GBrowse Details

Vigan.05G248500.01

Basic Information:
Name: Vigan.05G248500.01
Multiple alignment
Variant Information
Position: Chr05:30894487..30897793 (+ strand)
Length: 3307
Functional Information:
Description: Similar to Uncharacterized protein. [I1KY01, Glycine max]
GO: Cellular Component: integral to membrane (GO:0016021)
InterPro: Cytochrome b561, eukaryote (IPR004877)
Cytochrome b561/ferric reductase transmembrane (IPR006593)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.33,3.30,0.51,3.55,5.05,0.74,6.77
Automatic updates:
Name: NM_001255791 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytochrome b561 domain-containing protein (LOC100816591), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:30894487..30895045 (+ strand)
Length: 559
Type: five_prime_UTR
Position: Chr05:30895046..30895186 (+ strand)
Length: 141
Type: CDS
Position: Chr05:30895360..30895521 (+ strand)
Length: 162
Type: CDS
Position: Chr05:30896458..30896606 (+ strand)
Length: 149
Type: CDS
Position: Chr05:30897027..30897327 (+ strand)
Length: 301
Type: CDS
Position: Chr05:30897328..30897793 (+ strand)
Length: 466
Type: three_prime_UTR

>Vigan.05G248500.01 class=Sequence position=Chr05:30894487..30897793 (+ strand)
GTCTCTCAGT ATATACATGT ATAAATTTTA ACCCCTCACA TTGAAATCTG ACAAACTTTA GCTCTGCAAG TCCACATTCT
CAAAAAGCCT GTCCAAGTGA ACCCCACAAG TTTGAAATCT CATTTAATGC CTCATTTCAA GTTCCATTTA TTATTTACAA
GATCTTCCGA ACTTAGTACA AACAATCAAT TTTTCCATGC AACAACCTTA AGAAAATGTG AGTTTAATCT GAAAGGAAAT
GTATACTTAA AAGGAAGGTT AAAGTTTAAA CTCCTTCTCT TCTGATGAGC TTTATCTGAC CTCATGTTGA TCTCACATTT
TTCCTGCATT GGTTGCAACT TTTTTAGTTC TACTGTCTAG ATAAGACTGC TCTCTGCTCA GAATCCTATC TCACATACAC
ATAGCAGAAG ACACTTCAAA AAAAGAGAGG ATAAGCTCTT TCAGTTCATG GGAAATCACA TTCAGTTTTT GCTTAGAATG
TTATAGTTCT TTCGCTTCCT TTTATCTTCT GGAATTGGAG ACTGAGATTG AGATTGAGTT TGAGTTTGCA CTTGGAAGAA
TGGGAGTTCA GCAAAAGCTC ATTTCTTTCT TCTTTCATGC TTCTCTTGTA TTCATCATGT TTCCCCTTGT TGGTTCATCC
CAAGAGCACC AGAAAATTAC AAGCAGCCCT TCAAGAACCA AAGATAATAA CCACATTCAG GTAGGGTATT TCATCAAATT
CCATATTCTG AAATTTTATT CAAGAAAGTT AGCAGCATAA TCTGTTCATT TTTCCCCCTT GCCTAATTTC CAATCTTGCA
AGTTAAATCC CTTGTTTATT AAATGTGAGT TCTGTCTCTG AAGCTAACTC TTTTTCTTCT GTGATTGGTT AAGATGAGTC
CAAGACTTCA GTTTGAGATT ACACTACATG GCTTTCTCCT GTGGGCTTCA ATGGGGTTCT TGATGCCTGT AGGTATACTT
GCAATTAGAT TATCAAACAA AGAGGAGAAT TCAAGAAGGC ATAGAATTGT GTTCTATGTT CATTCAATTT TACAGGCAAG
TATATCTAAG TCCACATTAC ATCACAACTC CAAATCAAAT GTAATAATTG ATTGTTTCTA CTGTAAGTTC TCTTACTTTA
ACTTGAAAAC CAATGATCTA CAAAATCACA GAACAAGAAT TTACGCTAGT GAGAAAATAA GTGTTGTGGA AATGGCCAAA
ATAGTTGTAA ACAGTATTTT CAAGATGGTC TATGTGCTTG TTGTAATAGT ATTTTCAAAA TGATCAATCT ACTTTTATCT
TCACCTTGCT CAATTGAATG CATAATTAGT ACTGTTAGTG CATGTCTATT TGAGTTGAAG GGGATATATA AATGAATTCA
AAACTTGTTT GCCCTTTTTA ACCTCTAACT TTAAATCCAA TTCATACTTA AAAGTAAAGC ATTTTGGCTA TTAGTGAATG
AATAAATTAG AGTGACTAAT GTGTTAGATT AGAATACAAC AAATCATTTG GAAAGCCTCT GGATCTGTTA ATGGCCATAT
ATTAGTTTCA TAAGGTTAGT TGTAGCACTG ATTTACTTTT AATGATGATG AAGTGAAGCT AAAAGTAGAA AGATTCAGAA
TTTTAGTTAA TTTTTTAGCC TAAAGCTTGT TAGTTGCTAA TGAGATTATG CATTGGTGAT TACCTCCTAG TTTATTGAAA
AAGGACTATT ATGGATACTT TGAGGACAAG AAAGGCATTT TATTAAATAA CCTTTTATGT TTTGGAGACT CCAAGCTTTG
TTCATCTCAT TAGTGAAACA CAGGCTGTGA AGAAAACAAC AAAATTATGC TTATGGGCCT TCTTGATACT ACCAAGTCAT
AGCTATGATG AAGGGCAGAA GTTAATATAG ACCATCATTA ACAGAAATAA CTAACTTGTC TAAAGTATTT TTTTCACGGA
TGTCATTTTC CTTTTTAACA TGATATATAC TTTTGAATTT CTATTCAGCA GATGATTGCG GTGCTGCTTG CCACAGTTGG
AGCAATCATG TCCATAAAAA ATTTCAACAA CCACTTCAAC AATAGTCATC AAAGATTAGG AGTTGCACTA TATGGCATTA
TCTGGCTCCA AGTTTTACTT GGTCTTTTTC GACCACAAAG GTAAAACAAC TAAATTCACT TTCATTGAGA ATTTGTGTAT
CTATGCGCAT GATTTTGTTG GTTAGGAAGT TTTATCCTTC GTTGACCTGA GAAAATATGT TTTAGGTTAC TCATGTTTTA
GTCAAAATTG GTTTGTCACT ACATTTTAAA ATTGGTAGTT TTGGTCTTTT GTATATTTTG AAATTTGATC AATTTAATCC
CTAACGACAA AGTTTAAAAT CCACCAAAAC ATGAAAGGAC TAAAACTAAA ATTTGAGAGA AATAATGCAA CATAATTCTT
CCTTTAAATG CCTTAAAAAA CAAGTACTCA ACCTTACAAA ACCAATGAAA AGTTAAAGTA ATTAGACCTT TTATCCTCTG
TTTATTAGCA TTGTTAATAG AACATGATGA ATATGATATT ATTGTTGTTG TTCTTAACAG AGGATCCAAA AGAAGTGTTT
GGTTCTTTGC ACACTGGATA CTTGGAACTG CAGTCACATT CCTGGGTGTC CTGAATGTAT ATCTTGGATT AGAAGCCTAC
CACCAAAAAA CATCAAAAGG CATAAAAATT TGGAAAATAC TTTTCACTGT TGAGATAACT TTGGTTGTGT TTTTCTACCT
TTTTCAAGAA AAATGGGTCT ATATACAAAA TCAAGGAGTG GTTTTGGGCA ATGAAATGAT GACTTCTATT TGTCAAGAAA
TTGGACCTAA TGAAAAGGAT GAGAAGGTAT TGAACACCTG ATGAGGAAGA AGAATCAATG CATCACCATA ATTGACCCTG
ACTTCTACGT AGAATACAAG TGTTTAAAGC ATATAGAGTA CTGGTGAATT TGAATTCAAA GATTGTAAAT TACTTGGCTT
ATATGATTTC TATGTCTGGC TAAGATGCAA TTTCAAGAAC ACAGAATATC ATTTCATGGA GAACAAATAT ATTCATAATT
GATTTTTACC TCTGGTCCAT AAGGGGCAAT TGCTTCCTGC ACCCTGTAAT TGTTAGAATA TCCATATTAT CCATATGATG
TACTTGTGTT GGTTGTTGAT GGTTGGTGGG GTTTTTTTGT TGGTGATGGT GTTCGTGATT GGTAGTGGTC GCCGGAGGTA
GTGAGCTATT TTCATGTTTT TTAATAAATT TATGAGCAAT CCAAAATATA TTTATAGACT TCAAAATATC TTTTTGGACT
GTATAATTCC AAATTTATTA AGAAATA

>Vigan.05G248500.01
GTCTCTCAGT ATATACATGT ATAAATTTTA ACCCCTCACA TTGAAATCTG ACAAACTTTA GCTCTGCAAG TCCACATTCT
CAAAAAGCCT GTCCAAGTGA ACCCCACAAG TTTGAAATCT CATTTAATGC CTCATTTCAA GTTCCATTTA TTATTTACAA
GATCTTCCGA ACTTAGTACA AACAATCAAT TTTTCCATGC AACAACCTTA AGAAAATGTG AGTTTAATCT GAAAGGAAAT
GTATACTTAA AAGGAAGGTT AAAGTTTAAA CTCCTTCTCT TCTGATGAGC TTTATCTGAC CTCATGTTGA TCTCACATTT
TTCCTGCATT GGTTGCAACT TTTTTAGTTC TACTGTCTAG ATAAGACTGC TCTCTGCTCA GAATCCTATC TCACATACAC
ATAGCAGAAG ACACTTCAAA AAAAGAGAGG ATAAGCTCTT TCAGTTCATG GGAAATCACA TTCAGTTTTT GCTTAGAATG
TTATAGTTCT TTCGCTTCCT TTTATCTTCT GGAATTGGAG ACTGAGATTG AGATTGAGTT TGAGTTTGCA CTTGGAAGAA
TGGGAGTTCA GCAAAAGCTC ATTTCTTTCT TCTTTCATGC TTCTCTTGTA TTCATCATGT TTCCCCTTGT TGGTTCATCC
CAAGAGCACC AGAAAATTAC AAGCAGCCCT TCAAGAACCA AAGATAATAA CCACATTCAG ATGAGTCCAA GACTTCAGTT
TGAGATTACA CTACATGGCT TTCTCCTGTG GGCTTCAATG GGGTTCTTGA TGCCTGTAGG TATACTTGCA ATTAGATTAT
CAAACAAAGA GGAGAATTCA AGAAGGCATA GAATTGTGTT CTATGTTCAT TCAATTTTAC AGATGATTGC GGTGCTGCTT
GCCACAGTTG GAGCAATCAT GTCCATAAAA AATTTCAACA ACCACTTCAA CAATAGTCAT CAAAGATTAG GAGTTGCACT
ATATGGCATT ATCTGGCTCC AAGTTTTACT TGGTCTTTTT CGACCACAAA GAGGATCCAA AAGAAGTGTT TGGTTCTTTG
CACACTGGAT ACTTGGAACT GCAGTCACAT TCCTGGGTGT CCTGAATGTA TATCTTGGAT TAGAAGCCTA CCACCAAAAA
ACATCAAAAG GCATAAAAAT TTGGAAAATA CTTTTCACTG TTGAGATAAC TTTGGTTGTG TTTTTCTACC TTTTTCAAGA
AAAATGGGTC TATATACAAA ATCAAGGAGT GGTTTTGGGC AATGAAATGA TGACTTCTAT TTGTCAAGAA ATTGGACCTA
ATGAAAAGGA TGAGAAGGTA TTGAACACCT GATGAGGAAG AAGAATCAAT GCATCACCAT AATTGACCCT GACTTCTACG
TAGAATACAA GTGTTTAAAG CATATAGAGT ACTGGTGAAT TTGAATTCAA AGATTGTAAA TTACTTGGCT TATATGATTT
CTATGTCTGG CTAAGATGCA ATTTCAAGAA CACAGAATAT CATTTCATGG AGAACAAATA TATTCATAAT TGATTTTTAC
CTCTGGTCCA TAAGGGGCAA TTGCTTCCTG CACCCTGTAA TTGTTAGAAT ATCCATATTA TCCATATGAT GTACTTGTGT
TGGTTGTTGA TGGTTGGTGG GGTTTTTTTG TTGGTGATGG TGTTCGTGAT TGGTAGTGGT CGCCGGAGGT AGTGAGCTAT
TTTCATGTTT TTTAATAAAT TTATGAGCAA TCCAAAATAT ATTTATAGAC TTCAAAATAT CTTTTTGGAC TGTATAATTC
CAAATTTATT AAGAAATA

>Vigan.05G248500.01
ATGGGAGTTC AGCAAAAGCT CATTTCTTTC TTCTTTCATG CTTCTCTTGT ATTCATCATG TTTCCCCTTG TTGGTTCATC
CCAAGAGCAC CAGAAAATTA CAAGCAGCCC TTCAAGAACC AAAGATAATA ACCACATTCA GATGAGTCCA AGACTTCAGT
TTGAGATTAC ACTACATGGC TTTCTCCTGT GGGCTTCAAT GGGGTTCTTG ATGCCTGTAG GTATACTTGC AATTAGATTA
TCAAACAAAG AGGAGAATTC AAGAAGGCAT AGAATTGTGT TCTATGTTCA TTCAATTTTA CAGATGATTG CGGTGCTGCT
TGCCACAGTT GGAGCAATCA TGTCCATAAA AAATTTCAAC AACCACTTCA ACAATAGTCA TCAAAGATTA GGAGTTGCAC
TATATGGCAT TATCTGGCTC CAAGTTTTAC TTGGTCTTTT TCGACCACAA AGAGGATCCA AAAGAAGTGT TTGGTTCTTT
GCACACTGGA TACTTGGAAC TGCAGTCACA TTCCTGGGTG TCCTGAATGT ATATCTTGGA TTAGAAGCCT ACCACCAAAA
AACATCAAAA GGCATAAAAA TTTGGAAAAT ACTTTTCACT GTTGAGATAA CTTTGGTTGT GTTTTTCTAC CTTTTTCAAG
AAAAATGGGT CTATATACAA AATCAAGGAG TGGTTTTGGG CAATGAAATG ATGACTTCTA TTTGTCAAGA AATTGGACCT
AATGAAAAGG ATGAGAAGGT ATTGAACACC TGA

>Vigan.05G248500.01
MGVQQKLISF FFHASLVFIM FPLVGSSQEH QKITSSPSRT KDNNHIQMSP RLQFEITLHG FLLWASMGFL MPVGILAIRL
SNKEENSRRH RIVFYVHSIL QMIAVLLATV GAIMSIKNFN NHFNNSHQRL GVALYGIIWL QVLLGLFRPQ RGSKRSVWFF
AHWILGTAVT FLGVLNVYLG LEAYHQKTSK GIKIWKILFT VEITLVVFFY LFQEKWVYIQ NQGVVLGNEM MTSICQEIGP
NEKDEKVLNT *