GBrowse Details

Vigan.06G021800.01

Basic Information:
Name: Vigan.06G021800.01
Multiple alignment
Variant Information
Position: Chr06:2436199..2440587 (- strand)
Length: 4389
Functional Information:
Description: Similar to Peptidyl-prolyl cis-trans isomerase. [V7ALJ4, Phaseolus vulgaris]
GO: Biological Process: protein folding (GO:0006457)
Molecular Function: peptidyl-prolyl cis-trans isomerase activity (GO:0003755)
InterPro: Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain (IPR002130)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site (IPR020892)
Cyclophilin-type peptidyl-prolyl cis-trans isomerase (IPR024936)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:90.50,67.87,33.18,47.48,52.63,57.59,40.62,30.77
Arabidopsis thaliana homolog: AT2G38730.1
Automatic updates:
Name: NM_001249596 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP21 (GMCYP21), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Name: NM_001357108 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidyl-prolyl cis-trans isomerase GmCYP22 (GMCYP22), mRNA.
PubMed ID: 25348509 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr06:2436199..2436612 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr06:2436613..2436723 (- strand)
Length: 111
Type: CDS
Position: Chr06:2437216..2437272 (- strand)
Length: 57
Type: CDS
Position: Chr06:2437372..2437404 (- strand)
Length: 33
Type: CDS
Position: Chr06:2437828..2437920 (- strand)
Length: 93
Type: CDS
Position: Chr06:2438732..2438819 (- strand)
Length: 88
Type: CDS
Position: Chr06:2439710..2439733 (- strand)
Length: 24
Type: CDS
Position: Chr06:2440357..2440541 (- strand)
Length: 185
Type: CDS
Position: Chr06:2440542..2440587 (- strand)
Length: 46
Type: five_prime_UTR

>Vigan.06G021800.01 class=Sequence position=Chr06:2436199..2440587 (- strand)
GCGTGAGGCT CTTGGAATCG TTACGCAGTA GTTGTCTGAG GTGAAAATGG CTGCTTCGGT GGCAGGGAAC GCGACCACGA
ACACGAACGC GGGTGTGGAG TGGCACGTGC GTCCTCCAAA CCCTAAGAAC CCAATCGTCT TCTTCGATGT CACCATCGGC
AACATACCTG CTGGTCGAAT CAAGATGGAA CTCTTCGCCG ACATTGCGCC CAAAACCGCC GAGAATTTCA GGTTCGTTAC
TCCGTTCGAT TTTGTAGAGT CTCTATTGTT CCTTATTTAG AATACATGTG GTACAACCAC TGTGCTTTAT GCTTAGACTT
CTTCATTTGA ACCTTGGCTT CTGCTATCGT GCTGTGGATG AACTTTCCCG AATTAGGAAA AAAAGTTTTA ATATGTTTTA
TGTGCGAGAA AATATCTCAA GCTTTGATTT TGTTCGTTAT AAATTTTTTG TTTGTTTTTA ATTCCTCCCG ATATTTTATG
CTGATAACTA TTTCTCTGTG CCTTGACTTT ATGTGCTTCT GCTGCAACCA CTGAGGGCTA TGCTGATAAC TATTTTCTGG
GCCTTGGCTT GCTTGTTAGT TAACCTTGTT GTTAAGTTGA TGAACGAATT TCCACGAATT GGAGAAAAAA AAAGAGTTTT
TGGTTCCCGA AAATATCTCA AGTTTTGATG TTTAGTCCGT AACTACACGT GCTTGTATAG ACCCTAACAA GGGACTGAAA
CCATTTCATT TTGTTCTCTC TCCTTAAGTT TTGTTTTGGA CTTTTTTGTG GGTGTTTGTT TTGCTTTCAG ATTCTCTCTA
ATGACAGAAT CATCTCCAGA TCAATTGATG AATTTGGCTT ATGTTATTTG GCAGGCAGTT CTGCACTGGG GAGTACAGGT
AGTGAAGCAG TCTTCTCCAG TCTATCCAAC ACTTTCTTGT CATTTCCTGC TTTCAAAGTC TGAAAGTTGA ATGAGGATCA
ATGCTAGGGT GGTGTTGCTT TCTTGGCTTT CAGACTTTGT TTTCATGATT GCCATAATGG TAGTATTTCT AAGTCAAATG
TTGGTCTGGT GTGATAAGGT TGTTATCTTG TCACCTGACG GTCATGGTTT TATAGTTTGG AAATGGTTTC TCCACTTGTG
GGGAAAAAAG GGGATGGATG TTAAAGTCAT CCCAATTGTA TCCCCATACT GTTTCACTGG GATATTTTGT TTTTATAATT
TTCCATTTGG ACTCAAGATA GTTATGACGA TATGAATCTA TTACTGTCAT CCCCGTAGTA TACTCTGGTT GTTTATACTG
GTGAATTTCA ATGCAAGATT CTTAGCCTTA ATCCTAGTTG GCAGCACTTT CTTGTCGTTT CCTGCTTTCA GAGTCTTAAA
ATTGAATGAC GGCCAGTGCT AGGATGTTTA GTGTTGCTTT CTTGGCTTTC AGCCTTTGTT TTCATGATTG TCATAATGAT
GAATTGATAA TGATAGTATT TCTAAGTCAA ATGTTGCCGT GGTGCGATAG TATTTCTAAG TCAAATCTTG TGAGTGGAAG
GTCAAGGTTT TGAATTTTAG AAATGGTCTC TCCACTTGAT GGGATAAAGC TGCATACATC TATTTGTGGG GAAAGGGGAT
GATTACTGAA ATCATTATTC TACTCATAGA AGTACAATTC TGTGAGTACG GAAGGCTGAA GTCATCCCAA TTATATCCCA
AAACTCATTC AAACGGCCAG ATTGTTTACA TTTTTGGTTG GTGGGTTTAA GTTAAAGAAT ACTTCTCATG ATCTGATTTT
ATTTGCAGAA AAGCTGGACT TCCGGTTGGT TACAAGGGTT GTCAATTTCA TAGAGTGATT AAGGATTTTA TGATTCAAGC
TGGCGATTTT GTAAAGGTAC CTGGTGTGGT TTTTCTGACT TTATCTGTTA AATATGTACT ATGCCATAGC TGAGGTGTTT
ATGTCAACAT TCATGAAAAT AAAAAAAGAT GATGCCTATG CATGGTTTGA TCTTTTAGTA CAGATACGAC ATGATGCTTA
ACTTAGTTAT AACATCCATG TTTCATGCCC AACATTTTTG TGGAAACTAT CTTATAGTGA TGAATCCTTA TAGCTGAAGA
GGTTCACTGC GAAACTGCTG TAGTGGGTTA ACGCCATGAC TGCTATTTTG AAGATTTTAA ATACAAATCC ATAAAAATTT
ATACTACACA CAAAAATACT CACAATGAAA AAATAATCCA AAATTTAAGA CATTAATAAT TTGAGTAAAT TATAAATGAA
AGGCTGAGCA ACACTCCAGA ACAGAGGAAA ACAAAAGCAA GAAATTTGTG TGACAAAAAG TACTTGCATG AAAATTGAGT
TGTGCTAGGG AGTTGTTCCA AACTTCAAGG ACCAAAAGCC GACTTAGTGT ACTAAGGTTT TCTTCTAGAA TTTTCTTGTG
ATCCTTGCAA TGTCTTTTTA TTTGGAATCC TACAAAAAAA AAAACACACA ATTTACAACC TCAAAGTTCC CTTATGTAGA
TAATTAGTTA GTACCGCTGT TCATGTGTAT GCATTAATTG ATCTATCTTT GAATTTACCT GCATGCAGTT CTGCCCTCCA
TTTTAATTCG TAAGATTTGT ATGGCTTGGA TAAATTTGTC AGGAGCAACA ATAGAACTAA TCCTAGTTTT ATACAAAATC
CTTACTCTAA TAAATTCTTC CTTGCAGGGT GATGGTAGTG GATGTGTTTC AATTTATGGA CTTAAGCTTG ATGATGAAAA
CTTTATTGCC AAACACACTG GCCCCGGCCT TCTGTCGATG GTATGTATTC GTTTGTGCCT TCTGTACTGG GATGATTGCA
ATGTTCATCA ATTCCTTAAA TAGCTTCGTA ACTGGAGTAC TAATTGACAG TACTTACACA AATCTAGACG ACAGTTCCTA
ACAAGGTTAA TCTACAAAGT TTTTGCATCC TGCACACTGG AATCATACAA TGGTTATCAA TTCGTGAAAT AGCTACTTAA
CTGGAGCACT AATTGGCAGC ACTTACATAA GCAATTCTAT ATTATATTTC CGAACAGATT TACTTACAAT TGTTTTACTT
CCTGAACACT TTGAAATCAT ATTGATTTTT CTTTGCTAAC TTCAACCAAT TACGGCATCA ATTGATTCTA TATGTATGTG
TAAATTATGC TTTCGCTTGT TATAATGTAA AAAAGGATTA AGTCCAGTTT GTCTAATCTG CAGGCAAATA GTGGACCAAA
TACCAATGGT TGTCAGGTAA CTTTCCAATG GTCACCCCCT TTTTCTTTCC CTTTTCTCAG TGGCAACTTT GAATTGGTCA
TGTATTTGTA TTGATAAATC TTCTCTATCT TGCAGTTTTT TATAACATGT GCAAAATGCG ACTGGCTTGA CAACAAGCAT
GTCGTTTTCG GGGTATACTT TTCATATCTT CTGTTGCATA TATTAATTAT TCTTCAAACA GCCACCAGAA TCTGAATTTA
ATTGTTCCTC AAGTTTTATG TCTTCATGAA TTCAAATTCA GATGCCGGAT ATTTGGGTAA CAAAGATTGC AAGGTTTTAT
CAGATCTGTA AACTTAGAAT AATACCTTAA GCCTGAGATC TGAACAAACT AAATCAACTT TCAAATTTAA GTTACGCAAG
TAGAAAATGT GAAGGTTTTT TCGGCATGCA CAGATTGCTA ATTGCTTATT ATGCCAAATG TGATGGGAAA AAATAATATG
TCTCCCTTTG AGGGGAGGAC TACATGCCTT GCTCATATCG CAGTTATTGT CTAAAATGAA ATTTAACTCA AAAATTCATA
TGCACTCCTT GTCTATGTGC TTTTTTGGAA ATTTTACTGG CATCTTCCTT CTCCCAAATT TTTTAATGTG TTGTGCATTT
ACAATCTATC CTCCCTTCAT GCAGAGAGTG CTTGGAGATG GCCTTTTGGT TGTAAGGAAG ATTGAGAACG TGGCAACTGG
ACCCAATAAC CGGCCAAAAT TAGCTTGCGT CATTGCAGAA TGTGGTGAAA TGTAAATTTT AATGGAACTT CGCCAACAAA
CAATTGTCCC CCAAACAATT GGTTGAATCC TCTACACCAA CTGCACTCAC TATACAGATG TGGAATTTCT GCACTACATG
TATTTCTTTG TGCCCCCTTG AAACTAAAAA TTCTTGCCAT GGGATTTTTT AATGTAAGAC TGTATAATTA TATCAGCATA
CAGTTGAGTA GCACAGCTAA TTGAATGGTT ATGCTCGAGG ATGATAGAAT GATCTTACTT TGATGCATCT TTTAGGCCCA
TAATCATCAT ACATGTACAC GCAGTTGTAG TATGCAAGTT AATAGTGTGT TAGAAATACT TCTAGAGCTA CTTACTGGCA
CATTATTTCT AAAAGCAGGT GGAGTATAGA ATATTTATGG AGGAAAGATT TACACAATAC TTGCCTAGT

>Vigan.06G021800.01
GCGTGAGGCT CTTGGAATCG TTACGCAGTA GTTGTCTGAG GTGAAAATGG CTGCTTCGGT GGCAGGGAAC GCGACCACGA
ACACGAACGC GGGTGTGGAG TGGCACGTGC GTCCTCCAAA CCCTAAGAAC CCAATCGTCT TCTTCGATGT CACCATCGGC
AACATACCTG CTGGTCGAAT CAAGATGGAA CTCTTCGCCG ACATTGCGCC CAAAACCGCC GAGAATTTCA GGCAGTTCTG
CACTGGGGAG TACAGAAAAG CTGGACTTCC GGTTGGTTAC AAGGGTTGTC AATTTCATAG AGTGATTAAG GATTTTATGA
TTCAAGCTGG CGATTTTGTA AAGGGTGATG GTAGTGGATG TGTTTCAATT TATGGACTTA AGCTTGATGA TGAAAACTTT
ATTGCCAAAC ACACTGGCCC CGGCCTTCTG TCGATGGCAA ATAGTGGACC AAATACCAAT GGTTGTCAGT TTTTTATAAC
ATGTGCAAAA TGCGACTGGC TTGACAACAA GCATGTCGTT TTCGGGAGAG TGCTTGGAGA TGGCCTTTTG GTTGTAAGGA
AGATTGAGAA CGTGGCAACT GGACCCAATA ACCGGCCAAA ATTAGCTTGC GTCATTGCAG AATGTGGTGA AATGTAAATT
TTAATGGAAC TTCGCCAACA AACAATTGTC CCCCAAACAA TTGGTTGAAT CCTCTACACC AACTGCACTC ACTATACAGA
TGTGGAATTT CTGCACTACA TGTATTTCTT TGTGCCCCCT TGAAACTAAA AATTCTTGCC ATGGGATTTT TTAATGTAAG
ACTGTATAAT TATATCAGCA TACAGTTGAG TAGCACAGCT AATTGAATGG TTATGCTCGA GGATGATAGA ATGATCTTAC
TTTGATGCAT CTTTTAGGCC CATAATCATC ATACATGTAC ACGCAGTTGT AGTATGCAAG TTAATAGTGT GTTAGAAATA
CTTCTAGAGC TACTTACTGG CACATTATTT CTAAAAGCAG GTGGAGTATA GAATATTTAT GGAGGAAAGA TTTACACAAT
ACTTGCCTAG T

>Vigan.06G021800.01
ATGGCTGCTT CGGTGGCAGG GAACGCGACC ACGAACACGA ACGCGGGTGT GGAGTGGCAC GTGCGTCCTC CAAACCCTAA
GAACCCAATC GTCTTCTTCG ATGTCACCAT CGGCAACATA CCTGCTGGTC GAATCAAGAT GGAACTCTTC GCCGACATTG
CGCCCAAAAC CGCCGAGAAT TTCAGGCAGT TCTGCACTGG GGAGTACAGA AAAGCTGGAC TTCCGGTTGG TTACAAGGGT
TGTCAATTTC ATAGAGTGAT TAAGGATTTT ATGATTCAAG CTGGCGATTT TGTAAAGGGT GATGGTAGTG GATGTGTTTC
AATTTATGGA CTTAAGCTTG ATGATGAAAA CTTTATTGCC AAACACACTG GCCCCGGCCT TCTGTCGATG GCAAATAGTG
GACCAAATAC CAATGGTTGT CAGTTTTTTA TAACATGTGC AAAATGCGAC TGGCTTGACA ACAAGCATGT CGTTTTCGGG
AGAGTGCTTG GAGATGGCCT TTTGGTTGTA AGGAAGATTG AGAACGTGGC AACTGGACCC AATAACCGGC CAAAATTAGC
TTGCGTCATT GCAGAATGTG GTGAAATGTA A

>Vigan.06G021800.01
MAASVAGNAT TNTNAGVEWH VRPPNPKNPI VFFDVTIGNI PAGRIKMELF ADIAPKTAEN FRQFCTGEYR KAGLPVGYKG
CQFHRVIKDF MIQAGDFVKG DGSGCVSIYG LKLDDENFIA KHTGPGLLSM ANSGPNTNGC QFFITCAKCD WLDNKHVVFG
RVLGDGLLVV RKIENVATGP NNRPKLACVI AECGEM*