GBrowse Details

Vigan.05G265100.01

Basic Information:
Name: Vigan.05G265100.01
Multiple alignment
Variant Information
Position: Chr05:34360391..34363281 (+ strand)
Length: 2891
Functional Information:
Description: Similar to Thioredoxin superfamily protein isoform 1. [XP_007014394.1, Theobroma cacao]
InterPro: Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.53,7.74,6.04,4.86,11.64,6.03,10.87,4.92
Arabidopsis thaliana homolog: AT5G57230.1
Automatic updates:
Name: NM_001251738 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305658 (LOC100305658), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:34360391..34360804 (+ strand)
Length: 414
Type: five_prime_UTR
Position: Chr05:34360805..34360860 (+ strand)
Length: 56
Type: CDS
Position: Chr05:34361613..34361732 (+ strand)
Length: 120
Type: CDS
Position: Chr05:34361861..34361939 (+ strand)
Length: 79
Type: CDS
Position: Chr05:34362211..34362297 (+ strand)
Length: 87
Type: CDS
Position: Chr05:34362509..34362571 (+ strand)
Length: 63
Type: CDS
Position: Chr05:34362844..34362921 (+ strand)
Length: 78
Type: CDS
Position: Chr05:34362922..34363281 (+ strand)
Length: 360
Type: three_prime_UTR

>Vigan.05G265100.01 class=Sequence position=Chr05:34360391..34363281 (+ strand)
AACATAAAAC AAAAATATAC AAAAACTAAA AGCACCATAT TTTCATCAGG AATTCTATAG TCCAATTCCC TGTTTTGGGT
GGTGGAAAAG TGACGCCAAG TGGGTATAAG AATTTTAATT TCAAATTAAC TCCGAAAATT ATTCATTTAA CTCATGTTTC
TGTATTTCAC TTTGTTTTCT TTCCTTACGC TTTCTTAAAT CTGAGTTTCA CACACTACGT GGAATGCTCT TTAGGTGTTC
GATAAAATGC TTCAACCGAA TCTTTGTAAA TAAGGAGTTG TGGGGATAGT AGAAATTAAA CAAGAAAAGT TTTAGTGAGG
TTGATAGTGC ATTTTCACGA TTTTTGTAGT CTGTCTGTAA CATGTATTTA TTTGCAGGAA CTGGATAGTT TAGCCCCGTT
GCATTCACCG TGTAATGGAC GATCCATCGT TTTTTGATCG GATGATCAGT CATCTCCGTT CAACTTGCAA GTATGAATTC
GTTCATGTGA TCCTTAATTG CTTTTCTTAA CTTGCTGTAT ATGACAGATT TTTGTTAAGC ATATTTATAG TGAGCGTGAT
TATAGTAATT TGATTCGTAA ATGTTTCAAG AATAAGATAC ACTTTTGTTC TCTCAACATA TCTTGAAATA ATGTTTTATT
ATCTTAAGAA TATAATATTA TCATCTTCGG GAACATGGGG GAGGCTTTGC ACACTCATGC TATTAAGCTG CTTGATATGT
TGTGCATATT TGACTAGAAA AAAATTTCGG GTAGGAGAAT TATATAGGTC TATTCGGGTT TTTTGAGAGT GGATGACTCT
GTTTTAATTT CTTTATGGTG TCATCTTTAT GTTCTGCCAA AAGAGCACTC ATTGTGCTAT GACTGAGTCA TTTAATAATT
TCTGTTGGCC TATTGAAAAC TTCTTTTCCT CTCTATATTT TATCTTCATC AAGTACTTGT AGTCCTGGAT TGGTATATAT
ATTGAGATAC CAAAAGAATA TATTTAATTC TTTTTCCAAT CATGTCAAAA AGTGTTTGGA AGCTAATTTC AAATCTTCAT
ATATTACTAA TGAAGTTCGG TAGGGATTGA CTATGGTACG GTAGTTTCCA TAAACTCCAT AAATAGTTGT GTTGTTATGG
CGCACTTTCG TAATGCCTTT TTCATGGGAT AGTTTTGCCT AATCTGATTC TCTTTCTACT ATAAGATGAT AATATTTTTT
GGAATTTTTG TGATAACTAA AGGTACTATA CTGGTTATCC AAAGGATCTT GGACCATCCA AGGTTATTCA TTTTACATCT
GAGCGTGAGT TTGTCACACT TCTTCATGAA GGTTTTCCTG TGGTTGTTGC ATTTACTATC AGGTAATCTG GAGTCAGCTG
CTGAATTCTT ACTCGGTTCC CCCTATTTGA ACTTGACTTT GGTTTTAATG GAAAGGAAAA GTGAAGAGAT TTAATAATAA
CTAATAACTA CTACTTATTT GATAATGCAG GGGGAATTAC ACTCGACATC TTGACAAAGT ATTGGAAGAA GCTGCTGTTG
AGTTTTATCC TCATGTAAAA TTTATGCGTG TAAGTTATTT TTCATAATTA ATGTGCTCGT GCAACTGTTG GCAACCATAT
CAATAGCATC TCTCTGATGC AGCATAGCTC CTGTCTCACA GAATTACAAA AACACAAACA CATATACTCA CACAGCACAG
TTCATCGCGA CAGTTTTCCT TTCTTTTTAT TTTATTGCGT GATTATTATT ATTTTCTTGG GTTTGGGCTA TGTATTTTCT
GTGCACTCTG TATCATGTTA TTGTGCATTG GTGAAATGGT TTTGTTCTGG AGCTTTGCAG GTTGAATGTC CGAAATATCC
TGGGTTTTGT ATAACTCGGC AAAAGAAGGA GTATCCATTC ATTGAAATAT TTCACAGTCC AACACAGGTA TGGTGTTCCT
TACCTGTTCA TCACTGTCTC ATCAATTCAT TGCATAAACT TCCTTCGGGA AAAGTCATAT AAGATTTTCT TTTAACGGAA
TGGTTGATCA GAAAGCACGT ATTCTGCAGT ATGGTTTCTA TTAATCGGTT AATCTGTTCA TTGACTACCA CCCCATGTAA
ATCCTTTTGT AATTTGAGAC ATGTGTTCCT CTATACAGGC AGATAAACAG GGAAGGGTGG CTGATCCGAA TATTACTAAG
TACAGTGTTA AAGTCTTGCC TGTAAGTTGT TTTTGTTTAA ATTAAGTCTG GATTGCACCT TGAGAATCCT TTTTCAGGCT
AACTGATACC TATCACTGAT TATTATTATT ATTTTGAATT TTTAACTCTT CTCAAACGTA TGTTTATAGT GAGTTATACA
TAGGTAGTAA GTCTAGTAAT CTACCAGTAA GTCACTAAGT TATCAAAATT TTGTACATGC CTGACATACA CTCACTTGCA
TCTGTGAGAT GTAATATTTT ATCCAATTTC AATTTAATTT TATGCACTTG CAGTTCAACT ACGATTTAAG CGCTTATGGA
TTTAGAGAAT TCTTCAAGCG ACACGGTATG TGGTCATCAG ATTCAAAGTA AGTTCCAGCG GAAGGGTTTT ATGTTTCATA
TGTTGAAGAG CCACCTGATC ATACTCTCTA CCTATCATCA CAAGTTCACA ACTAATGGAA AATATTATTT GGTTTAAGTT
CTCGTCAGGG GCTTTATTCA TTGTTCCTTT GTGTTGGCAT CTTAGTATTT CCATGTTTAT GTTCTCCAAC TTCTAGAATA
GAACCTACAA GACGTTTCTC ATCAAACCCT ATCTGTTAAT TTGTCTATCA ACTACTTGAA TCCTAGAGGC TTCTTTGGAA
AGCAAGATAA ACTGCTTGTC TTAAAAGTTG GATATGCGAT ATATTCTTTT GTGTTCTATA AATTGAGTGA GAAATTATTG
CAATGGTGAT A

>Vigan.05G265100.01
AACATAAAAC AAAAATATAC AAAAACTAAA AGCACCATAT TTTCATCAGG AATTCTATAG TCCAATTCCC TGTTTTGGGT
GGTGGAAAAG TGACGCCAAG TGGGTATAAG AATTTTAATT TCAAATTAAC TCCGAAAATT ATTCATTTAA CTCATGTTTC
TGTATTTCAC TTTGTTTTCT TTCCTTACGC TTTCTTAAAT CTGAGTTTCA CACACTACGT GGAATGCTCT TTAGGTGTTC
GATAAAATGC TTCAACCGAA TCTTTGTAAA TAAGGAGTTG TGGGGATAGT AGAAATTAAA CAAGAAAAGT TTTAGTGAGG
TTGATAGTGC ATTTTCACGA TTTTTGTAGT CTGTCTGTAA CATGTATTTA TTTGCAGGAA CTGGATAGTT TAGCCCCGTT
GCATTCACCG TGTAATGGAC GATCCATCGT TTTTTGATCG GATGATCAGT CATCTCCGTT CAACTTGCAA GTACTATACT
GGTTATCCAA AGGATCTTGG ACCATCCAAG GTTATTCATT TTACATCTGA GCGTGAGTTT GTCACACTTC TTCATGAAGG
TTTTCCTGTG GTTGTTGCAT TTACTATCAG GGGGAATTAC ACTCGACATC TTGACAAAGT ATTGGAAGAA GCTGCTGTTG
AGTTTTATCC TCATGTAAAA TTTATGCGTG TTGAATGTCC GAAATATCCT GGGTTTTGTA TAACTCGGCA AAAGAAGGAG
TATCCATTCA TTGAAATATT TCACAGTCCA ACACAGGCAG ATAAACAGGG AAGGGTGGCT GATCCGAATA TTACTAAGTA
CAGTGTTAAA GTCTTGCCTT TCAACTACGA TTTAAGCGCT TATGGATTTA GAGAATTCTT CAAGCGACAC GGTATGTGGT
CATCAGATTC AAAGTAAGTT CCAGCGGAAG GGTTTTATGT TTCATATGTT GAAGAGCCAC CTGATCATAC TCTCTACCTA
TCATCACAAG TTCACAACTA ATGGAAAATA TTATTTGGTT TAAGTTCTCG TCAGGGGCTT TATTCATTGT TCCTTTGTGT
TGGCATCTTA GTATTTCCAT GTTTATGTTC TCCAACTTCT AGAATAGAAC CTACAAGACG TTTCTCATCA AACCCTATCT
GTTAATTTGT CTATCAACTA CTTGAATCCT AGAGGCTTCT TTGGAAAGCA AGATAAACTG CTTGTCTTAA AAGTTGGATA
TGCGATATAT TCTTTTGTGT TCTATAAATT GAGTGAGAAA TTATTGCAAT GGTGATA

>Vigan.05G265100.01
ATGGACGATC CATCGTTTTT TGATCGGATG ATCAGTCATC TCCGTTCAAC TTGCAAGTAC TATACTGGTT ATCCAAAGGA
TCTTGGACCA TCCAAGGTTA TTCATTTTAC ATCTGAGCGT GAGTTTGTCA CACTTCTTCA TGAAGGTTTT CCTGTGGTTG
TTGCATTTAC TATCAGGGGG AATTACACTC GACATCTTGA CAAAGTATTG GAAGAAGCTG CTGTTGAGTT TTATCCTCAT
GTAAAATTTA TGCGTGTTGA ATGTCCGAAA TATCCTGGGT TTTGTATAAC TCGGCAAAAG AAGGAGTATC CATTCATTGA
AATATTTCAC AGTCCAACAC AGGCAGATAA ACAGGGAAGG GTGGCTGATC CGAATATTAC TAAGTACAGT GTTAAAGTCT
TGCCTTTCAA CTACGATTTA AGCGCTTATG GATTTAGAGA ATTCTTCAAG CGACACGGTA TGTGGTCATC AGATTCAAAG
TAA

>Vigan.05G265100.01
MDDPSFFDRM ISHLRSTCKY YTGYPKDLGP SKVIHFTSER EFVTLLHEGF PVVVAFTIRG NYTRHLDKVL EEAAVEFYPH
VKFMRVECPK YPGFCITRQK KEYPFIEIFH SPTQADKQGR VADPNITKYS VKVLPFNYDL SAYGFREFFK RHGMWSSDSK
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