GBrowse Details

Vigan.05G254400.01

Basic Information:
Name: Vigan.05G254400.01
Multiple alignment
Variant Information
Position: Chr05:32234869..32238099 (+ strand)
Length: 3231
Functional Information:
Description: Similar to Pollen Ole e 1 allergen and extensin family protein. [XP_007020913.1, Theobroma cacao]
InterPro: Pollen Ole e 1 allergen/extensin (IPR006041)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:75.74,67.11,27.63,30.16,34.97,109.26,63.68,44.99
Arabidopsis thaliana homolog: AT5G54855.1
Automatic updates:
Name: KM397724 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM397734 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM397742 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris pollen Ole e 1 allergen and extensin family protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: NM_001248520 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527393 (LOC100527393), mRNA.
PubMed ID: 28294342 NCBI(pubmed)
25249442 NCBI(pubmed)
Status: Known Variant
Name: NM_001250485 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305581 (LOC100305581), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:32234869..32235048 (+ strand)
Length: 180
Type: five_prime_UTR
Position: Chr05:32235049..32235193 (+ strand)
Length: 145
Type: CDS
Position: Chr05:32237407..32237690 (+ strand)
Length: 284
Type: CDS
Position: Chr05:32237691..32238099 (+ strand)
Length: 409
Type: three_prime_UTR

>Vigan.05G254400.01 class=Sequence position=Chr05:32234869..32238099 (+ strand)
ATTTTACATA ATGACAATTT AGTCCCTACT CGGGCGTTGG ACTTATTCAT TCAGTATTTC AACTATTGTG TCGGTGGAAA
TATCAATGCA GTGTTCGAGT TGAAAGAAAA CTACCCGTAA ACCCAAAGGC ATTTCTCCGA GAAAGGTGTC ATTTTTTTGC
TGTTTCTCTC TATCTCAATC ATGGAAAAAC AGAAGACGGT GATGGGTTTG ATTCTTTTGC TTTTTGTTTC GGGTGTGAGT
GCTTGGACTG GTGAAATTCA CGGAAGAGTT GTTTGTGATG TTTGTGGAGA TTCTTCTCTT GGACCTGAAG ATCATGTGGT
TGAAGGTTTT CCTCTCACTC TCTCTCTTCA ATATGCGTCT CGTTTCAATT TTTGTCGTTT TTATTGAGTT TCTGGAATGA
TGTATTCCTT TTTTGATGAA AATTGTTTGC TTTTTGCTGT TGTAAATAAG CCATATCACT CTCCACCGAT TGTTTAACTG
GGTTGAAATT TTGACTTGTG TGTGTTATCA GTGGTGTGGT TAGTTGTTAG CGTTGTAACA GTTTACCCCT TCAAATTGTT
TGACCCTGTG GAGTAAAATT GTCATACGGC AAAAGAATAC CAAGGTTTTA AATTGCGGTA GCAGTTGCAG TTTTGTTGTG
ATCTTTGATT TTGTAGGAAA TTTCGGATAT ATATAGTTAC AATTGCAGTA GCGGCTGACC CAACAACCTT ATAGTTGCAG
TCAAAATTTT GGTTGCGGAT ACTGTATTGT GTAGTCACTG TTGGCCAGTT TGACATGGTG GCATATGAGA TGGAACAAGG
AAGATGTTTC TAGAAGTTGT TTATTCACAT TTGAGGATGA TGATTGATGA ATTGTTTGTT TGTATATTTT TATTAATTAA
CAGAAGGACA ATGAGATGGG CTTATTGGTT TGATCAAAGG ATTTGTAGAT ATTCATAAGA ATGCATTACC TGATAAACCT
CCTGTGGGAG TGAAATTATT TTTCTTTTCT TCAATCCCAA GTAGAATTTG ATACCTGGAA TGTTTGTTTT CCTGATCCAG
TCGGATATAT TGATCTTTGA ATGATGGTGT GACTAATTGA AAAAAGATGT TTCATAATAG TCTCTTCATC CTTCTCAATT
TGCAGTTCCA ATTTTTTTGA AGTTTATTTG TATCAATGAC TGCTAATGTC TAATCATTTT GACGATTTCT AACTTTTCTT
TCTTACCCTT TCATCTTTTA AAGATAACCA TTTCATGTAT TGTATTAGTT GATTTATGTT TGTGGATATG TTGTATTGTG
AATGATGATA TGACTAAATG AAAAAAGATG TTCATTGAGT CTCTTCATCC TGCTCACTTT GCATTTCCAT TTCTTGAAGT
TTATTTTGTA TCAATGACTG TTACTGTCTA ATCATTGTGA TGATTTCTAA TTTTTCTTTC TTACGCTTTT CTCTCTTTCA
GAAAACTGTT TCATGTATTG TGTTAGTTGA TTTATGCTTG TGGATATGTT TTATGTTCAA AGCTCCTTAA CTGGATAATG
ATATATCATT GTTTATGTTA TGACCACCTC CCTTTATTAG GTTGCTATCA ACGTGTCTCA AACTAAAGCT CAAAAAATCA
ATTGAACATC TCTTTGCCAT ACATTTTCTA CGAGAACCAT ATTTTACTCC TTAACATTTT CGTTCACATC CTTGCAACAC
AAACAAGGAA GGACTAAAGT AGTTTCAAGT GTTATTTAAA AGATTTTGGT TAAGAGAGAT AAAAGAGATG GTGGGTGTTC
GACTAAATTC CTAGAGTCCT AGCTAGTGCC TCCATGACAG AATTAGTCTT GCTGTTCTGG GAGAAATTTG TACAGTAATG
AAGACCAAAC TCGTAGGAAT AAACTCCTAG CTGTCTCTTA AACTCGTTCT CTCAAAGGGT TCAATACTTG TCGGGGTGAA
AACCTGTCCA TTGACTGATA GTTCTCATTT TCAAAAGTTT GATGATCCGA AATTCCTTAG TTTTATCCTG AAGATCCTTT
TGTATGCCAC TGATGTATAA TGGTAGTTCG TCCAATAAAC TTATGACAAC ATTTGATGTT GGTTCTGTGC AACCTAATTA
ATGTTGTCTC TATAAGAAAC AAGCCTTCTT TCTTATACTT CTGTATCTGG TTTTTTATGT AATCCCATTT TCAGATTTAA
CCATTTTGGT GATGATTCAA AGTTTCAACT TTCGTATCAT TCCATTCTTT CGGGTGGTAG TTTAATTTCG AAATTTAGCA
ATCATACAAA AACCTCAAAA AAGGAGACTT CACTGGTCAT CTTGCCATCC TCTACAATTA CTTTGAAGCT GAAGTACATA
TATGCATATT CCTCCCATTA CTTGGAATCT TATAGGTTCA TGTTCTATTT CCCTTTATGG GTGTTCTTTT CACCATTTTG
CTGGTGCAAT TTAAAATCTT GCTGCTCACA AATCAGAATG CAATTTCCAC ATATCAATTT GAACTTATTC TAACGTACTA
TCAGACTATT ATCTCCTTTT CTTAACAAAA GGTAATTGAC TTTAGTGCTC TAATGTAGGT GCTGAGGTTG CTGTTCTTTG
CATCACCAGG TCTGGAGAAG TTCTAAACTA TCAGGCATTC ACAGATGCAA AGGGGATATA CACAGTGGCC GAGACAATGC
CGGAGAGTGA TCGTTGGGAC GCATGTCTAG CTCGACCAAT CAGTAGTTTC CATGAACAGT GCACTCAACT TGGTGAGGGC
AGCTTGGGAG TCAAATTCAG TTACAATCAC CCATCAGGAT ATTCACACAA TGTCAGGACC TTTGTGTATC GACCCACCAG
TGTTCCAACT TACTGCATAT GATATATATG GTCTTGCTCC GAATCTGTGA GTGCTTATGC TTTGGTTGAA CTAGTTCAAA
ACTAATGAGC ATATGAACAT ATTCTCTTTA TACTATACAT GTAGGTGAAG TGGTGTTCCA GGTATGTGTT TCTTTAGAAA
CTAGACATAG TAAGCTTGAG ACGTTTGAGT AATTGTAAAT GATAATATTA TAGAGAGCAA AGCAAAATCA TAGTAAATGG
CACTGTCATT GAACAGTGCA ATGAATCTCA TGGCTTAAAT GCATTATTAT ACTTTAACTA CCAAAGTTTC ACAAAGTTGA
TATAACTGGT TTGTGTAAAC ATGATGAAAA GACAAGGGTT TGGATCCCTT CACTTTACGT ATGAAGAAGA TTTTGTTGAA
TGTGGTAAAA TTCCTCTATT TCATATGAGA A

>Vigan.05G254400.01
ATTTTACATA ATGACAATTT AGTCCCTACT CGGGCGTTGG ACTTATTCAT TCAGTATTTC AACTATTGTG TCGGTGGAAA
TATCAATGCA GTGTTCGAGT TGAAAGAAAA CTACCCGTAA ACCCAAAGGC ATTTCTCCGA GAAAGGTGTC ATTTTTTTGC
TGTTTCTCTC TATCTCAATC ATGGAAAAAC AGAAGACGGT GATGGGTTTG ATTCTTTTGC TTTTTGTTTC GGGTGTGAGT
GCTTGGACTG GTGAAATTCA CGGAAGAGTT GTTTGTGATG TTTGTGGAGA TTCTTCTCTT GGACCTGAAG ATCATGTGGT
TGAAGGTGCT GAGGTTGCTG TTCTTTGCAT CACCAGGTCT GGAGAAGTTC TAAACTATCA GGCATTCACA GATGCAAAGG
GGATATACAC AGTGGCCGAG ACAATGCCGG AGAGTGATCG TTGGGACGCA TGTCTAGCTC GACCAATCAG TAGTTTCCAT
GAACAGTGCA CTCAACTTGG TGAGGGCAGC TTGGGAGTCA AATTCAGTTA CAATCACCCA TCAGGATATT CACACAATGT
CAGGACCTTT GTGTATCGAC CCACCAGTGT TCCAACTTAC TGCATATGAT ATATATGGTC TTGCTCCGAA TCTGTGAGTG
CTTATGCTTT GGTTGAACTA GTTCAAAACT AATGAGCATA TGAACATATT CTCTTTATAC TATACATGTA GGTGAAGTGG
TGTTCCAGGT ATGTGTTTCT TTAGAAACTA GACATAGTAA GCTTGAGACG TTTGAGTAAT TGTAAATGAT AATATTATAG
AGAGCAAAGC AAAATCATAG TAAATGGCAC TGTCATTGAA CAGTGCAATG AATCTCATGG CTTAAATGCA TTATTATACT
TTAACTACCA AAGTTTCACA AAGTTGATAT AACTGGTTTG TGTAAACATG ATGAAAAGAC AAGGGTTTGG ATCCCTTCAC
TTTACGTATG AAGAAGATTT TGTTGAATGT GGTAAAATTC CTCTATTTCA TATGAGAA

>Vigan.05G254400.01
ATGGAAAAAC AGAAGACGGT GATGGGTTTG ATTCTTTTGC TTTTTGTTTC GGGTGTGAGT GCTTGGACTG GTGAAATTCA
CGGAAGAGTT GTTTGTGATG TTTGTGGAGA TTCTTCTCTT GGACCTGAAG ATCATGTGGT TGAAGGTGCT GAGGTTGCTG
TTCTTTGCAT CACCAGGTCT GGAGAAGTTC TAAACTATCA GGCATTCACA GATGCAAAGG GGATATACAC AGTGGCCGAG
ACAATGCCGG AGAGTGATCG TTGGGACGCA TGTCTAGCTC GACCAATCAG TAGTTTCCAT GAACAGTGCA CTCAACTTGG
TGAGGGCAGC TTGGGAGTCA AATTCAGTTA CAATCACCCA TCAGGATATT CACACAATGT CAGGACCTTT GTGTATCGAC
CCACCAGTGT TCCAACTTAC TGCATATGA

>Vigan.05G254400.01
MEKQKTVMGL ILLLFVSGVS AWTGEIHGRV VCDVCGDSSL GPEDHVVEGA EVAVLCITRS GEVLNYQAFT DAKGIYTVAE
TMPESDRWDA CLARPISSFH EQCTQLGEGS LGVKFSYNHP SGYSHNVRTF VYRPTSVPTY CI*