACA
AGCCCTCTGA AAAAAAAAAT TCCTCATTCC CCAAAACACC CTTCGCGCAC CGCATGGCGA AAACGAGGCC AGGCAGAAAG
GACTTGGACT CGTACACCAT AAGAGGAACC AACAAGGTCG TCCGAGCCGG TGATTGCGTT CTGATGCGGC CATCGGACAC
GTCGAAGCCC CCTTACGTGG CGCGCGTGGA GAAGATCGAG CAGGACAACA GGAACAACGT GAAGGTGCGT GTGAGGTGGT
ACTACAGACC CGAAGAGTCC ATTGGGGGTC GCAGACAGTT CCATGGTGCC AAAGAGCTTT TTCTCTCCGA CCACTATGAT
GTGCAGAGTG CTCACACCAT AGAAGGAAAA TGCGTAGTAC ACTCTTTCAA GAACTACACC AAGCTGGAGA ATGTGGGTTC
TGAGGATTAC TATTGTAGAT TTGAGTACAA GGCTGCCACT GGGGCTTTCA CTCCTGACCG TGTTGCTGTG TATTGCAAGT
GTGAGATGCC ATATAACCCG GATGACCTCA TGGTACAATG TGAAGGGTGC AAGGATTGGT ATCATCCTGC TTGTGTGGGC
ATGACCATCG AAGAAGCAAA GAAATTAGAT CATTTTGTGT GTTCAGAATG TTCATCTGAT GATGATATGA AGAAACCGCA
AGCTACATTT TCTGCATCAC CAGGAGCCGA TGGCAAGGTG GAGCCCAAGC GGCGAAAGAG ATGACCATAA TGCAGTAGTA
ACCTTGTTTG GAGGCGTGAG TGACTCTTGC TGAATTTGGG TGGCACTCTA TGGTAGCTTT TGTGTGTTGT ACAGCTTCAT
CTAGAGGCTA TGAACATTTC ATTATGTATC TGACTTAGCT TATATTATGT ATCTATTGGT CGTAGATTTT ATAACTGTGA
CATTCCCTCA AGTGAATTCC GATCCAAGTG TTTATTATTC TTCAGATGAT GACATCAAAA CCTAAAATAC TAAGCACAGA
GAAGCGGTTA GTTTTAAATG TTGGTTCGTC TTTAGCACTT AGCTTTTTGT TCCTCCCTAT TGCTCAC

>Vigan.06G049600.01
ATGGCGAAAA CGAGGCCAGG CAGAAAGGAC TTGGACTCGT ACACCATAAG AGGAACCAAC AAGGTCGTCC GAGCCGGTGA
TTGCGTTCTG ATGCGGCCAT CGGACACGTC GAAGCCCCCT TACGTGGCGC GCGTGGAGAA GATCGAGCAG GACAACAGGA
ACAACGTGAA GGTGCGTGTG AGGTGGTACT ACAGACCCGA AGAGTCCATT GGGGGTCGCA GACAGTTCCA TGGTGCCAAA
GAGCTTTTTC TCTCCGACCA CTATGATGTG CAGAGTGCTC ACACCATAGA AGGAAAATGC GTAGTACACT CTTTCAAGAA
CTACACCAAG CTGGAGAATG TGGGTTCTGA GGATTACTAT TGTAGATTTG AGTACAAGGC TGCCACTGGG GCTTTCACTC
CTGACCGTGT TGCTGTGTAT TGCAAGTGTG AGATGCCATA TAACCCGGAT GACCTCATGG TACAATGTGA AGGGTGCAAG
GATTGGTATC ATCCTGCTTG TGTGGGCATG ACCATCGAAG AAGCAAAGAA ATTAGATCAT TTTGTGTGTT CAGAATGTTC
ATCTGATGAT GATATGAAGA AACCGCAAGC TACATTTTCT GCATCACCAG GAGCCGATGG CAAGGTGGAG CCCAAGCGGC
GAAAGAGATG A

>Vigan.06G049600.01
MAKTRPGRKD LDSYTIRGTN KVVRAGDCVL MRPSDTSKPP YVARVEKIEQ DNRNNVKVRV RWYYRPEESI GGRRQFHGAK
ELFLSDHYDV QSAHTIEGKC VVHSFKNYTK LENVGSEDYY CRFEYKAATG AFTPDRVAVY CKCEMPYNPD DLMVQCEGCK
DWYHPACVGM TIEEAKKLDH FVCSECSSDD DMKKPQATFS ASPGADGKVE PKRRKR*