VIGGS:GBrowse

Vigan.06G037400.01

Basic Information:

Name:	Vigan.06G037400.01 Multiple alignment Variant Information
Position:	Chr06:4336466..4338770 (- strand)
Length:	2305

Functional Information:

Description:	Similar to Cytokinin-specific binding protein. [Q9ZWP8, Vigna radiata]
GO:	Biological Process: defense response (GO:0006952)
GO:	Biological Process: response to biotic stimulus (GO:0009607)
InterPro:	Bet v I domain (IPR000916)
	START-like domain (IPR023393)
	Bet v I type allergen (IPR024949)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.22,5.80,4.74,1.75,1.37,2.08,48.70,5.18

Automatic updates:

Name:	NM_001376196 NCBI(nuccore)
Organism:	Vigna radiata
Description:	Vigna radiata phytohormone-binding protein CSBP (CSBP), mRNA.
PubMed ID:	26177103 NCBI(pubmed)
PubMed ID:	9874249 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr06:4336466..4336921 (- strand)
Length:	456
Type:	three_prime_UTR

Position:	Chr06:4336922..4337208 (- strand)
Length:	287
Type:	CDS

Position:	Chr06:4338474..4338654 (- strand)
Length:	181
Type:	CDS

Position:	Chr06:4338655..4338770 (- strand)
Length:	116
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

>Vigan.06G037400.01 class=Sequence position=Chr06:4336466..4338770 (- strand)
AAAAGCATAT TTTTCATATT TATATGTGGC TGAGATAAAA AAGATTCCCA TCGAAGTACT ACATATACAC ACATAGCAGT
GCAGTCTCTG TGTGAAAGCA CGTTTTGTTA AGAGCCATGG TAAAGGAATT CAACACCCAA ACAGAACTTA GTGTGAGATT
GGAAGCCCTT TGGGCAGTGC TATCTAAGGA TTTCATAACA GTGGTTCCAA AGGTACTTCC TCATATTGTG AAAGATGTGC
AAGTGATTGA AGGTGATGGA GGGGTTGGAA CAATCCTCAT CTTTAATTTT TTTCCTGGTG AGTTTTGCTC TCGTATTTCT
GAGTTTTGCT CTCGTATTTC TGAGTTGGTA GTTTAAATTA TTTCATATTA TTAATTAATC AAAAATCTAA TTTAATATTT
AACTTTTTGA AATAACTTTG TATAAGAAAC TTATGCTTTT TGTTTTTGAG CCGTTTTAGA TTTCTAGTTC TGCAATCTAC
CTCAAAATTG ATGAATTTTT CACCCTGTCA ATTTCTTTTT ACTTTTACTG TATTAGATAA GAATTTGATT TTTAAAAAAC
AGAATTCTAA ACATGCTTTT GGTGTTTCTA TTAAAAACAA TAATGTTAAT ATAAAATTAT GGTTGTTCGG AAACCAAATT
TTGAATTAAC ACGGTAAAAG GTTGAGTAAA TAGAAACTAT AGTATGATAT TTTGATAAAA AGAATTTGAT AGTGTTGTAT
TTCTGTAAAG AAATTCCAAA ATTAGTCATC CATTATGGGA AACTTCATTT CTTTTCAACC CTGAAGGAAA TATATTGCAG
ATTGAAAAAT GACTAGCACA GAGAATATGT AAAATAAAAA ATTTTCTTTA TTTAATAACA AAGAAAATTC TCAATTTTTT
TAAGTATTTT ATTTAGTTAA ATAAGAGAAG AAAAATAAAA CGAAAATAGT GAAAAGAATT TAATTTTCCA AAATCAGTCA
TTTCTCATCT CTTCCTAATT ATATATGTGA TCAGTGACTT TATAGTTATA CAATTACTTA ATTTTAATTA AGTAAATTAT
TTTTCAAATG ATGGTTTTGT TTCATTTTTT GTTTTCTTTA CAATGTCTCG TGAAGATCAA GTATAAATTT TCTATATCTA
TTTTTTTAAA CATTAGTACT TGAGTAGTTT GATATTACGA ACTGGTATGA ACCGATAAAG TTTTTTCTTT ATCAATAATA
AAGGATATAT TAATAGATAG ATTGTACCAT GTCATTTAGG GTTTAGTATA AAAAAATTAT TCTACGCTGT TACTCTGTTA
TATTTTTATA TTTGATTTTA TCATGCCATA GTTATTACTT TTAATTAATT ACAAAAAGTA AAAAATAAAA TCTAAAACGT
GTCAAATATA AATTAATGAC AAAATATATA TAAACTAATG ACAAAAATAG TATTAAACCT TTGCAAAAAG GAACAAACAT
ATCTACCAAA ACTATTTTGT CAATTTTTAA TCATATTGAT TTCAAAGTTA TACCATATAA AAATTTATAG TTTTATTTAT
AAATCCAATA ATTGTGTTTT AACTTTTGGG AATTTATCTT AGACGTGTCA CCAAGCTACC AAAGGGAGGA GATCACAGAG
TTTGATGAGA GTTCACATGA AATAGGTTTG CAAGTGATTG AAGGAGGTTA TCTAAGTCAA GGGTTGTCAT ATTACAAGAC
AACTTTTAAA CTATCTGCAG TTGAAGAGGA TAAGACTTTG GTCAACGTGA AAATCTCTTA CGACCATGAA TCCGACATAG
AAGAAAAGGT CACACCTACG AAGACATCAC AGTCCACTTT ATTCTATCTT AGACGTCTAG AAAAATACCT GTCGAATGGC
TCTGCTTGAA GAAAAAACAT TTATTGAAAT ATTATATAGA AAAATAGAAA GAATGATCAG ATGTTGTTTT TACTATTTTT
CTATTATACT TATGAATACA TAAGTAAAAG GAGACATGAA AATACACTCT ATTTTCTAAA GCCAAACATC TCCTAGTATT
GTAATATATG TGGGTTAGAG TAGTTGCATC ATTTTGGTTT TGAATAATGT TTTACTATTT TCAGTCGAGT AAGAAAAACA
ATGTTAATTG GTCTTTGTAA CATAATTTGA GAGCTCTTTG TTACGATCGA ATTGATTTTC TTATGTGTTT GACGCACTGT
GTTTACAATA ATGAATTTGA AGAAGAATGA GTGAATAGAT TTGAAGAGAT TTAAGAGTAA ATTGATTGTT ATTCTTTTAA
ACAGATTTGG AAGTAAGTAA GGGTGAATTT GAAAGTAAAG TGTTTGAAAA TTACTGTAGG ATTTG

[show][hide][copy]TRANSCRIPT

>Vigan.06G037400.01
AAAAGCATAT TTTTCATATT TATATGTGGC TGAGATAAAA AAGATTCCCA TCGAAGTACT ACATATACAC ACATAGCAGT
GCAGTCTCTG TGTGAAAGCA CGTTTTGTTA AGAGCCATGG TAAAGGAATT CAACACCCAA ACAGAACTTA GTGTGAGATT
GGAAGCCCTT TGGGCAGTGC TATCTAAGGA TTTCATAACA GTGGTTCCAA AGGTACTTCC TCATATTGTG AAAGATGTGC
AAGTGATTGA AGGTGATGGA GGGGTTGGAA CAATCCTCAT CTTTAATTTT TTTCCTGACG TGTCACCAAG CTACCAAAGG
GAGGAGATCA CAGAGTTTGA TGAGAGTTCA CATGAAATAG GTTTGCAAGT GATTGAAGGA GGTTATCTAA GTCAAGGGTT
GTCATATTAC AAGACAACTT TTAAACTATC TGCAGTTGAA GAGGATAAGA CTTTGGTCAA CGTGAAAATC TCTTACGACC
ATGAATCCGA CATAGAAGAA AAGGTCACAC CTACGAAGAC ATCACAGTCC ACTTTATTCT ATCTTAGACG TCTAGAAAAA
TACCTGTCGA ATGGCTCTGC TTGAAGAAAA AACATTTATT GAAATATTAT ATAGAAAAAT AGAAAGAATG ATCAGATGTT
GTTTTTACTA TTTTTCTATT ATACTTATGA ATACATAAGT AAAAGGAGAC ATGAAAATAC ACTCTATTTT CTAAAGCCAA
ACATCTCCTA GTATTGTAAT ATATGTGGGT TAGAGTAGTT GCATCATTTT GGTTTTGAAT AATGTTTTAC TATTTTCAGT
CGAGTAAGAA AAACAATGTT AATTGGTCTT TGTAACATAA TTTGAGAGCT CTTTGTTACG ATCGAATTGA TTTTCTTATG
TGTTTGACGC ACTGTGTTTA CAATAATGAA TTTGAAGAAG AATGAGTGAA TAGATTTGAA GAGATTTAAG AGTAAATTGA
TTGTTATTCT TTTAAACAGA TTTGGAAGTA AGTAAGGGTG AATTTGAAAG TAAAGTGTTT GAAAATTACT GTAGGATTTG

[show][hide][copy]CDS

>Vigan.06G037400.01
ATGGTAAAGG AATTCAACAC CCAAACAGAA CTTAGTGTGA GATTGGAAGC CCTTTGGGCA GTGCTATCTA AGGATTTCAT
AACAGTGGTT CCAAAGGTAC TTCCTCATAT TGTGAAAGAT GTGCAAGTGA TTGAAGGTGA TGGAGGGGTT GGAACAATCC
TCATCTTTAA TTTTTTTCCT GACGTGTCAC CAAGCTACCA AAGGGAGGAG ATCACAGAGT TTGATGAGAG TTCACATGAA
ATAGGTTTGC AAGTGATTGA AGGAGGTTAT CTAAGTCAAG GGTTGTCATA TTACAAGACA ACTTTTAAAC TATCTGCAGT
TGAAGAGGAT AAGACTTTGG TCAACGTGAA AATCTCTTAC GACCATGAAT CCGACATAGA AGAAAAGGTC ACACCTACGA
AGACATCACA GTCCACTTTA TTCTATCTTA GACGTCTAGA AAAATACCTG TCGAATGGCT CTGCTTGA

[show][hide][copy]PROTEIN

>Vigan.06G037400.01
MVKEFNTQTE LSVRLEALWA VLSKDFITVV PKVLPHIVKD VQVIEGDGGV GTILIFNFFP DVSPSYQREE ITEFDESSHE
IGLQVIEGGY LSQGLSYYKT TFKLSAVEED KTLVNVKISY DHESDIEEKV TPTKTSQSTL FYLRRLEKYL SNGSA*