GBrowse Details

Vigan.05G239200.01

Basic Information:
Name: Vigan.05G239200.01
Multiple alignment
Variant Information
Position: Chr05:28837626..28840908 (- strand)
Length: 3283
Functional Information:
Description: Similar to Membrin. [V7BNW0, Phaseolus vulgaris]
GO: Biological Process: transport (GO:0006810)
Cellular Component: Golgi stack (GO:0005795)
InterPro: GOSR2/Membrin/Bos1 (IPR027027)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.06,21.51,9.10,13.60,15.22,8.08,9.94,9.96
Arabidopsis thaliana homolog: AT2G36900.1
Automatic updates:
Name: NM_001255192 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max membrin-11-like (LOC100803902), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:28837626..28837998 (- strand)
Length: 373
Type: three_prime_UTR
Position: Chr05:28837999..28838160 (- strand)
Length: 162
Type: CDS
Position: Chr05:28838863..28839012 (- strand)
Length: 150
Type: CDS
Position: Chr05:28839095..28839215 (- strand)
Length: 121
Type: CDS
Position: Chr05:28840563..28840807 (- strand)
Length: 245
Type: CDS
Position: Chr05:28840808..28840908 (- strand)
Length: 101
Type: five_prime_UTR

>Vigan.05G239200.01 class=Sequence position=Chr05:28837626..28840908 (- strand)
ATCCAAACCA ACGGTTTATT TTGCTTTGTT TTCCGGTGAA ATTGAAGAGC GCTCTCTCGG AGAAACTTCA GAAAACCACC
ATTACCATCT CCGTCGCCGC CATGGAAGGA GGTGGAGGAA CGTTATCGGA GATTCACCAA TCCGCAAAGA AACTTCTGCT
TAGGTCTCGT GACGGTCTTG AACGTCTCGA ACGCCTCGAG TACTCTGCCA CCGCCGGCAC CGGCGCCGAA ACGGAGCTTT
CGTTCGCTGT GAAGAAGGAC ATCACACAGA TCCAATCCCT CTGCGTGGAG ATGGAGCGCC TCTGGCGATC CGTCACAGCA
AAACCTCAAC GCGATCTCTG GAAAAGGTGA ACGATTTCGA TCCCGATCTC AGTTGAATCA ATTGTTTTCA TGAGGATATT
TGTGTGTTTT TGAGGAAATT GCTTCGATGA TTTGGGCATG TTGTTTCGCG CGGTGGTTGT TGGAGTTCGG AATTGCATAT
TTGATTGTGG AAGAATGCAG ACAATTTCGT ATCTCTTTCT GATGATATTG CTACTGTGAT TTTTCTCCAT ATTATATGAG
TTCAGAGTTG CGCCTCTTGA AAATTTGAAG AATGATGCCA ATATTTTGTT TGGAATTAAT CGGAAGAGTA ATTAAAATTC
AATGCGAAAT GTTGTTATTT GGGATGGTAT GGAAAAGTGC TAGGGATTAG ATGGTTGGTG ATTCGAAATG TAGGAGTGAT
GTTGTAATGG TCCTGTCTCT TTGATTTCTG TTTGTTATTG CAATTTGTTA TGTATGTTAA TGTAAATTCC CAAAATTGTT
CTCAAAGCTA GACGTTGCAA ACGTTGTTAT TGATAAAAAG ATCGAAGTAC TAAATGCTTA GGTCACTCGA GAGAGGCCTA
CGGAACATTA CGAAATAAAA AGCTCCTAGG CCGTGGGTGA TCCGTCAATG CATGTTTTTC TTAATTCTGC ATTGGCTGTC
TCAAAATCAA GTAAAAAGCT TCATTTATTT GTGGTTTACA AGGATGAGTA CAGTTTTGGG AAGAGAAACA ATTAATCTGT
AAATTTACTC AGACATATGC TACCAATTAG GATTTGTCAA TCTGCTGGTG TTAGAAATAA CAAGAACTTA AGTATCTGCA
ATGTTTCTTA GCGTTTACCT CAATTTCTTC ATTCTGTTCC AACAGTGCTC AATGAGCAAT AACATCTATA TAAATTTGCC
TTTATTTTTG CTGCATTTCT TAACACCGCA TTCGTTTTGT CAAAGTAAAT GTGACAGACA TACTGTATAA TATTTGTTTA
TTTTCCCTCT CCCTCTGCTT GAAAATTAAA CTATCTCCTG CTTTAATCCA CTTCTATGTT TACATACCCT ATATCATTGT
TGAAATCTCA ATCTTTTGGA ATATAACTTA TTTCACAATA ATTATCCTTG ACCTTAGTAA TGCTCTTCTG TTCTGGTTAA
GATCTATAGT AGCTTCAGAA TTTTGGAGTC ACAAAATTTT AATGGCAGGT TCTCTTTATT GTCTCACTTA TCTGGGCTAG
TCATTTTGTG CAACATGATT ACACGCGTAA CTAAATGCTA ATTGTCATAT CATAATACAA AAAACAAATT CTCTGTATCT
TCTGCTTACA TCTATGCTAT AATGGGTTCT GCTGCTGGAA TTGCAGTATT CTAGTTGAGG ATTTTCATTA AAGGTATTAT
GTTTCTTATT CAGAAAAGTG GAACAAATAG CTGAGGAGGC TGAATCACTA AGAGCAAGTT TGGATAAATA TAACTTACGG
CATCAGAAAC GGATGAGAGA AGCTAATGAG AGAGCAGAAC TGTTGGGACG AGCTGTATGT TGTTACCATC ATGCTCTAGT
TTAGTGGCTT ATTTTAATCG TCATTTGCTG ATAACAACTT CATTTGAAAT TGCTAGAATG GGGATTCTGC TCATGTTCTG
AGAATTTTTG ATGAGGAGGC ACAAGCATTA CATTCAGTCC GCGCTTCTGC CCGGGAACTA GAAAATGCAA ATGCAATTGG
GGAAGCCATC CTTTCTTCAA TACATGGTCA AAGAGAACGC TTGAAGGTAA TTTCATTTCA TTTCTGTTGT GACAACATTT
ATATTCTACA GTTTAGGTTT AGCTAGAATA ATATCGTTTT GATTATTGGT GACAAATTAA ATATTATGTT TGTTTATAAG
CTACAATTGT AGTTTTTCTA TGGAAGAAAT TTAGATTGTA ATTGCGTAAA ATATCAATTT CCTATCTCTA TTTATTGTTC
TTTTCGTGCT GTTTCAGTTT CAGATGTTCA CCTCTTAAAA TATCCACTAA GTCATTAGTT ACGTTAAATA TAATTATGCT
TTTTATCTCT ATTTCTCATT AATGCTATTT TATGGTTCAG GTTTTAAACA TAAGACTTTT TTGTCCCCGT TTCCCTTTAA
ATTTGAACCA TTACTTCTAC TTCCATTTAC ACTTGAGAAC ATCTCTCTTG AAGAATCCAT TTCGCGGAAT ACCAAGAAAG
TGTGTTCTTG TAATTCTTTC TTCTTTTTTG GGCTTCACTC ATTGAAAATT GGAATCAAAC TTAGTTTGTT TGATGGTTTT
CATTATCGTA TTCTCTTGTT GAAAAAGTGT AGCTTTTATC CTTTTCATGT TGTTTTCTAT ATTATTAACC TTCATCAACA
TCCAGTTTTT TAGGGTTTTA ATTTCTTAGT GATAATTAAT GGAGCATTAT TAATCCATTA TATTGTTGTT GATATACCTT
TCCATTTGGA CATATATCCG GGATGCAGAG TGCACATAGA AAAGCATTGG ACATCCTCAA TACAGTTGGG ATATCTAACT
CCGTTTTGAG GCTAATTGAG AGAAGAAACC GTGTCGACCA ATGGATCAAA TATGCAGGAA TGCTATTGAC TGTCATTTTC
TTGTTCGCAT TTGTTTACTG GAGACATTGA CCATTCTCAG ATGTTGAAAA TCTGGAAATT TGTTTGGGAG AGCATATAAA
AGTGAGATAC GAAGTATATT TGGCAGAAAT AAGCGAAACT TCAACAGCTT GTGTGTCACG AGGTAATAGA CACGAGGCTT
AAATCTTGTA ACTTCTTACA CCATAGTCTT TGACAATATA TTTTAGCCTA CTTTAGATGT ACAGTTTCAT CTTAGAACAG
TTCCATCTTA GATTTCTATT CCCAAACTTG ATGAATTTAC TGTCACTTCC TATGCCGAAT CCCTCTAAAA AATATTCTAC
TTATATGGTT ACTTCAAAGT AAAATGTCCA TCGGTACTTT TCAGATAAGT GAACATGGAA CTTTTTTCTT TCTTTATTTG
TAA

>Vigan.05G239200.01
ATCCAAACCA ACGGTTTATT TTGCTTTGTT TTCCGGTGAA ATTGAAGAGC GCTCTCTCGG AGAAACTTCA GAAAACCACC
ATTACCATCT CCGTCGCCGC CATGGAAGGA GGTGGAGGAA CGTTATCGGA GATTCACCAA TCCGCAAAGA AACTTCTGCT
TAGGTCTCGT GACGGTCTTG AACGTCTCGA ACGCCTCGAG TACTCTGCCA CCGCCGGCAC CGGCGCCGAA ACGGAGCTTT
CGTTCGCTGT GAAGAAGGAC ATCACACAGA TCCAATCCCT CTGCGTGGAG ATGGAGCGCC TCTGGCGATC CGTCACAGCA
AAACCTCAAC GCGATCTCTG GAAAAGAAAA GTGGAACAAA TAGCTGAGGA GGCTGAATCA CTAAGAGCAA GTTTGGATAA
ATATAACTTA CGGCATCAGA AACGGATGAG AGAAGCTAAT GAGAGAGCAG AACTGTTGGG ACGAGCTAAT GGGGATTCTG
CTCATGTTCT GAGAATTTTT GATGAGGAGG CACAAGCATT ACATTCAGTC CGCGCTTCTG CCCGGGAACT AGAAAATGCA
AATGCAATTG GGGAAGCCAT CCTTTCTTCA ATACATGGTC AAAGAGAACG CTTGAAGAGT GCACATAGAA AAGCATTGGA
CATCCTCAAT ACAGTTGGGA TATCTAACTC CGTTTTGAGG CTAATTGAGA GAAGAAACCG TGTCGACCAA TGGATCAAAT
ATGCAGGAAT GCTATTGACT GTCATTTTCT TGTTCGCATT TGTTTACTGG AGACATTGAC CATTCTCAGA TGTTGAAAAT
CTGGAAATTT GTTTGGGAGA GCATATAAAA GTGAGATACG AAGTATATTT GGCAGAAATA AGCGAAACTT CAACAGCTTG
TGTGTCACGA GGTAATAGAC ACGAGGCTTA AATCTTGTAA CTTCTTACAC CATAGTCTTT GACAATATAT TTTAGCCTAC
TTTAGATGTA CAGTTTCATC TTAGAACAGT TCCATCTTAG ATTTCTATTC CCAAACTTGA TGAATTTACT GTCACTTCCT
ATGCCGAATC CCTCTAAAAA ATATTCTACT TATATGGTTA CTTCAAAGTA AAATGTCCAT CGGTACTTTT CAGATAAGTG
AACATGGAAC TTTTTTCTTT CTTTATTTGT AA

>Vigan.05G239200.01
ATGGAAGGAG GTGGAGGAAC GTTATCGGAG ATTCACCAAT CCGCAAAGAA ACTTCTGCTT AGGTCTCGTG ACGGTCTTGA
ACGTCTCGAA CGCCTCGAGT ACTCTGCCAC CGCCGGCACC GGCGCCGAAA CGGAGCTTTC GTTCGCTGTG AAGAAGGACA
TCACACAGAT CCAATCCCTC TGCGTGGAGA TGGAGCGCCT CTGGCGATCC GTCACAGCAA AACCTCAACG CGATCTCTGG
AAAAGAAAAG TGGAACAAAT AGCTGAGGAG GCTGAATCAC TAAGAGCAAG TTTGGATAAA TATAACTTAC GGCATCAGAA
ACGGATGAGA GAAGCTAATG AGAGAGCAGA ACTGTTGGGA CGAGCTAATG GGGATTCTGC TCATGTTCTG AGAATTTTTG
ATGAGGAGGC ACAAGCATTA CATTCAGTCC GCGCTTCTGC CCGGGAACTA GAAAATGCAA ATGCAATTGG GGAAGCCATC
CTTTCTTCAA TACATGGTCA AAGAGAACGC TTGAAGAGTG CACATAGAAA AGCATTGGAC ATCCTCAATA CAGTTGGGAT
ATCTAACTCC GTTTTGAGGC TAATTGAGAG AAGAAACCGT GTCGACCAAT GGATCAAATA TGCAGGAATG CTATTGACTG
TCATTTTCTT GTTCGCATTT GTTTACTGGA GACATTGA

>Vigan.05G239200.01
MEGGGGTLSE IHQSAKKLLL RSRDGLERLE RLEYSATAGT GAETELSFAV KKDITQIQSL CVEMERLWRS VTAKPQRDLW
KRKVEQIAEE AESLRASLDK YNLRHQKRMR EANERAELLG RANGDSAHVL RIFDEEAQAL HSVRASAREL ENANAIGEAI
LSSIHGQRER LKSAHRKALD ILNTVGISNS VLRLIERRNR VDQWIKYAGM LLTVIFLFAF VYWRH*