GBrowse Details

Vigan.06G030100.01

Basic Information:
Name: Vigan.06G030100.01
Multiple alignment
Variant Information
Position: Chr06:3473156..3477669 (+ strand)
Length: 4514
Functional Information:
Description: Similar to uncharacterized protein. [C6SXU0, Glycine max]
GO: Molecular Function: cysteine-type endopeptidase inhibitor activity (GO:0004869)
InterPro: Proteinase inhibitor I25, cystatin (IPR000010)
Proteinase inhibitor I25, cystatin, conserved site (IPR018073)
Cystatin (IPR027214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1540.80,649.05,105.73,79.34,50.80,188.14,53.08,74.79
Arabidopsis thaliana homolog: AT3G12490.2
Automatic updates:
Name: NM_001250514 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499887 (LOC100499887), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr06:3473156..3473345 (+ strand)
Length: 190
Type: five_prime_UTR
Position: Chr06:3473346..3473582 (+ strand)
Length: 237
Type: CDS
Position: Chr06:3475020..3475239 (+ strand)
Length: 220
Type: CDS
Position: Chr06:3475732..3475877 (+ strand)
Length: 146
Type: CDS
Position: Chr06:3477305..3477442 (+ strand)
Length: 138
Type: CDS
Position: Chr06:3477443..3477669 (+ strand)
Length: 227
Type: three_prime_UTR

>Vigan.06G030100.01 class=Sequence position=Chr06:3473156..3477669 (+ strand)
CATCTCCACA TCAAGTTGCT TAAGACTTAA GAAAAGCATT AAACACAGCA CCGAGAGTGA GAGAAGCAAC GACGCGGCGT
TCAAACTAAG CTACTAATAA ACGCATCGCA GTTATTACCC TCTGTTTGGC GCTACAAACG AAAACAAAGA AACCGACAAG
CGCTTTATTC CAGAACAAGA AGGAAACCGA ATGAGAGCAT CAACCTCTTC AATTCCCATT CCATCGTCGT CTTCGCGTTT
CTCCATCTTC TTCTTCCTTC TATTCGCGCT CCTCGCCCTT CGATCTTCAT CCGGCGACTG CTCCCACTTC CAACACCAGG
CACCGATGGC CACTGTCGGA GGCGTGCGTG ACTCCCCAGG GTCTCAGAAT AGCGTCGACA CTGAATCTCT CGCGCGATTC
GCGGTCGACG AGCACAACAA GAAGCAGGTT TATCTATTGT TTTATTTATG TTGTGTTTGG AATAAAATTT CTAAAGCACT
TTTGCAATTG TGACGAGTTC CAATCCAACA ACTGAAGAAG GATAAACGTT ACGGTGTTCC TGGCAAGTGC GTTATCAACA
AAACTATTAT TTTAATTACA CTTTGTTTAA AATTGAATAT TAAAAAGTGC TTCTTATTCA ATTCTAAAGG GATTAAATTG
TCCAATTTTT GAGTTCCTTA AAATTAAGGG TTGAAAATAG TATTCATTCA ATTTTAAAGA TATTATTGAA AATTTAAAAA
CTAAAACTGG AGATGCTTTT ATAACACTGG TTAAGGAACT GAAAAGAATT TTATTTTATT AGAGAAATCA TGAAACATGA
TTTAAGGACT AGAAATAGTA GAATGGGGAG ATTGTATTAT TACAACGATA CACTAGAAAT CATGAAAGAA CGTGTTAACA
TTTTCTTCTT TTATGTCCTT TTTGGTTGAG CGGACGGGAA GGATGAGGAA GCAGATAGTT GTTATGCTTT CTTTGAGTGG
AAGAAAAGAA AGAAGAAATA ATTTTAAAGA ACAGTTAAAT GCAGTGTAAT ATTTATCCTC TATGTCTCTT AATTTCTATA
TCTTTCTTAT TCTTTTTTTT GTTTCTCTTC AACCAAATAC CTTCTTATAA CTTGGTTTAG TCGCCCCTGT TTCTCTCCTT
TTAGCCAAAA AGAAAAGAAG TTGATCATAT ATATCTTTGA AGTTTTAATA TATCAGCAGG GCAATGAACT GTTTGAGAAT
TTTTAATTAG GTTCAAAACT AAAAAGAAAA GAAGTTGATC ATTTGCGAAT ACGACGATGA AGATATATTT TTTTTACAAT
AAACTTAGCT AAATCTTAGT CTAATAATTT TTTTTTTCTA AAAGAAAAAA CACGTAACAG TAAGGAAATG TTTCAAAAAA
TATCTGTGGT ATAAAACAAT ATTATAATTA TAACTAAATA ATTAAAAAAT CATCCTTAAT AATCATGCTT ATTTCAAAAC
TAACCAAATT TTAATTTAAG TATGTTAAAT CTTGTTCACT GATCAATACA ACAAAGGTAA GTATGTTGAA TCTTGTTCTT
GATCAATACA ACAACGGTAA GTATGTTGAA TCTTGTTCTT GATCAATACA ACAACGGTAA TAGCCTTGTC CTATTTTTTC
TGTTTGTTTA TCAGTAGCCT TGTCCTATTA GTTACGTCAG TTAACAAATT CTCAAGAATA TCATTCACAA TATGCGACTA
TATCTCATGC ATCTGTTGTG TATTTCTGGT GATGATTATA GCACAGGTTA TTTGGATTGC TGAGCTTTCT TGTTATTGTG
ATCAGTGATC TCAGTAGTTC TTTCTTTTTC CTTATCCTTT TTTATGTTCA ATATGATGAA TTTGGTGGGC TAAAACTGGT
GACTTGTGTT GGTTGGTGTT GAAGAATTCG CTTCTGGAGT TTGCTAGGGT TGTGAAGGCA CAGGAACAGG TTGTTGCTGG
TACCGTGCAT CACCTTACTC TCGAGGCTAT TGAGGCTGGT GAGAAGAAGC TCTATGAAGC TAAGGTATGG GTGAAACCAT
GGCTGAACTT CAAAGAACTT CAAGAGTTCA AGCCTGCCGG TGTTGCATCA CCATTTACCT CTGCTGACCT TGGTGTCAAA
AAGGGTATGA CATTTTCTAA ACCAAGCATT TGTAAACTTT ATAGGACTAA GAACAGTTCT ATTTAGGATA TTTATTAATT
ATTTTTATAT TCTCCTGAAA TTGATGCTGT ACTTACAGGG AAAGTGTCAT AATTATATTG GTAATTTATA TCTTGTGGGA
ATTTAGATCC TCATATTTAG TGCAACATTA GGATATGAAT ATGTTGTCTT CTCTTTTAAG GTGCTGTAAA TAGTCATAAA
CTGATAACTT ATGTAAATAC TGAAAGAGGC TTTTAGGAGT GTAAATCTGA TTCAATCTAG ATAAACCCCA TCTTGGAGTT
GCTTTCCGTA TGTTGGATTA GAAATAGCCA TGAACTGACA ATTAATGTAT GAAGTTTGTA CCATTTACCG TGCAAATGTT
TTGCTGCTTC CTTTCTCGTG TATCTTTTGT AGTCAGTTTG AACCTGTAGT GGTTATTAAT AAATAAAATC TACTGTGGTT
CTGTCTTTGT TATCAGATGG CCACAAATCG GGATGGCAAT CTGTGCCAAC ACATGACCCT CAAGTTCAAG ATGCAGCAAA
TCATGCAATC AAGACAATCC AGCAAAGGTC TAATTCATTA GTACCCTATG TGCTTCATGA GGTTGCTGAT GCAAAGGCTG
AGGTCAGTGC CTAGTTCTTT ATTCTTTAAA ATTTTCTCGA TTTTGCTTGC TCAACTGGTT CTAGAATCAC ATGGTTGAAT
TGGATAGCTT TGTTGATTGT CTTGACTAAG TTATGGGAGG ATTTCTGATT CTTTTTTTTT CTGGTTTCTT TGATCTAATT
ATGTTACCTG AACTTGTCTT GTTTTTGCTT ACGATAAAAC TTTTTGGTAA ATATTTGTCT AAAATACATG TCTCGTTGTT
GTTTAAAACA TGTCTAGCAA TATGCTATTA ACCGCATATT ATGTACATTG GAAGTTGTTT TTGTCTTACT TTTAAGTTAT
GGGACCAGCG TAGTGTTTAT TAGTAGCAAG TTGTGCTACT TCAGTGGTAT ATACCTGGTT AATATTTTGA AATGATTGTG
TGCTGAATGT ATTAAGTAAC AATATTTTAT CAATTCATTC AACTCTAAAA CAGCAAACAA CTGTCTTTCC CATTAGGGTG
TCTTGTATTA AATGCAAAGG TAGACAGTTT ACTATCTATA CCTCTTAAAC GGTTTGACCT ATAGTTTTCT CTGGTCTCCC
TCTAACTATT GGACTATTTT TCATCTGGTT GGTCTTCATT TGTATTCTTT TATAATAAAG AACTGTACAA GTGTGTACAC
ATTTTCACAG ACGCATCAAA TCAGTAAAGA AAGTGACAAA TTGGAGTTCT TTAATGTATT GTGTAATCTA CTGCTGCTGA
TCGAATAGAG TTATAGATAG CAATGGTAAA ATGAAATGAC AGTTTAACAT AGTTGTCTAA AATGTTAAAG ATTGAAGTTG
AAGGTACGAA GCCAACTTCT GCACTTGATA TCCTTGTGTC TGCCTCAAGG AAGAAAGGAG TTATAAAATT CCATTGTGTT
GAAATTTTGA GTTCTAGAGA GAGAGAGAGA CGATTATGTT GAAATATAGA GGGATGCATG TAACATACTT TTAAGACGCT
CCTTTCAACA TTAAAATTAT TAGGGCAAAT CTGATACTGG CTTGCACTAA ATGATCTGAG TCTCATTAGT GGTGGAGATG
ACGTGTGATT TCACCTAATT AGGCGTGAAA TCTGCTTCTT GCTACACTAG ATTACTTGAG CTCTACTCTA TTAGTGGAGT
TAACATAATA TTTTGCCTAG CATATATTAT TGAAAAGATT GTTGCTGTTT GTTAGCATTT CTTTATTCAA TATTCATCAT
ACATATCTGT TATTCCCTTC TGAAGTTCTC ATTAATATAA TATGTATGAA TTAACTATAT CTGTGAGCGG TCACTTGCAA
CATGTTCTTA CCATTACTTT ATTGCTCCCA ATGATATGCA ATTATTGATT ACACTACATT TGGAGCTTCT GTCGCGACTG
TTGAAGTGTA ATCCAGGGCA TAGTTACTGG TTTATCAAGG CTGATGGATG TGTGTAAATT TCTATGCAGG TGATTGATGA
TTTTGCCAAG TTTAATCTGC TTCTCAAAGT CAAACGGGGA GACAAGGAAG AGAAGTTCAA GGTAGAAGTA CACCAGAACA
ACGAAGGGGC ACTCCATCTA AATCAGATGG AACAAGATCA TTCCTAATTC TGATCTGAAG GGTCGCTCCT AAACTATGCT
TTTTCTTTTA ATCAGTATGG GGTGTATGAC TCTTACTATC TATGTTACCC ATAAATCATA CACTTTTTGG GTATTGTTCT
TATCTCTCTC AACAACTATA TGTTGTGCTT ACTCCTTTCT CTCTGATGTT TGTATTGGCT TTATTTGTTA TCTCTCTCAA
CAACCATGGT GTTATATCTA TACTACTGTA ATAT

>Vigan.06G030100.01
CATCTCCACA TCAAGTTGCT TAAGACTTAA GAAAAGCATT AAACACAGCA CCGAGAGTGA GAGAAGCAAC GACGCGGCGT
TCAAACTAAG CTACTAATAA ACGCATCGCA GTTATTACCC TCTGTTTGGC GCTACAAACG AAAACAAAGA AACCGACAAG
CGCTTTATTC CAGAACAAGA AGGAAACCGA ATGAGAGCAT CAACCTCTTC AATTCCCATT CCATCGTCGT CTTCGCGTTT
CTCCATCTTC TTCTTCCTTC TATTCGCGCT CCTCGCCCTT CGATCTTCAT CCGGCGACTG CTCCCACTTC CAACACCAGG
CACCGATGGC CACTGTCGGA GGCGTGCGTG ACTCCCCAGG GTCTCAGAAT AGCGTCGACA CTGAATCTCT CGCGCGATTC
GCGGTCGACG AGCACAACAA GAAGCAGAAT TCGCTTCTGG AGTTTGCTAG GGTTGTGAAG GCACAGGAAC AGGTTGTTGC
TGGTACCGTG CATCACCTTA CTCTCGAGGC TATTGAGGCT GGTGAGAAGA AGCTCTATGA AGCTAAGGTA TGGGTGAAAC
CATGGCTGAA CTTCAAAGAA CTTCAAGAGT TCAAGCCTGC CGGTGTTGCA TCACCATTTA CCTCTGCTGA CCTTGGTGTC
AAAAAGGATG GCCACAAATC GGGATGGCAA TCTGTGCCAA CACATGACCC TCAAGTTCAA GATGCAGCAA ATCATGCAAT
CAAGACAATC CAGCAAAGGT CTAATTCATT AGTACCCTAT GTGCTTCATG AGGTTGCTGA TGCAAAGGCT GAGGTGATTG
ATGATTTTGC CAAGTTTAAT CTGCTTCTCA AAGTCAAACG GGGAGACAAG GAAGAGAAGT TCAAGGTAGA AGTACACCAG
AACAACGAAG GGGCACTCCA TCTAAATCAG ATGGAACAAG ATCATTCCTA ATTCTGATCT GAAGGGTCGC TCCTAAACTA
TGCTTTTTCT TTTAATCAGT ATGGGGTGTA TGACTCTTAC TATCTATGTT ACCCATAAAT CATACACTTT TTGGGTATTG
TTCTTATCTC TCTCAACAAC TATATGTTGT GCTTACTCCT TTCTCTCTGA TGTTTGTATT GGCTTTATTT GTTATCTCTC
TCAACAACCA TGGTGTTATA TCTATACTAC TGTAATAT

>Vigan.06G030100.01
ATGAGAGCAT CAACCTCTTC AATTCCCATT CCATCGTCGT CTTCGCGTTT CTCCATCTTC TTCTTCCTTC TATTCGCGCT
CCTCGCCCTT CGATCTTCAT CCGGCGACTG CTCCCACTTC CAACACCAGG CACCGATGGC CACTGTCGGA GGCGTGCGTG
ACTCCCCAGG GTCTCAGAAT AGCGTCGACA CTGAATCTCT CGCGCGATTC GCGGTCGACG AGCACAACAA GAAGCAGAAT
TCGCTTCTGG AGTTTGCTAG GGTTGTGAAG GCACAGGAAC AGGTTGTTGC TGGTACCGTG CATCACCTTA CTCTCGAGGC
TATTGAGGCT GGTGAGAAGA AGCTCTATGA AGCTAAGGTA TGGGTGAAAC CATGGCTGAA CTTCAAAGAA CTTCAAGAGT
TCAAGCCTGC CGGTGTTGCA TCACCATTTA CCTCTGCTGA CCTTGGTGTC AAAAAGGATG GCCACAAATC GGGATGGCAA
TCTGTGCCAA CACATGACCC TCAAGTTCAA GATGCAGCAA ATCATGCAAT CAAGACAATC CAGCAAAGGT CTAATTCATT
AGTACCCTAT GTGCTTCATG AGGTTGCTGA TGCAAAGGCT GAGGTGATTG ATGATTTTGC CAAGTTTAAT CTGCTTCTCA
AAGTCAAACG GGGAGACAAG GAAGAGAAGT TCAAGGTAGA AGTACACCAG AACAACGAAG GGGCACTCCA TCTAAATCAG
ATGGAACAAG ATCATTCCTA A

>Vigan.06G030100.01
MRASTSSIPI PSSSSRFSIF FFLLFALLAL RSSSGDCSHF QHQAPMATVG GVRDSPGSQN SVDTESLARF AVDEHNKKQN
SLLEFARVVK AQEQVVAGTV HHLTLEAIEA GEKKLYEAKV WVKPWLNFKE LQEFKPAGVA SPFTSADLGV KKDGHKSGWQ
SVPTHDPQVQ DAANHAIKTI QQRSNSLVPY VLHEVADAKA EVIDDFAKFN LLLKVKRGDK EEKFKVEVHQ NNEGALHLNQ
MEQDHS*