GBrowse Details

Vigan.05G238600.01

Basic Information:
Name: Vigan.05G238600.01
Multiple alignment
Variant Information
Position: Chr05:28670829..28673877 (+ strand)
Length: 3049
Functional Information:
Description: Similar to Uncharacterized protein. [I1KXW9, Glycine max]
GO: Biological Process: photosynthesis (GO:0015979)
Cellular Component: photosystem II (GO:0009523)
Cellular Component: photosystem II oxygen evolving complex (GO:0009654)
Cellular Component: extrinsic to membrane (GO:0019898)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Photosystem II PsbP, oxygen evolving complex (IPR002683)
Mog1/PsbP, alpha/beta/alpha sandwich (IPR016123)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.23,0.50,214.78,1915.53,0.86,289.75,5.90,260.43
Arabidopsis thaliana homolog: AT1G06680.1
Automatic updates:
Name: NM_001289207 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max oxygen-evolving enhancer protein 2, chloroplastic-like (LOC100781848), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr05:28670829..28670994 (+ strand)
Length: 166
Type: five_prime_UTR
Position: Chr05:28670995..28671238 (+ strand)
Length: 244
Type: CDS
Position: Chr05:28672327..28672559 (+ strand)
Length: 233
Type: CDS
Position: Chr05:28672747..28672797 (+ strand)
Length: 51
Type: CDS
Position: Chr05:28673298..28673558 (+ strand)
Length: 261
Type: CDS
Position: Chr05:28673559..28673877 (+ strand)
Length: 319
Type: three_prime_UTR

>Vigan.05G238600.01 class=Sequence position=Chr05:28670829..28673877 (+ strand)
CACCAATCAT GACCTCCAAA TGCAATTATC CACAACCAAC CACATTTTGA TTGCCACATC ATCCACCACA CATCAAAACC
ACTTCAAAGT CCACACACAC ACACTTTGCC TACTACACTG TAATCACAGG CCAAAGAACC TGTGAAGATT TTGAGTTTTG
AGCACAATGG CCTCCACCCA ATGTTTCCTG CACCACCATG CCCTCACCAA CCCTGCTAGA GCTTCACCAC AGCGCCAGGT
GCTGACCACC AAACCTAACC ACATTGTCTG CAAGTCACAG AAGCAGGTTG TCCAAGAGGG TGATGCCAAC ACCACCCTTG
TCTCTCGCAG GTTGGCCCTC ACTGTGCTCA TTGGTGCTGC TGCTGTCGGC TCCAAGGTCT CTCCTGCTGA TGCAGCCTAT
GGGGAAGCTG GTATTTCACC CTTTTTCACT TCTTTCATTG CTAAACTATT ACCATCTTTC AAGTAGATTC TTGATACAGG
AGAGAAAGGA AGAGGAAATG AGTTTCCTAG AGTTAAAATT ATCTTCTTTT TAGGTTAACA GTCAAGATAT ATAAGAAATT
TTTACAAATT TAGATATGTA AAGCACACCT CATATCTTTG GAGTGATTAC CATGCATGAT AAACCTTATA AACCTCAATC
ATGCAGAAAA TTGTTGTCAA ATGTGGCTGA TATGGCTGTT GTGGAATCCA ATTTTGATAC TTTGAGTTTA GCTTTGTGAT
CAACTTTACA TATTTGTTGC AGAGAGAGTA TCTTTAAGGA ACCTGAATGG TGTTGTGTGG TTCATATAGT CGAACTTTCA
CTTTACTTGG TAATGCTTTA TTATTGTTTG TTTGTTTGTC AATGGAGAAT AGGAATAGAA ATAGATCAGA CAATAGGTTA
TACTTAAACT TTTATAGAAA TTTATTTAGT TAAAAAGGTC AATTTTTTTT TGCCAATCAA AACCTTTAGG CCTAACAGGT
TTGTATAGTT TCCGACTGTT TTTTTTAACA AAAGTTTTGT CCGAAGTAGA ACTCATTCCA CTTTTAGTGA AGAAACCGGG
TTTTGAGTTC TTAAGGTAAT CATACTTCCT TTGGTGTCAT GATAGTTAGA GCCAAATAAC TCTAATACTT CGCTTTTAAT
TCAACAGTTA TTTTATTGTA ATTAAAGTGT GCAGTTTACT TCTGGATTCT GTACATTGCC AATTATAGTT TGTTAGAGTT
CAAAGATGAA GAAATAAAGT AATGAGAACC AAAATAGGAA AAATGCATTG TTCTAAGAGT GGTTTTCACA TTGCCCTCTG
GCTTTGAACC ATAAGCCCAC TTAAACATAT TGCAGAAATT ATAATTGAAA GAAAGAGGTT AGTGAGGGTT AGAATATTTT
TCTTATAACT TGATCACACA GAACTTCTGA TACTATGTCA GGGAACCAAC TATCTCAAAA CACCACAGAA TAGTTTTTAT
CAAAAATATT TTGGGTATTC TGAAAATTAG ACATCAATCA CTATTGATTT TATTGCAGCC AATGTGTTTG GAAAGCCAAA
GACAAACACA GACTTCCTTC CATACAGTGG AAATGGATTC AAACTCTCAA TTCCCTCAAA GTGGAACCCA AGCAAAGAGG
TTGAGTACCC AGGTCAGGTT CTGAGATATG AGGACAATTT TGACACAACA AGCAATGTTG CTGTCATGGT CACTGCAACT
GATAAGACGT CTATCACTGA CTATGGTTCA CCTGAGGAGT TTCTATCTAA GGTAAACTTA TAGCCTTTGG CTTGTTTTCT
ACTGAACAAT TATGTTTCAT ACTCCATATC ATAGCCAGTG TGTGTACAAT AGTCTTGAGT GAAGCTTCCA AAATCTAAGT
GAATAGTGTC TACAAAGTTT AAAGATGGTG ACAACAGTTG CTGGCTGAAA TTCAAGACGT GAGTTTTCCC TTTTGCAGGT
GGATTATTTG CTAGGGAAAC AAGCCTTCTT TGGCCAAACT GACTCTGAGG TAATTGATTC ATATTTTATG AATAGCCTTA
TGACATGCAT TGTTAACCTT ATTATTGTGT TATCCTTTCC TTTTCATTTT TGGTAAATGC AAACAAATTT AGATACTAGT
CAAGGAAATA AAAATGAGAA TGTTCATAGG AAAATAATGT ATGAAAACAA AAGAACTATT ATATATTTGA CATGTACTTT
TAGTCACAGC AAGCCCTGTT CAAATTGTGG TACAAAACAT AAAATGAATA ATTACAGTCT GGAATTTAAT TAGAATATAC
TGTCATCCAA TCATAGATTG TCATTTACAG AAAACAATGC AAAGTTTACA CTGATGTGAT TTTCAAATGG TTAACAGTGT
AAAAATCTTA ACACTTGTAG TGTAGGAAAT TAAACTCAAT CAAAAATTTC TATTCTTATA ACAAAATCTA TAATCTTTTG
AGTTTAATCA TCAAGAATGC ACCAAACGTT GTTGCATATG CTTACTGCTT CTGAACTTTA ATTTCTCAGG GTGGTTTTGA
TTCCAATGCT GTAGCAACTG CAAACATCTT GGAGAGTGCA ACACCTGTCA TTGATGGGAA AAAGTACTAC AGTTTGACTG
TGTTAACAAG AACAGCTGAT GGAGATGAAG GTGGGAAGCA CCAGCTGATT ACAGCAACTG TGAAAGATGG CAAACTATAC
ATCTGCAAGG CTCAAGCTGG AGACAAGAGG TGGTTTAAGG GAGCAAGAAA ATTTGTGGAG AGTACAGCAA GTTCCTTCAG
TGTTGCCTAA GAACATGGTG AATGTTCACT CTGCATGTAA ATCATCTTGA AGGGTGTGTA TGTCTTGAAT TATGTGCTTT
TTGTCCACAA GTTCCATTAT TTGAGGCAGT TGGTTGGAGT AAGAACTTTG ATTCTTAATT TTTCATGTCT TCTAAGGACT
TGCCCTCATC TCTTGTACCC TTTTGGATTA AGCATTTTAA GTTGCTATAA GCCATATTAA GAACCATTAT GTTTATAAAA
GGCTCAAGGG CCCTTTTAAA AGGAAGGTGC TTGAAATATT TTGTAATCAT TTTGTTTTTA ATTTCAAAAC ATAACTTTAT
TAATGGGAA

>Vigan.05G238600.01
CACCAATCAT GACCTCCAAA TGCAATTATC CACAACCAAC CACATTTTGA TTGCCACATC ATCCACCACA CATCAAAACC
ACTTCAAAGT CCACACACAC ACACTTTGCC TACTACACTG TAATCACAGG CCAAAGAACC TGTGAAGATT TTGAGTTTTG
AGCACAATGG CCTCCACCCA ATGTTTCCTG CACCACCATG CCCTCACCAA CCCTGCTAGA GCTTCACCAC AGCGCCAGGT
GCTGACCACC AAACCTAACC ACATTGTCTG CAAGTCACAG AAGCAGGTTG TCCAAGAGGG TGATGCCAAC ACCACCCTTG
TCTCTCGCAG GTTGGCCCTC ACTGTGCTCA TTGGTGCTGC TGCTGTCGGC TCCAAGGTCT CTCCTGCTGA TGCAGCCTAT
GGGGAAGCTG CCAATGTGTT TGGAAAGCCA AAGACAAACA CAGACTTCCT TCCATACAGT GGAAATGGAT TCAAACTCTC
AATTCCCTCA AAGTGGAACC CAAGCAAAGA GGTTGAGTAC CCAGGTCAGG TTCTGAGATA TGAGGACAAT TTTGACACAA
CAAGCAATGT TGCTGTCATG GTCACTGCAA CTGATAAGAC GTCTATCACT GACTATGGTT CACCTGAGGA GTTTCTATCT
AAGGTGGATT ATTTGCTAGG GAAACAAGCC TTCTTTGGCC AAACTGACTC TGAGGGTGGT TTTGATTCCA ATGCTGTAGC
AACTGCAAAC ATCTTGGAGA GTGCAACACC TGTCATTGAT GGGAAAAAGT ACTACAGTTT GACTGTGTTA ACAAGAACAG
CTGATGGAGA TGAAGGTGGG AAGCACCAGC TGATTACAGC AACTGTGAAA GATGGCAAAC TATACATCTG CAAGGCTCAA
GCTGGAGACA AGAGGTGGTT TAAGGGAGCA AGAAAATTTG TGGAGAGTAC AGCAAGTTCC TTCAGTGTTG CCTAAGAACA
TGGTGAATGT TCACTCTGCA TGTAAATCAT CTTGAAGGGT GTGTATGTCT TGAATTATGT GCTTTTTGTC CACAAGTTCC
ATTATTTGAG GCAGTTGGTT GGAGTAAGAA CTTTGATTCT TAATTTTTCA TGTCTTCTAA GGACTTGCCC TCATCTCTTG
TACCCTTTTG GATTAAGCAT TTTAAGTTGC TATAAGCCAT ATTAAGAACC ATTATGTTTA TAAAAGGCTC AAGGGCCCTT
TTAAAAGGAA GGTGCTTGAA ATATTTTGTA ATCATTTTGT TTTTAATTTC AAAACATAAC TTTATTAATG GGAA

>Vigan.05G238600.01
ATGGCCTCCA CCCAATGTTT CCTGCACCAC CATGCCCTCA CCAACCCTGC TAGAGCTTCA CCACAGCGCC AGGTGCTGAC
CACCAAACCT AACCACATTG TCTGCAAGTC ACAGAAGCAG GTTGTCCAAG AGGGTGATGC CAACACCACC CTTGTCTCTC
GCAGGTTGGC CCTCACTGTG CTCATTGGTG CTGCTGCTGT CGGCTCCAAG GTCTCTCCTG CTGATGCAGC CTATGGGGAA
GCTGCCAATG TGTTTGGAAA GCCAAAGACA AACACAGACT TCCTTCCATA CAGTGGAAAT GGATTCAAAC TCTCAATTCC
CTCAAAGTGG AACCCAAGCA AAGAGGTTGA GTACCCAGGT CAGGTTCTGA GATATGAGGA CAATTTTGAC ACAACAAGCA
ATGTTGCTGT CATGGTCACT GCAACTGATA AGACGTCTAT CACTGACTAT GGTTCACCTG AGGAGTTTCT ATCTAAGGTG
GATTATTTGC TAGGGAAACA AGCCTTCTTT GGCCAAACTG ACTCTGAGGG TGGTTTTGAT TCCAATGCTG TAGCAACTGC
AAACATCTTG GAGAGTGCAA CACCTGTCAT TGATGGGAAA AAGTACTACA GTTTGACTGT GTTAACAAGA ACAGCTGATG
GAGATGAAGG TGGGAAGCAC CAGCTGATTA CAGCAACTGT GAAAGATGGC AAACTATACA TCTGCAAGGC TCAAGCTGGA
GACAAGAGGT GGTTTAAGGG AGCAAGAAAA TTTGTGGAGA GTACAGCAAG TTCCTTCAGT GTTGCCTAA

>Vigan.05G238600.01
MASTQCFLHH HALTNPARAS PQRQVLTTKP NHIVCKSQKQ VVQEGDANTT LVSRRLALTV LIGAAAVGSK VSPADAAYGE
AANVFGKPKT NTDFLPYSGN GFKLSIPSKW NPSKEVEYPG QVLRYEDNFD TTSNVAVMVT ATDKTSITDY GSPEEFLSKV
DYLLGKQAFF GQTDSEGGFD SNAVATANIL ESATPVIDGK KYYSLTVLTR TADGDEGGKH QLITATVKDG KLYICKAQAG
DKRWFKGARK FVESTASSFS VA*